RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 API5Q9BZZ5 524 aaKnown RBP14.71□□□□□ -0.05
VRK3-208ENST00000594104 PTPRUQ92729 1446 aa14.71□□□□□ -0.06
VRK3-208ENST00000594104 RRS1Q15050 365 aaKnown RBP14.7□□□□□ -0.06
VRK3-208ENST00000594104 MBIPQ9NS73 344 aa14.7□□□□□ -0.06
VRK3-208ENST00000594104 NCKAP5LQ9HCH0 1330 aa14.7□□□□□ -0.06
VRK3-208ENST00000594104 EIF4A2Q14240 407 aaKnown RBP14.7□□□□□ -0.06
VRK3-208ENST00000594104 AMOTL2Q9Y2J4 779 aa14.7□□□□□ -0.06
VRK3-208ENST00000594104 LAS1LQ9Y4W2 734 aaKnown RBP14.7□□□□□ -0.06
VRK3-208ENST00000594104 ANKARQ7Z5J8 1434 aa14.69□□□□□ -0.06
VRK3-208ENST00000594104 NUCB1Q02818 461 aa14.68□□□□□ -0.06
VRK3-208ENST00000594104 TWISTNBQ3B726 338 aaPredicted RBP14.68□□□□□ -0.06
VRK3-208ENST00000594104 GCC1Q96CN9 775 aa14.68□□□□□ -0.06
VRK3-208ENST00000594104 KIAA0232Q92628 1395 aa14.68□□□□□ -0.06
VRK3-208ENST00000594104 ZBTB7BO15156 539 aaPredicted RBP14.68□□□□□ -0.06
VRK3-208ENST00000594104 TBC1D32Q96NH3 1257 aa14.68□□□□□ -0.06
VRK3-208ENST00000594104 ABCC4O15439 1325 aa14.68□□□□□ -0.06
VRK3-208ENST00000594104 ARHGEF10O15013 1369 aa14.68□□□□□ -0.06
VRK3-208ENST00000594104 NALCNQ8IZF0 1738 aa14.68□□□□□ -0.06
VRK3-208ENST00000594104 PDIA4P13667 645 aaKnown RBP14.67□□□□□ -0.06
VRK3-208ENST00000594104 CHL1O00533 1208 aa14.66□□□□□ -0.06
VRK3-208ENST00000594104 EIF5BO60841 1220 aaKnown RBP14.66□□□□□ -0.06
VRK3-208ENST00000594104 NECTIN2Q92692 538 aa14.66□□□□□ -0.06
VRK3-208ENST00000594104 SULT6B1Q6IMI4 303 aa14.66□□□□□ -0.06
VRK3-208ENST00000594104 SLC26A8Q96RN1 970 aa14.66□□□□□ -0.06
VRK3-208ENST00000594104 SBNO1A3KN83 1393 aa14.65□□□□□ -0.06
VRK3-208ENST00000594104 TSPYL6Q8N831 410 aa14.65□□□□□ -0.06
VRK3-208ENST00000594104 THUMPD2Q9BTF0 503 aaKnown RBP14.65□□□□□ -0.06
VRK3-208ENST00000594104 SEC24BO95487 1268 aa14.64□□□□□ -0.07
VRK3-208ENST00000594104 CEBPAP49715 358 aaPredicted RBP14.64□□□□□ -0.07
VRK3-208ENST00000594104 FLT4P35916 1363 aa14.64□□□□□ -0.07
VRK3-208ENST00000594104 HTATSF1O43719 755 aaKnown RBP14.64□□□□□ -0.07
VRK3-208ENST00000594104 C8orf58Q8NAV2 365 aa14.64□□□□□ -0.07
VRK3-208ENST00000594104 RGPD1P0DJD0 1748 aa14.63□□□□□ -0.07
VRK3-208ENST00000594104 CHD1LQ86WJ1 897 aa14.63□□□□□ -0.07
VRK3-208ENST00000594104 RIMS1Q86UR5 1692 aaKnown RBP14.63□□□□□ -0.07
VRK3-208ENST00000594104 INTS3Q68E01 1043 aaKnown RBP14.62□□□□□ -0.07
VRK3-208ENST00000594104 NGDNQ8NEJ9 315 aaKnown RBP14.62□□□□□ -0.07
VRK3-208ENST00000594104 XRN1Q8IZH2 1706 aaKnown RBP14.62□□□□□ -0.07
VRK3-208ENST00000594104 KDRP35968 1356 aa14.62□□□□□ -0.07
VRK3-208ENST00000594104 PTPRCP08575 1304 aa14.62□□□□□ -0.07
VRK3-208ENST00000594104 NFKBIBQ15653 356 aa14.61□□□□□ -0.07
VRK3-208ENST00000594104 SLC4A3P48751 1232 aa14.61□□□□□ -0.07
VRK3-208ENST00000594104 FER1L4A9Z1Z3 1794 aa14.61□□□□□ -0.07
VRK3-208ENST00000594104 SOS1Q07889 1333 aaPredicted RBP14.6□□□□□ -0.07
VRK3-208ENST00000594104 MAP3K19Q56UN5 1328 aa14.6□□□□□ -0.07
VRK3-208ENST00000594104 DLG5Q8TDM6 1919 aa14.6□□□□□ -0.07
VRK3-208ENST00000594104 HSP90AB2PQ58FF8 381 aa14.6□□□□□ -0.07
VRK3-208ENST00000594104 BMP2KLQ5H9B9 411 aa14.6□□□□□ -0.07
VRK3-208ENST00000594104 AEBP1Q8IUX7 1158 aa14.6□□□□□ -0.07
