RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 KIF1BO60333 1816 aa12.09□□□□□ -0.47
LIG3-216ENST00000593099 PTPRMP28827 1452 aa12.09□□□□□ -0.47
LIG3-216ENST00000593099 HSCBQ8IWL3 235 aa12.08□□□□□ -0.47
LIG3-216ENST00000593099 DIAPH3Q9NSV4 1193 aa12.08□□□□□ -0.47
LIG3-216ENST00000593099 CLASRPQ8N2M8 674 aaKnown RBP12.08□□□□□ -0.48
LIG3-216ENST00000593099 HYPKQ9NX55 129 aa12.08□□□□□ -0.48
LIG3-216ENST00000593099 BCAR3O75815 825 aa12.08□□□□□ -0.48
LIG3-216ENST00000593099 AMOTL1Q8IY63 956 aa12.08□□□□□ -0.48
LIG3-216ENST00000593099 UNC13BO14795 1591 aa12.08□□□□□ -0.48
LIG3-216ENST00000593099 ERC2O15083 957 aa12.08□□□□□ -0.48
LIG3-216ENST00000593099 PER1O15534 1290 aaPredicted RBP12.08□□□□□ -0.48
LIG3-216ENST00000593099 LMTK2Q8IWU2 1503 aa12.08□□□□□ -0.48
LIG3-216ENST00000593099 PARD3Q8TEW0 1356 aa12.08□□□□□ -0.48
LIG3-216ENST00000593099 PCDH11XQ9BZA7 1347 aa12.07□□□□□ -0.48
LIG3-216ENST00000593099 PCDH11YQ9BZA8 1340 aa12.07□□□□□ -0.48
LIG3-216ENST00000593099 INO80Q9ULG1 1556 aaPredicted RBP12.07□□□□□ -0.48
LIG3-216ENST00000593099 FAM83GA6ND36 823 aa12.07□□□□□ -0.48
LIG3-216ENST00000593099 CCDC57Q2TAC2 916 aa12.07□□□□□ -0.48
LIG3-216ENST00000593099 DCAF5Q96JK2 942 aa12.07□□□□□ -0.48
LIG3-216ENST00000593099 MPHOSPH8Q99549 860 aa12.07□□□□□ -0.48
LIG3-216ENST00000593099 VSIG10Q8N0Z9 540 aa12.07□□□□□ -0.48
LIG3-216ENST00000593099 RUFY2Q8WXA3 655 aa12.07□□□□□ -0.48
LIG3-216ENST00000593099 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.07□□□□□ -0.48
LIG3-216ENST00000593099 NPC1L1Q9UHC9 1359 aa12.07□□□□□ -0.48
LIG3-216ENST00000593099 A0A087WZG4 1122 aa12.07□□□□□ -0.48
LIG3-216ENST00000593099 RNF17Q9BXT8 1623 aaKnown RBP12.06□□□□□ -0.48
LIG3-216ENST00000593099 MTHFSDQ2M296 383 aaKnown RBP12.06□□□□□ -0.48
LIG3-216ENST00000593099 ERC1Q8IUD2 1116 aa12.06□□□□□ -0.48
LIG3-216ENST00000593099 FAM98CQ17RN3 349 aaKnown RBP12.06□□□□□ -0.48
LIG3-216ENST00000593099 TRIM34Q9BYJ4 488 aa12.06□□□□□ -0.48
LIG3-216ENST00000593099 IL16Q14005 1332 aa12.06□□□□□ -0.48
LIG3-216ENST00000593099 FANCIQ9NVI1 1328 aa12.06□□□□□ -0.48
LIG3-216ENST00000593099 ADGRB3O60242 1522 aa12.06□□□□□ -0.48
LIG3-216ENST00000593099 MFAP1P55081 439 aaKnown RBP12.05□□□□□ -0.48
LIG3-216ENST00000593099 ALDH1L2Q3SY69 923 aa12.05□□□□□ -0.48
LIG3-216ENST00000593099 NAP1L5Q96NT1 182 aaPredicted RBP12.05□□□□□ -0.48
LIG3-216ENST00000593099 ABCA6Q8N139 1617 aa12.05□□□□□ -0.48
LIG3-216ENST00000593099 ATP6V1AP38606 617 aa12.05□□□□□ -0.48
LIG3-216ENST00000593099 RFC4P35249 363 aa12.04□□□□□ -0.48
LIG3-216ENST00000593099 BRINP3Q76B58 766 aa12.04□□□□□ -0.48
LIG3-216ENST00000593099 GNL3LQ9NVN8 582 aaKnown RBP12.04□□□□□ -0.48
LIG3-216ENST00000593099 SLC39A6Q13433 755 aa12.04□□□□□ -0.48
LIG3-216ENST00000593099 CERKQ8TCT0 537 aa12.04□□□□□ -0.48
LIG3-216ENST00000593099 LNPKQ9C0E8 428 aa12.04□□□□□ -0.48
LIG3-216ENST00000593099 SYNMO15061 1565 aa12.03□□□□□ -0.48
LIG3-216ENST00000593099 MYD88Q99836 296 aa12.03□□□□□ -0.48
LIG3-216ENST00000593099 NBPF14Q5TI25 921 aa12.03□□□□□ -0.48
LIG3-216ENST00000593099 NFATC2IPQ8NCF5 419 aa12.03□□□□□ -0.48
LIG3-216ENST00000593099 SSH1Q8WYL5 1049 aa12.03□□□□□ -0.48
LIG3-216ENST00000593099 MBIPQ9NS73 344 aa12.03□□□□□ -0.48
LIG3-216ENST00000593099 APPP05067 770 aa12.03□□□□□ -0.48
LIG3-216ENST00000593099 IGHMBP2P38935 993 aaKnown RBP12.03□□□□□ -0.48
LIG3-216ENST00000593099 ZBTB3Q9H5J0 574 aa12.03□□□□□ -0.48
LIG3-216ENST00000593099 TRPC5Q9UL62 973 aaPredicted RBP12.03□□□□□ -0.48
LIG3-216ENST00000593099 CROCC2H7BZ55 1655 aa12.03□□□□□ -0.48
LIG3-216ENST00000593099 CLTCQ00610 1675 aaKnown RBP12.03□□□□□ -0.48
LIG3-216ENST00000593099 PRR36Q9H6K5 1346 aa12.02□□□□□ -0.48
LIG3-216ENST00000593099 DNAAF4Q8WXU2 420 aa12.02□□□□□ -0.48
LIG3-216ENST00000593099 TRMT112Q9UI30 125 aaKnown RBP12.02□□□□□ -0.48
LIG3-216ENST00000593099 ZRSR1Q15695 479 aaKnown RBP12.02□□□□□ -0.48
LIG3-216ENST00000593099 ZMYM4Q5VZL5 1548 aa12.02□□□□□ -0.49
LIG3-216ENST00000593099 MAP3K5Q99683 1374 aa12.02□□□□□ -0.49
LIG3-216ENST00000593099 PHF14O94880 888 aa12.02□□□□□ -0.49
LIG3-216ENST00000593099 C1orf115Q9H7X2 142 aa12.02□□□□□ -0.49
LIG3-216ENST00000593099 CEP126Q9P2H0 1117 aa12.02□□□□□ -0.49
LIG3-216ENST00000593099 KIDINS220Q9ULH0 1771 aa12.02□□□□□ -0.49
LIG3-216ENST00000593099 IL13P35225 146 aa12.02□□□□□ -0.49
LIG3-216ENST00000593099 TBC1D2BQ9UPU7 963 aa12.02□□□□□ -0.49
LIG3-216ENST00000593099 CLTCL1P53675 1640 aa12.02□□□□□ -0.49
LIG3-216ENST00000593099 GNL2Q13823 731 aaKnown RBP12.01□□□□□ -0.49
LIG3-216ENST00000593099 MVPQ14764 893 aaKnown RBP12.01□□□□□ -0.49
LIG3-216ENST00000593099 ADGRL3Q9HAR2 1447 aa12.01□□□□□ -0.49
LIG3-216ENST00000593099 KAT6BQ8WYB5 2073 aa12.01□□□□□ -0.49
LIG3-216ENST00000593099 RNMTO43148 476 aaKnown RBP12.01□□□□□ -0.49
LIG3-216ENST00000593099 SRGAP3O43295 1099 aa12.01□□□□□ -0.49
LIG3-216ENST00000593099 PDE4CQ08493 712 aa12.01□□□□□ -0.49
LIG3-216ENST00000593099 FLIIQ13045 1269 aa12.01□□□□□ -0.49
LIG3-216ENST00000593099 ZNF772Q68DY9 489 aaPredicted RBP12.01□□□□□ -0.49
LIG3-216ENST00000593099 ANKARQ7Z5J8 1434 aa12.01□□□□□ -0.49
LIG3-216ENST00000593099 CCDC27Q2M243 656 aa12.01□□□□□ -0.49
LIG3-216ENST00000593099 CCDC158Q5M9N0 1113 aa12.01□□□□□ -0.49
LIG3-216ENST00000593099 NBPF6Q5VWK0 638 aa12.01□□□□□ -0.49
LIG3-216ENST00000593099 NBPF4Q96M43 638 aa12.01□□□□□ -0.49
LIG3-216ENST00000593099 SIL1Q9H173 461 aa12□□□□□ -0.49
LIG3-216ENST00000593099 GPTP24298 496 aa12□□□□□ -0.49
LIG3-216ENST00000593099 RARSP54136 660 aaKnown RBP12□□□□□ -0.49
LIG3-216ENST00000593099 CCDC85AQ96PX6 553 aaPredicted RBP12□□□□□ -0.49
LIG3-216ENST00000593099 QTRT2Q9H974 415 aaKnown RBP12□□□□□ -0.49
LIG3-216ENST00000593099 LRRIQ1Q96JM4 1722 aa12□□□□□ -0.49
LIG3-216ENST00000593099 CAMSAP1Q5T5Y3 1602 aa12□□□□□ -0.49
LIG3-216ENST00000593099 KIAA0232Q92628 1395 aa11.99□□□□□ -0.49
LIG3-216ENST00000593099 WASHC4Q2M389 1173 aa11.99□□□□□ -0.49
LIG3-216ENST00000593099 PHACTR3Q96KR7 559 aa11.99□□□□□ -0.49
LIG3-216ENST00000593099 RSPH6AQ9H0K4 717 aa11.99□□□□□ -0.49
LIG3-216ENST00000593099 CEP152O94986 1710 aa11.99□□□□□ -0.49
LIG3-216ENST00000593099 PPP1R42Q7Z4L9 355 aa11.99□□□□□ -0.49
LIG3-216ENST00000593099 ARHGEF25Q86VW2 580 aa11.99□□□□□ -0.49
LIG3-216ENST00000593099 GCC1Q96CN9 775 aa11.99□□□□□ -0.49
LIG3-216ENST00000593099 USP6P35125 1406 aa11.99□□□□□ -0.49
LIG3-216ENST00000593099 ATP7BP35670 1465 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms