RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 TATP17735 454 aaPredicted RBP24.26■■□□□ 1.47
SHKBP1-204ENST00000594862 SHANK3Q9BYB0 1731 aa24.26■■□□□ 1.47
SHKBP1-204ENST00000594862 R3HDM1Q15032 1099 aaKnown RBP24.25■■□□□ 1.47
SHKBP1-204ENST00000594862 MORC1Q86VD1 984 aa24.24■■□□□ 1.47
SHKBP1-204ENST00000594862 DDX54Q8TDD1 881 aaKnown RBP24.24■■□□□ 1.47
SHKBP1-204ENST00000594862 PLEKHG2Q9H7P9 1386 aa24.24■■□□□ 1.47
SHKBP1-204ENST00000594862 PCDH11XQ9BZA7 1347 aa24.22■■□□□ 1.47
SHKBP1-204ENST00000594862 PCDH11YQ9BZA8 1340 aa24.22■■□□□ 1.47
SHKBP1-204ENST00000594862 TNNT2P45379 298 aaPredicted RBP24.22■■□□□ 1.47
SHKBP1-204ENST00000594862 USHBP1Q8N6Y0 703 aa24.22■■□□□ 1.47
SHKBP1-204ENST00000594862 BTAF1O14981 1849 aa24.21■■□□□ 1.47
SHKBP1-204ENST00000594862 PKD1L3Q7Z443 1732 aa24.21■■□□□ 1.47
SHKBP1-204ENST00000594862 DOT1LQ8TEK3 1739 aa24.21■■□□□ 1.47
SHKBP1-204ENST00000594862 ACSBG1Q96GR2 724 aa24.2■■□□□ 1.46
SHKBP1-204ENST00000594862 KCNQ2O43526 872 aa24.19■■□□□ 1.46
SHKBP1-204ENST00000594862 PTF1AQ7RTS3 328 aa24.19■■□□□ 1.46
SHKBP1-204ENST00000594862 AMER1Q5JTC6 1135 aaPredicted RBP24.18■■□□□ 1.46
SHKBP1-204ENST00000594862 NPC1L1Q9UHC9 1359 aa24.16■■□□□ 1.46
SHKBP1-204ENST00000594862 TXNRD1Q16881 649 aa24.16■■□□□ 1.46
SHKBP1-204ENST00000594862 EIF4A2Q14240 407 aaKnown RBP24.15■■□□□ 1.46
SHKBP1-204ENST00000594862 EYA1Q99502 592 aa24.15■■□□□ 1.46
SHKBP1-204ENST00000594862 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.15■■□□□ 1.46
SHKBP1-204ENST00000594862 SPG7Q9UQ90 795 aa24.15■■□□□ 1.46
SHKBP1-204ENST00000594862 KAT6BQ8WYB5 2073 aa24.14■■□□□ 1.46
SHKBP1-204ENST00000594862 PER1O15534 1290 aaPredicted RBP24.13■■□□□ 1.45
SHKBP1-204ENST00000594862 IGSF1Q8N6C5 1336 aa24.12■■□□□ 1.45
SHKBP1-204ENST00000594862 SYTL4Q96C24 671 aaPredicted RBP24.12■■□□□ 1.45
SHKBP1-204ENST00000594862 PROM2Q8N271 834 aa24.11■■□□□ 1.45
SHKBP1-204ENST00000594862 PRIM1P49642 420 aaKnown RBP24.1■■□□□ 1.45
SHKBP1-204ENST00000594862 SLC27A3Q5K4L6 730 aa24.1■■□□□ 1.45
SHKBP1-204ENST00000594862 STK32BQ9NY57 414 aa24.1■■□□□ 1.45
SHKBP1-204ENST00000594862 HMGB2P26583 209 aaKnown RBP24.09■■□□□ 1.45
SHKBP1-204ENST00000594862 PAPPAQ13219 1627 aa24.09■■□□□ 1.45