VRK3-208ENST00000594104 GAS2L2Q8NHY3 880 aa14.6□□□□□ -0.07
VRK3-208ENST00000594104 CRB1P82279 1406 aa14.59□□□□□ -0.07
VRK3-208ENST00000594104 BABAM1Q9NWV8 329 aa14.59□□□□□ -0.07
VRK3-208ENST00000594104 PEAK1Q9H792 1746 aa14.59□□□□□ -0.07
VRK3-208ENST00000594104 FAM83GA6ND36 823 aa14.58□□□□□ -0.07
VRK3-208ENST00000594104 IGSF1Q8N6C5 1336 aa14.58□□□□□ -0.08
VRK3-208ENST00000594104 C22orf23Q9BZE7 217 aa14.58□□□□□ -0.08
VRK3-208ENST00000594104 USP54Q70EL1 1684 aa14.57□□□□□ -0.08
VRK3-208ENST00000594104 STK25O00506 426 aa14.57□□□□□ -0.08
VRK3-208ENST00000594104 AMPHP49418 695 aa14.57□□□□□ -0.08
VRK3-208ENST00000594104 RTF1Q92541 710 aaKnown RBP14.57□□□□□ -0.08
VRK3-208ENST00000594104 ELL2O00472 640 aaPredicted RBP14.57□□□□□ -0.08
VRK3-208ENST00000594104 RPAP2Q8IXW5 612 aaPredicted RBP14.57□□□□□ -0.08
VRK3-208ENST00000594104 DCTN1Q14203 1278 aa14.56□□□□□ -0.08
VRK3-208ENST00000594104 NUTM2FA1L443 756 aa14.56□□□□□ -0.08
VRK3-208ENST00000594104 ANKRD45Q5TZF3 282 aa14.56□□□□□ -0.08
VRK3-208ENST00000594104 APBB1O00213 710 aa14.55□□□□□ -0.08
VRK3-208ENST00000594104 RBM25P49756 843 aaKnown RBP14.55□□□□□ -0.08
VRK3-208ENST00000594104 LNPKQ9C0E8 428 aa14.55□□□□□ -0.08
VRK3-208ENST00000594104 DCTPP1Q9H773 170 aa14.55□□□□□ -0.08
VRK3-208ENST00000594104 RTL1A6NKG5 1358 aa14.55□□□□□ -0.08
VRK3-208ENST00000594104 SIRT2Q8IXJ6 389 aa14.54□□□□□ -0.08
VRK3-208ENST00000594104 CEP170BQ9Y4F5 1589 aaPredicted RBP14.54□□□□□ -0.08
VRK3-208ENST00000594104 KCNA6P17658 529 aa14.54□□□□□ -0.08
VRK3-208ENST00000594104 NLRP6P59044 892 aa14.54□□□□□ -0.08
VRK3-208ENST00000594104 ANKLE2Q86XL3 938 aa14.54□□□□□ -0.08
VRK3-208ENST00000594104 ANKRD44Q8N8A2 993 aa14.54□□□□□ -0.08
VRK3-208ENST00000594104 EYA1Q99502 592 aa14.54□□□□□ -0.08
VRK3-208ENST00000594104 WDR70Q9NW82 654 aa14.54□□□□□ -0.08
VRK3-208ENST00000594104 FMN2Q9NZ56 1722 aa14.53□□□□□ -0.08
VRK3-208ENST00000594104 MTHFSDQ2M296 383 aaKnown RBP14.53□□□□□ -0.08
VRK3-208ENST00000594104 MCM10Q7L590 875 aa14.53□□□□□ -0.08
VRK3-208ENST00000594104 TBC1D2Q9BYX2 928 aa14.53□□□□□ -0.08
VRK3-208ENST00000594104 ANTXR1Q9H6X2 564 aa14.53□□□□□ -0.08
VRK3-208ENST00000594104 GSE1Q14687 1217 aa14.52□□□□□ -0.08
VRK3-208ENST00000594104 SNX21Q969T3 373 aa14.52□□□□□ -0.08
VRK3-208ENST00000594104 CHMP4AQ9BY43 222 aa14.52□□□□□ -0.08
VRK3-208ENST00000594104 PIK3C2AO00443 1686 aa14.52□□□□□ -0.09
VRK3-208ENST00000594104 RGS12O14924 1447 aa14.52□□□□□ -0.09
VRK3-208ENST00000594104 CCT4P50991 539 aaKnown RBP14.51□□□□□ -0.09
VRK3-208ENST00000594104 MFAP1P55081 439 aaKnown RBP14.51□□□□□ -0.09
VRK3-208ENST00000594104 IL27Q8NEV9 243 aa14.51□□□□□ -0.09
VRK3-208ENST00000594104 RIOK3O14730 519 aaKnown RBP14.51□□□□□ -0.09
VRK3-208ENST00000594104 HOXC9P31274 260 aa14.51□□□□□ -0.09
VRK3-208ENST00000594104 TSPYL4Q9UJ04 414 aa14.51□□□□□ -0.09
VRK3-208ENST00000594104 GNAT3A8MTJ3 354 aa14.5□□□□□ -0.09
VRK3-208ENST00000594104 POLA2Q14181 598 aa14.5□□□□□ -0.09
VRK3-208ENST00000594104 GPBP1L1Q9HC44 474 aaPredicted RBP14.5□□□□□ -0.09
VRK3-208ENST00000594104 PHF8Q9UPP1 1060 aa14.5□□□□□ -0.09
VRK3-208ENST00000594104 HMMRO75330 724 aa14.49□□□□□ -0.09
VRK3-208ENST00000594104 CCDC30Q5VVM6 783 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms