RNA–Protein interactions for RNA: ENST00000591849.5

BRCA1-227, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-227ENST00000591849 SPG7Q9UQ90 795 aa13.62□□□□□ -0.23
BRCA1-227ENST00000591849 SYTL4Q96C24 671 aaPredicted RBP13.61□□□□□ -0.23
BRCA1-227ENST00000591849 LRRC37A3O60309 1634 aa13.61□□□□□ -0.23
BRCA1-227ENST00000591849 CAMKK2Q96RR4 588 aa13.6□□□□□ -0.23
BRCA1-227ENST00000591849 PEAK1Q9H792 1746 aa13.6□□□□□ -0.23
BRCA1-227ENST00000591849 PSDA5PKW4 1024 aaPredicted RBP13.59□□□□□ -0.23
BRCA1-227ENST00000591849 KCNQ2O43526 872 aa13.59□□□□□ -0.23
BRCA1-227ENST00000591849 NBPF14Q5TI25 921 aa13.59□□□□□ -0.23
BRCA1-227ENST00000591849 NPC1L1Q9UHC9 1359 aa13.58□□□□□ -0.23
BRCA1-227ENST00000591849 CFAP53Q96M91 514 aa13.58□□□□□ -0.24
BRCA1-227ENST00000591849 PCDH11XQ9BZA7 1347 aa13.58□□□□□ -0.24
BRCA1-227ENST00000591849 PCDH11YQ9BZA8 1340 aa13.58□□□□□ -0.24
BRCA1-227ENST00000591849 FAM208AQ9UK61 1670 aaKnown RBP13.57□□□□□ -0.24
BRCA1-227ENST00000591849 PLSCR1O15162 318 aa13.57□□□□□ -0.24
BRCA1-227ENST00000591849 DIAPH1O60610 1272 aaKnown RBP13.57□□□□□ -0.24
BRCA1-227ENST00000591849 PRIM1P49642 420 aaKnown RBP13.57□□□□□ -0.24
BRCA1-227ENST00000591849 DDX10Q13206 875 aaKnown RBP13.57□□□□□ -0.24
BRCA1-227ENST00000591849 PLEKHO1Q53GL0 409 aaPredicted RBP13.57□□□□□ -0.24
BRCA1-227ENST00000591849 PTF1AQ7RTS3 328 aa13.57□□□□□ -0.24
BRCA1-227ENST00000591849 MEGF6O75095 1541 aa13.57□□□□□ -0.24
BRCA1-227ENST00000591849 BCL9O00512 1426 aa13.56□□□□□ -0.24
BRCA1-227ENST00000591849 IL13P35225 146 aa13.56□□□□□ -0.24
BRCA1-227ENST00000591849 SULT6B1Q6IMI4 303 aa13.56□□□□□ -0.24
BRCA1-227ENST00000591849 MAP2P11137 1827 aaKnown RBP13.55□□□□□ -0.24
BRCA1-227ENST00000591849 U2SURPO15042 1029 aaKnown RBP13.55□□□□□ -0.24
BRCA1-227ENST00000591849 R3HDM1Q15032 1099 aaKnown RBP13.55□□□□□ -0.24
BRCA1-227ENST00000591849 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.55□□□□□ -0.244e-6■■■■■ 27.4
BRCA1-227ENST00000591849 IGSF1Q8N6C5 1336 aa13.55□□□□□ -0.24
BRCA1-227ENST00000591849 ANKRD26Q9UPS8 1709 aa13.55□□□□□ -0.24
BRCA1-227ENST00000591849 AMOTQ4VCS5 1084 aa13.54□□□□□ -0.24
BRCA1-227ENST00000591849 IFNL2Q8IZJ0 200 aa13.54□□□□□ -0.24
BRCA1-227ENST00000591849 NUDCQ9Y266 331 aa13.54□□□□□ -0.24
BRCA1-227ENST00000591849 CYP27B1O15528 508 aa13.53□□□□□ -0.24
BRCA1-227ENST00000591849 TXNRD1Q16881 649 aa13.53□□□□□ -0.24
BRCA1-227ENST00000591849 C1orf141Q5JVX7 400 aa13.53□□□□□ -0.24
BRCA1-227ENST00000591849 AEBP1Q8IUX7 1158 aa13.53□□□□□ -0.24
BRCA1-227ENST00000591849 HMOX1P09601 288 aa13.52□□□□□ -0.25
BRCA1-227ENST00000591849 PPP2R1AP30153 589 aa13.52□□□□□ -0.25
BRCA1-227ENST00000591849 ZNF530Q6P9A1 599 aaPredicted RBP13.52□□□□□ -0.25
BRCA1-227ENST00000591849 MPRIPQ6WCQ1 1025 aa13.52□□□□□ -0.25
BRCA1-227ENST00000591849 RGPD2P0DJD1 1756 aa13.51□□□□□ -0.25
BRCA1-227ENST00000591849 HSP90AB1P08238 724 aaKnown RBP13.51□□□□□ -0.25
BRCA1-227ENST00000591849 STK32BQ9NY57 414 aa13.51□□□□□ -0.25
BRCA1-227ENST00000591849 PHKG2P15735 406 aa13.5□□□□□ -0.25
BRCA1-227ENST00000591849 KAT6BQ8WYB5 2073 aa13.5□□□□□ -0.25
BRCA1-227ENST00000591849 CASZ1Q86V15 1759 aa13.5□□□□□ -0.25
BRCA1-227ENST00000591849 TMOD3Q9NYL9 352 aa13.49□□□□□ -0.25
BRCA1-227ENST00000591849 NCAPD2Q15021 1401 aa13.48□□□□□ -0.25
BRCA1-227ENST00000591849 NKX1-1Q15270 411 aaPredicted RBP13.48□□□□□ -0.25
BRCA1-227ENST00000591849 RALBP1Q15311 655 aa13.48□□□□□ -0.25
BRCA1-227ENST00000591849 PROM2Q8N271 834 aa13.48□□□□□ -0.25
BRCA1-227ENST00000591849 SMARCC1Q92922 1105 aaPredicted RBP13.48□□□□□ -0.25
BRCA1-227ENST00000591849 U2AF1L5P0DN76 240 aaPredicted RBP13.47□□□□□ -0.25
BRCA1-227ENST00000591849 HMGB2P26583 209 aaKnown RBP13.47□□□□□ -0.25
BRCA1-227ENST00000591849 U2AF1Q01081 240 aaKnown RBP eCLIP13.47□□□□□ -0.25
BRCA1-227ENST00000591849 SLC27A3Q5K4L6 730 aa13.47□□□□□ -0.25
BRCA1-227ENST00000591849 DCAF5Q96JK2 942 aa13.47□□□□□ -0.25
BRCA1-227ENST00000591849 CCNL1Q9UK58 526 aaPredicted RBP13.47□□□□□ -0.25
BRCA1-227ENST00000591849 NHSQ6T4R5 1651 aa13.47□□□□□ -0.25
BRCA1-227ENST00000591849 ZNF316A6NFI3 1004 aaPredicted RBP13.46□□□□□ -0.25
BRCA1-227ENST00000591849 NEFMP07197 916 aa13.46□□□□□ -0.25
BRCA1-227ENST00000591849 CABP4P57796 275 aa13.46□□□□□ -0.25
BRCA1-227ENST00000591849 PIGBQ92521 554 aa13.46□□□□□ -0.25
BRCA1-227ENST00000591849 PLEKHG2Q9H7P9 1386 aa13.45□□□□□ -0.26
BRCA1-227ENST00000591849 ERVV-2B6SEH9 535 aa13.45□□□□□ -0.26
BRCA1-227ENST00000591849 DCAF8L1A6NGE4 600 aa13.44□□□□□ -0.26
BRCA1-227ENST00000591849 KCNQ4P56696 695 aa13.44□□□□□ -0.26
BRCA1-227ENST00000591849 SLC15A2Q16348 729 aa13.44□□□□□ -0.26
BRCA1-227ENST00000591849 AKAP4Q5JQC9 854 aa13.44□□□□□ -0.26
BRCA1-227ENST00000591849 KDRP35968 1356 aa13.44□□□□□ -0.26
BRCA1-227ENST00000591849 MTHFSDQ2M296 383 aaKnown RBP13.43□□□□□ -0.26
BRCA1-227ENST00000591849 GAS2L2Q8NHY3 880 aa13.43□□□□□ -0.26
BRCA1-227ENST00000591849 ANO8Q9HCE9 1232 aaPredicted RBP13.43□□□□□ -0.26
BRCA1-227ENST00000591849 LRRC4BQ9NT99 713 aa13.43□□□□□ -0.26
BRCA1-227ENST00000591849 PRKAR2BP31323 418 aa13.42□□□□□ -0.26
BRCA1-227ENST00000591849 RBM42Q9BTD8 480 aaKnown RBP13.42□□□□□ -0.26
BRCA1-227ENST00000591849 TFCP2L1Q9NZI6 479 aa13.42□□□□□ -0.26
BRCA1-227ENST00000591849 PPP1R1BQ9UD71 204 aaPredicted RBP13.42□□□□□ -0.26
BRCA1-227ENST00000591849 PALLDQ8WX93 1383 aa13.42□□□□□ -0.26
BRCA1-227ENST00000591849 MSH5O43196 834 aa13.41□□□□□ -0.26
BRCA1-227ENST00000591849 FCHSD2O94868 740 aa13.41□□□□□ -0.26
BRCA1-227ENST00000591849 SPON1Q9HCB6 807 aa13.41□□□□□ -0.26
BRCA1-227ENST00000591849 BTAF1O14981 1849 aa13.41□□□□□ -0.26
BRCA1-227ENST00000591849 NFATC2IPQ8NCF5 419 aa13.4□□□□□ -0.26
BRCA1-227ENST00000591849 PNNQ9H307 717 aaKnown RBP13.4□□□□□ -0.26
BRCA1-227ENST00000591849 ASAP1Q9ULH1 1129 aa13.4□□□□□ -0.26
BRCA1-227ENST00000591849 MYBBP1AQ9BQG0 1328 aaKnown RBP13.39□□□□□ -0.27
BRCA1-227ENST00000591849 LOC102724428A0A0B4J2F2 783 aa13.39□□□□□ -0.27
BRCA1-227ENST00000591849 GNAT3A8MTJ3 354 aa13.39□□□□□ -0.27
BRCA1-227ENST00000591849 RNMTO43148 476 aaKnown RBP13.39□□□□□ -0.27
BRCA1-227ENST00000591849 ATP6V1AP38606 617 aa13.39□□□□□ -0.27
BRCA1-227ENST00000591849 SIK1P57059 783 aa13.39□□□□□ -0.27
BRCA1-227ENST00000591849 RTF1Q92541 710 aaKnown RBP13.39□□□□□ -0.27
BRCA1-227ENST00000591849 RSPH6AQ9H0K4 717 aa13.39□□□□□ -0.27
BRCA1-227ENST00000591849 LGR6Q9HBX8 967 aa13.39□□□□□ -0.27
BRCA1-227ENST00000591849 ATG3Q9NT62 314 aa13.39□□□□□ -0.27
BRCA1-227ENST00000591849 PAPPAQ13219 1627 aa13.39□□□□□ -0.27
BRCA1-227ENST00000591849 COL3A1P02461 1466 aaPredicted RBP13.38□□□□□ -0.27
BRCA1-227ENST00000591849 TEFQ10587 303 aa13.38□□□□□ -0.27
BRCA1-227ENST00000591849 ZNF827Q17R98 1081 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 120.3 ms