SHKBP1-204ENST00000594862 LY75O60449 1722 aa24.07■■□□□ 1.44
SHKBP1-204ENST00000594862 CYP27B1O15528 508 aa24.06■■□□□ 1.44
SHKBP1-204ENST00000594862 ANO8Q9HCE9 1232 aaPredicted RBP24.06■■□□□ 1.44
SHKBP1-204ENST00000594862 NKX1-1Q15270 411 aaPredicted RBP24.05■■□□□ 1.44
SHKBP1-204ENST00000594862 CC2D1BQ5T0F9 858 aaKnown RBP24.05■■□□□ 1.44
SHKBP1-204ENST00000594862 CASZ1Q86V15 1759 aa24.05■■□□□ 1.44
SHKBP1-204ENST00000594862 SLC15A2Q16348 729 aa24.04■■□□□ 1.44
SHKBP1-204ENST00000594862 IFNL2Q8IZJ0 200 aa24.04■■□□□ 1.44
SHKBP1-204ENST00000594862 TOGARAM1Q9Y4F4 1720 aa24.04■■□□□ 1.44
SHKBP1-204ENST00000594862 MTHFSP49914 203 aa24.02■■□□□ 1.44
SHKBP1-204ENST00000594862 AMOTQ4VCS5 1084 aa24.02■■□□□ 1.44
SHKBP1-204ENST00000594862 KDRP35968 1356 aa24.02■■□□□ 1.44
SHKBP1-204ENST00000594862 ITGB4P16144 1822 aa24.01■■□□□ 1.43
SHKBP1-204ENST00000594862 PLEKHO1Q53GL0 409 aaPredicted RBP24.01■■□□□ 1.43
SHKBP1-204ENST00000594862 SPON1Q9HCB6 807 aa24.01■■□□□ 1.43
SHKBP1-204ENST00000594862 HSP90AB1P08238 724 aaKnown RBP24■■□□□ 1.43
SHKBP1-204ENST00000594862 PHKG2P15735 406 aa24■■□□□ 1.43
SHKBP1-204ENST00000594862 IL13P35225 146 aa24■■□□□ 1.43
SHKBP1-204ENST00000594862 QSER1Q2KHR3 1735 aa24■■□□□ 1.43
SHKBP1-204ENST00000594862 SMARCC1Q92922 1105 aaPredicted RBP23.99■■□□□ 1.43
SHKBP1-204ENST00000594862 MPRIPQ6WCQ1 1025 aa23.97■■□□□ 1.43
SHKBP1-204ENST00000594862 LRRC4BQ9NT99 713 aa23.97■■□□□ 1.43
SHKBP1-204ENST00000594862 CCNL1Q9UK58 526 aaPredicted RBP23.97■■□□□ 1.43
SHKBP1-204ENST00000594862 PALLDQ8WX93 1383 aa23.96■■□□□ 1.43
SHKBP1-204ENST00000594862 SULT6B1Q6IMI4 303 aa23.96■■□□□ 1.43
SHKBP1-204ENST00000594862 DIAPH1O60610 1272 aaKnown RBP23.95■■□□□ 1.42
SHKBP1-204ENST00000594862 TMOD3Q9NYL9 352 aa23.95■■□□□ 1.42
SHKBP1-204ENST00000594862 DCAF5Q96JK2 942 aa23.94■■□□□ 1.42
SHKBP1-204ENST00000594862 C5P01031 1676 aa23.93■■□□□ 1.42
SHKBP1-204ENST00000594862 C1orf141Q5JVX7 400 aa23.93■■□□□ 1.42
SHKBP1-204ENST00000594862 ZNF530Q6P9A1 599 aaPredicted RBP23.93■■□□□ 1.42
SHKBP1-204ENST00000594862 AEBP1Q8IUX7 1158 aa23.93■■□□□ 1.42
SHKBP1-204ENST00000594862 AKT1S1Q96B36 256 aa23.93■■□□□ 1.42
SHKBP1-204ENST00000594862 CFAP53Q96M91 514 aa23.92■■□□□ 1.42
SHKBP1-204ENST00000594862 PPP1R1BQ9UD71 204 aaPredicted RBP23.92■■□□□ 1.42
SHKBP1-204ENST00000594862 COL3A1P02461 1466 aaPredicted RBP23.92■■□□□ 1.42
SHKBP1-204ENST00000594862 ERVV-2B6SEH9 535 aa23.91■■□□□ 1.42
SHKBP1-204ENST00000594862 ZNF827Q17R98 1081 aa23.91■■□□□ 1.42
SHKBP1-204ENST00000594862 MTFR1LQ9H019 292 aa23.91■■□□□ 1.42
SHKBP1-204ENST00000594862 PIGBQ92521 554 aa23.9■■□□□ 1.42
SHKBP1-204ENST00000594862 SLC16A10Q8TF71 515 aa23.89■■□□□ 1.41
SHKBP1-204ENST00000594862 TFCP2L1Q9NZI6 479 aa23.89■■□□□ 1.41
SHKBP1-204ENST00000594862 TAF1LQ8IZX4 1826 aa23.89■■□□□ 1.41
SHKBP1-204ENST00000594862 CNGB1Q14028 1251 aaPredicted RBP23.88■■□□□ 1.41
SHKBP1-204ENST00000594862 ZBTB7AO95365 584 aa23.87■■□□□ 1.41
SHKBP1-204ENST00000594862 TUBGCP6Q96RT7 1819 aa23.87■■□□□ 1.41
SHKBP1-204ENST00000594862 KDM6AO15550 1401 aaPredicted RBP23.86■■□□□ 1.41
SHKBP1-204ENST00000594862 PDGFDQ9GZP0 370 aaPredicted RBP23.86■■□□□ 1.41
SHKBP1-204ENST00000594862 ZNF831Q5JPB2 1677 aa23.85■■□□□ 1.41
SHKBP1-204ENST00000594862 KCNQ4P56696 695 aa23.84■■□□□ 1.41
SHKBP1-204ENST00000594862 AKAP4Q5JQC9 854 aa23.84■■□□□ 1.41
SHKBP1-204ENST00000594862 FLAD1Q8NFF5 587 aa23.84■■□□□ 1.41
SHKBP1-204ENST00000594862 C4BP0C0L5 1744 aa23.84■■□□□ 1.41
SHKBP1-204ENST00000594862 UTRNP46939 3433 aa23.84■■□□□ 1.41
SHKBP1-204ENST00000594862 PNPLA7Q6ZV29 1317 aa23.84■■□□□ 1.41
SHKBP1-204ENST00000594862 SCN11AQ9UI33 1791 aa23.83■■□□□ 1.41
SHKBP1-204ENST00000594862 HMOX1P09601 288 aa23.83■■□□□ 1.41
SHKBP1-204ENST00000594862 YY1P25490 414 aa23.83■■□□□ 1.41
SHKBP1-204ENST00000594862 CABP4P57796 275 aa23.83■■□□□ 1.41
SHKBP1-204ENST00000594862 NUDCQ9Y266 331 aa23.83■■□□□ 1.41
SHKBP1-204ENST00000594862 LOC102724428A0A0B4J2F2 783 aa23.82■■□□□ 1.4
SHKBP1-204ENST00000594862 U2SURPO15042 1029 aaKnown RBP23.82■■□□□ 1.4
SHKBP1-204ENST00000594862 SIK1P57059 783 aa23.82■■□□□ 1.4
SHKBP1-204ENST00000594862 PPP2R1AP30153 589 aa23.81■■□□□ 1.4
SHKBP1-204ENST00000594862 ATF5Q9Y2D1 282 aaPredicted RBP23.81■■□□□ 1.4
SHKBP1-204ENST00000594862 PTGER2P43116 358 aa23.8■■□□□ 1.4
SHKBP1-204ENST00000594862 COL24A1Q17RW2 1714 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms