RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 PTF1AQ7RTS3 328 aa14.99□□□□□ -0.01
LIG3-214ENST00000592244 SYTL4Q96C24 671 aaPredicted RBP14.99□□□□□ -0.01
LIG3-214ENST00000592244 KIF7Q2M1P5 1343 aa14.98□□□□□ -0.01
LIG3-214ENST00000592244 SPG7Q9UQ90 795 aa14.98□□□□□ -0.01
LIG3-214ENST00000592244 RGPD3A6NKT7 1758 aaPredicted RBP14.97□□□□□ -0.01
LIG3-214ENST00000592244 RGPD4Q7Z3J3 1758 aa14.97□□□□□ -0.01
LIG3-214ENST00000592244 MEGF6O75095 1541 aa14.97□□□□□ -0.01
LIG3-214ENST00000592244 PRIM1P49642 420 aaKnown RBP14.96□□□□□ -0.01
LIG3-214ENST00000592244 SLC27A3Q5K4L6 730 aa14.96□□□□□ -0.01
LIG3-214ENST00000592244 SPON1Q9HCB6 807 aa14.96□□□□□ -0.01
LIG3-214ENST00000592244 SBF2Q86WG5 1849 aa14.95□□□□□ -0.02
LIG3-214ENST00000592244 PROM2Q8N271 834 aa14.95□□□□□ -0.02
LIG3-214ENST00000592244 EYA1Q99502 592 aa14.95□□□□□ -0.02
LIG3-214ENST00000592244 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.95□□□□□ -0.02
LIG3-214ENST00000592244 RREB1Q92766 1687 aa14.95□□□□□ -0.02
LIG3-214ENST00000592244 PPP1R1BQ9UD71 204 aaPredicted RBP14.94□□□□□ -0.02
LIG3-214ENST00000592244 LRP5O75197 1615 aa14.94□□□□□ -0.02
LIG3-214ENST00000592244 NHSQ6T4R5 1651 aa14.93□□□□□ -0.02
LIG3-214ENST00000592244 EIF4A2Q14240 407 aaKnown RBP14.93□□□□□ -0.02
LIG3-214ENST00000592244 SLC15A2Q16348 729 aa14.93□□□□□ -0.02
LIG3-214ENST00000592244 PLEKHG2Q9H7P9 1386 aa14.93□□□□□ -0.02
LIG3-214ENST00000592244 NUP188Q5SRE5 1749 aa14.92□□□□□ -0.02
LIG3-214ENST00000592244 AMER1Q5JTC6 1135 aaPredicted RBP14.92□□□□□ -0.02
LIG3-214ENST00000592244 ANO8Q9HCE9 1232 aaPredicted RBP14.92□□□□□ -0.02
LIG3-214ENST00000592244 NCAPD2Q15021 1401 aa14.91□□□□□ -0.02
LIG3-214ENST00000592244 IFNL2Q8IZJ0 200 aa14.9□□□□□ -0.02
LIG3-214ENST00000592244 SMARCC1Q92922 1105 aaPredicted RBP14.9□□□□□ -0.02
LIG3-214ENST00000592244 ANKRD26Q9UPS8 1709 aa14.89□□□□□ -0.03
LIG3-214ENST00000592244 CYP27B1O15528 508 aa14.89□□□□□ -0.03
LIG3-214ENST00000592244 HSP90AB1P08238 724 aaKnown RBP14.89□□□□□ -0.03
LIG3-214ENST00000592244 AMOTQ4VCS5 1084 aa14.89□□□□□ -0.03
LIG3-214ENST00000592244 PLEKHO1Q53GL0 409 aaPredicted RBP14.89□□□□□ -0.03
LIG3-214ENST00000592244 CCNL1Q9UK58 526 aaPredicted RBP14.89□□□□□ -0.03
LIG3-214ENST00000592244 IGSF1Q8N6C5 1336 aa14.89□□□□□ -0.03
LIG3-214ENST00000592244 NKX1-1Q15270 411 aaPredicted RBP14.88□□□□□ -0.03
LIG3-214ENST00000592244 MPRIPQ6WCQ1 1025 aa14.88□□□□□ -0.03
LIG3-214ENST00000592244 KAT6BQ8WYB5 2073 aa14.88□□□□□ -0.03
LIG3-214ENST00000592244 DCAF8L1A6NGE4 600 aa14.87□□□□□ -0.03
LIG3-214ENST00000592244 PER1O15534 1290 aaPredicted RBP14.87□□□□□ -0.03
LIG3-214ENST00000592244 CC2D1BQ5T0F9 858 aaKnown RBP14.87□□□□□ -0.03
LIG3-214ENST00000592244 MAP2P11137 1827 aaKnown RBP14.87□□□□□ -0.03
LIG3-214ENST00000592244 NPC1L1Q9UHC9 1359 aa14.86□□□□□ -0.03
LIG3-214ENST00000592244 RGPD2P0DJD1 1756 aa14.86□□□□□ -0.03
LIG3-214ENST00000592244 MTFR1LQ9H019 292 aa14.86□□□□□ -0.03
LIG3-214ENST00000592244 LRRC4BQ9NT99 713 aa14.86□□□□□ -0.03
LIG3-214ENST00000592244 TMOD3Q9NYL9 352 aa14.86□□□□□ -0.03
LIG3-214ENST00000592244 TFCP2L1Q9NZI6 479 aa14.86□□□□□ -0.03
LIG3-214ENST00000592244 BTAF1O14981 1849 aa14.85□□□□□ -0.03
LIG3-214ENST00000592244 ZBTB7AO95365 584 aa14.85□□□□□ -0.03
LIG3-214ENST00000592244 PHKG2P15735 406 aa14.85□□□□□ -0.03
LIG3-214ENST00000592244 MTHFSP49914 203 aa14.85□□□□□ -0.03
LIG3-214ENST00000592244 C1orf141Q5JVX7 400 aa14.85□□□□□ -0.03
LIG3-214ENST00000592244 SLC16A10Q8TF71 515 aa14.85□□□□□ -0.03
LIG3-214ENST00000592244 SULT6B1Q6IMI4 303 aa14.84□□□□□ -0.03
LIG3-214ENST00000592244 PALLDQ8WX93 1383 aa14.84□□□□□ -0.03
LIG3-214ENST00000592244 ZNF530Q6P9A1 599 aaPredicted RBP14.83□□□□□ -0.04
LIG3-214ENST00000592244 AKT1S1Q96B36 256 aa14.83□□□□□ -0.04
LIG3-214ENST00000592244 DCAF5Q96JK2 942 aa14.83□□□□□ -0.04
LIG3-214ENST00000592244 DOT1LQ8TEK3 1739 aa14.83□□□□□ -0.04
LIG3-214ENST00000592244 ERVV-2B6SEH9 535 aa14.82□□□□□ -0.04
LIG3-214ENST00000592244 DIAPH1O60610 1272 aaKnown RBP14.82□□□□□ -0.04
LIG3-214ENST00000592244 IL13P35225 146 aa14.82□□□□□ -0.04
LIG3-214ENST00000592244 ZNF827Q17R98 1081 aa14.82□□□□□ -0.04
LIG3-214ENST00000592244 FLAD1Q8NFF5 587 aa14.82□□□□□ -0.04
LIG3-214ENST00000592244 PIGBQ92521 554 aa14.82□□□□□ -0.04
LIG3-214ENST00000592244 ATF5Q9Y2D1 282 aaPredicted RBP14.82□□□□□ -0.04
LIG3-214ENST00000592244 POLD1P28340 1107 aa14.81□□□□□ -0.04
LIG3-214ENST00000592244 CFAP53Q96M91 514 aa14.81□□□□□ -0.04
LIG3-214ENST00000592244 PKD1L3Q7Z443 1732 aa14.8□□□□□ -0.04
LIG3-214ENST00000592244 SHANK3Q9BYB0 1731 aa14.8□□□□□ -0.04
LIG3-214ENST00000592244 MSH5O43196 834 aa14.8□□□□□ -0.04
LIG3-214ENST00000592244 CNGB1Q14028 1251 aaPredicted RBP14.8□□□□□ -0.04
LIG3-214ENST00000592244 PDGFDQ9GZP0 370 aaPredicted RBP14.8□□□□□ -0.04
LIG3-214ENST00000592244 KDRP35968 1356 aa14.79□□□□□ -0.04
LIG3-214ENST00000592244 KCNQ4P56696 695 aa14.79□□□□□ -0.04
LIG3-214ENST00000592244 CABP4P57796 275 aa14.79□□□□□ -0.04
LIG3-214ENST00000592244 AK7Q96M32 723 aa14.79□□□□□ -0.04
LIG3-214ENST00000592244 LOC102724428A0A0B4J2F2 783 aa14.78□□□□□ -0.04
LIG3-214ENST00000592244 PTGER2P43116 358 aa14.78□□□□□ -0.04
LIG3-214ENST00000592244 SIK1P57059 783 aa14.78□□□□□ -0.04
LIG3-214ENST00000592244 AEBP1Q8IUX7 1158 aa14.78□□□□□ -0.04
LIG3-214ENST00000592244 PAPPAQ13219 1627 aa14.77□□□□□ -0.04
LIG3-214ENST00000592244 PNPLA7Q6ZV29 1317 aa14.77□□□□□ -0.04
LIG3-214ENST00000592244 ARXQ96QS3 562 aa14.77□□□□□ -0.05
LIG3-214ENST00000592244 NUDCQ9Y266 331 aa14.77□□□□□ -0.05
LIG3-214ENST00000592244 CASZ1Q86V15 1759 aa14.76□□□□□ -0.05
LIG3-214ENST00000592244 U2SURPO15042 1029 aaKnown RBP14.76□□□□□ -0.05
LIG3-214ENST00000592244 AKAP4Q5JQC9 854 aa14.76□□□□□ -0.05
LIG3-214ENST00000592244 ASAP1Q9ULH1 1129 aa14.76□□□□□ -0.05
LIG3-214ENST00000592244 HMOX1P09601 288 aa14.75□□□□□ -0.05
LIG3-214ENST00000592244 ATP6V1AP38606 617 aa14.75□□□□□ -0.05
LIG3-214ENST00000592244 ATG3Q9NT62 314 aa14.74□□□□□ -0.05
LIG3-214ENST00000592244 LY75O60449 1722 aa14.74□□□□□ -0.05
LIG3-214ENST00000592244 SGIP1Q9BQI5 828 aa14.73□□□□□ -0.05
LIG3-214ENST00000592244 RBM42Q9BTD8 480 aaKnown RBP14.73□□□□□ -0.05
LIG3-214ENST00000592244 SSFA2P28290 1259 aa14.72□□□□□ -0.05
LIG3-214ENST00000592244 COL23A1Q86Y22 540 aaPredicted RBP14.72□□□□□ -0.05
LIG3-214ENST00000592244 GAS2L2Q8NHY3 880 aa14.72□□□□□ -0.05
LIG3-214ENST00000592244 FHDC1Q9C0D6 1143 aaPredicted RBP14.72□□□□□ -0.05
LIG3-214ENST00000592244 NFATC2IPQ8NCF5 419 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms