RNA–Protein interactions for RNA: ENST00000591126.5

SMAD4-212, Transcript of SMAD family member 4, humanhuman

TSL 1 (best)

Gene SMAD4, Length 4,970 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-212ENST00000591126 CCDC47Q96A33 483 aaKnown RBP7.67□□□□□ -1.18
SMAD4-212ENST00000591126 RBM5P52756 815 aaKnown RBP eCLIP7.67□□□□□ -1.18
SMAD4-212ENST00000591126 NBPF6Q5VWK0 638 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 NBPF5PQ86XG9 351 aaPredicted RBP7.67□□□□□ -1.18
SMAD4-212ENST00000591126 NBPF4Q96M43 638 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 CCDC43Q96MW1 224 aaKnown RBP7.67□□□□□ -1.18
SMAD4-212ENST00000591126 SRCIN1Q9C0H9 1055 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 DIAPH3Q9NSV4 1193 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 PTPRTO14522 1441 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 BLMP54132 1417 aaPredicted RBP7.67□□□□□ -1.18
SMAD4-212ENST00000591126 ERVK-7P63135 1459 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 PLEKHG3A1L390 1219 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 TRIM6-TRIM34B2RNG4 842 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 ZKSCAN1P17029 563 aaPredicted RBP7.67□□□□□ -1.18
SMAD4-212ENST00000591126 PARP10Q53GL7 1025 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 ANKARQ7Z5J8 1434 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 SAMD9LQ8IVG5 1584 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 CLASRPQ8N2M8 674 aaKnown RBP7.67□□□□□ -1.18
SMAD4-212ENST00000591126 NLRP3Q96P20 1036 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 TSPOAP1O95153 1857 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 TNNI2P48788 182 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 EIF6P56537 245 aaKnown RBP7.67□□□□□ -1.18
SMAD4-212ENST00000591126 TTLL12Q14166 644 aaPredicted RBP7.67□□□□□ -1.18
SMAD4-212ENST00000591126 GPR162Q16538 588 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 CERS3Q8IU89 383 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 RBM17Q96I25 401 aaKnown RBP7.67□□□□□ -1.18
SMAD4-212ENST00000591126 CEP126Q9P2H0 1117 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 ABCA9Q8IUA7 1624 aa7.67□□□□□ -1.18
SMAD4-212ENST00000591126 DNAI2Q9GZS0 605 aa7.66□□□□□ -1.18
SMAD4-212ENST00000591126 DBF4Q9UBU7 674 aaPredicted RBP7.66□□□□□ -1.18
SMAD4-212ENST00000591126 NLGN1Q8N2Q7 840 aa7.66□□□□□ -1.18
SMAD4-212ENST00000591126 ZNF622Q969S3 477 aaKnown RBP eCLIP7.66□□□□□ -1.18
SMAD4-212ENST00000591126 CCNL1Q9UK58 526 aaPredicted RBP7.66□□□□□ -1.18
SMAD4-212ENST00000591126 ARHGEF12Q9NZN5 1544 aa7.66□□□□□ -1.18
SMAD4-212ENST00000591126 CLSTN1O94985 981 aa7.66□□□□□ -1.18
SMAD4-212ENST00000591126 CCDC152Q4G0S7 254 aa7.66□□□□□ -1.18
SMAD4-212ENST00000591126 VPS53Q5VIR6 699 aa7.66□□□□□ -1.18
SMAD4-212ENST00000591126 FAM135BQ49AJ0 1406 aa7.66□□□□□ -1.18
SMAD4-212ENST00000591126 ALDH1B1P30837 517 aa7.66□□□□□ -1.18
SMAD4-212ENST00000591126 CCDC27Q2M243 656 aa7.66□□□□□ -1.18
SMAD4-212ENST00000591126 TMC4Q7Z404 712 aa7.66□□□□□ -1.18
SMAD4-212ENST00000591126 KIF7Q2M1P5 1343 aa7.65□□□□□ -1.18
SMAD4-212ENST00000591126 BRMS1Q9HCU9 246 aa7.65□□□□□ -1.18
SMAD4-212ENST00000591126 CLEC11AQ9Y240 323 aa7.65□□□□□ -1.18
SMAD4-212ENST00000591126 TRIM29Q14134 588 aa7.65□□□□□ -1.18
SMAD4-212ENST00000591126 ANKRD2Q9GZV1 360 aa7.65□□□□□ -1.18
SMAD4-212ENST00000591126 KIF24Q5T7B8 1368 aa7.65□□□□□ -1.18
SMAD4-212ENST00000591126 PREX2Q70Z35 1606 aa7.65□□□□□ -1.18
SMAD4-212ENST00000591126 CC2D2BQ6DHV5 1058 aa7.65□□□□□ -1.19
SMAD4-212ENST00000591126 ADGBQ8N7X0 1667 aa7.65□□□□□ -1.19
SMAD4-212ENST00000591126 POLR3AO14802 1390 aaPredicted RBP7.64□□□□□ -1.19
SMAD4-212ENST00000591126 ANKRD18BA2A2Z9 1011 aa7.64□□□□□ -1.19
SMAD4-212ENST00000591126 APPP05067 770 aa7.64□□□□□ -1.19
SMAD4-212ENST00000591126 NBPF1Q3BBV0 1214 aa7.64□□□□□ -1.19
SMAD4-212ENST00000591126 TTC39AQ5SRH9 613 aa7.64□□□□□ -1.19
SMAD4-212ENST00000591126 ANKIB1Q9P2G1 1089 aa7.64□□□□□ -1.19
SMAD4-212ENST00000591126 PTPRMP28827 1452 aa7.64□□□□□ -1.19
SMAD4-212ENST00000591126 H0YIN7 160 aa7.64□□□□□ -1.19
SMAD4-212ENST00000591126 SLC5A1P13866 664 aa7.64□□□□□ -1.19
SMAD4-212ENST00000591126 DNAJC2Q99543 621 aaKnown RBP7.64□□□□□ -1.19
SMAD4-212ENST00000591126 IFT57Q9NWB7 429 aa7.64□□□□□ -1.19
SMAD4-212ENST00000591126 DHX16O60231 1041 aaKnown RBP7.64□□□□□ -1.19
SMAD4-212ENST00000591126 PPP2R1AP30153 589 aa7.64□□□□□ -1.19
SMAD4-212ENST00000591126 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.64□□□□□ -1.196e-8■□□□□ 8.4
SMAD4-212ENST00000591126 EDC4Q6P2E9 1401 aaKnown RBP7.64□□□□□ -1.19
SMAD4-212ENST00000591126 FKBP8Q14318 412 aa7.64□□□□□ -1.19
SMAD4-212ENST00000591126 CCDC146Q8IYE0 955 aa7.64□□□□□ -1.19
SMAD4-212ENST00000591126 PPP4R2Q9NY27 417 aa7.64□□□□□ -1.19
SMAD4-212ENST00000591126 R3HCC1Q9Y3T6 440 aaKnown RBP7.64□□□□□ -1.19
SMAD4-212ENST00000591126 SHROOM2Q13796 1616 aa7.64□□□□□ -1.19
SMAD4-212ENST00000591126 GRIN3BO60391 1043 aa7.63□□□□□ -1.19
SMAD4-212ENST00000591126 TWISTNBQ3B726 338 aaPredicted RBP7.63□□□□□ -1.19
SMAD4-212ENST00000591126 DZIP1LQ8IYY4 767 aaKnown RBP7.63□□□□□ -1.19
SMAD4-212ENST00000591126 TRMT112Q9UI30 125 aaKnown RBP7.63□□□□□ -1.19
SMAD4-212ENST00000591126 CPS1P31327 1500 aa7.63□□□□□ -1.19
SMAD4-212ENST00000591126 MAST3O60307 1309 aa7.63□□□□□ -1.19
SMAD4-212ENST00000591126 ERVV-2B6SEH9 535 aa7.63□□□□□ -1.19
SMAD4-212ENST00000591126 CCDC178Q5BJE1 867 aa7.63□□□□□ -1.19
SMAD4-212ENST00000591126 RALYLQ86SE5 291 aaKnown RBP7.63□□□□□ -1.19
SMAD4-212ENST00000591126 EHMT1Q9H9B1 1298 aa7.63□□□□□ -1.19
SMAD4-212ENST00000591126 NEUROD6Q96NK8 337 aa7.63□□□□□ -1.19
SMAD4-212ENST00000591126 PRKRIP1Q9H875 184 aaPredicted RBP7.63□□□□□ -1.19
SMAD4-212ENST00000591126 BAG3O95817 575 aa7.63□□□□□ -1.19
SMAD4-212ENST00000591126 GNAI2P04899 355 aa7.63□□□□□ -1.19
SMAD4-212ENST00000591126 CHRNA2Q15822 529 aa7.63□□□□□ -1.19
SMAD4-212ENST00000591126 BICDL1Q6ZP65 573 aa7.63□□□□□ -1.19
SMAD4-212ENST00000591126 CNKSR1Q969H4 720 aa7.63□□□□□ -1.19
SMAD4-212ENST00000591126 APAF1O14727 1248 aa7.62□□□□□ -1.19
SMAD4-212ENST00000591126 REC8O95072 547 aa7.62□□□□□ -1.19
SMAD4-212ENST00000591126 KIAA2012Q0VF49 1180 aa7.62□□□□□ -1.19
SMAD4-212ENST00000591126 IFIT5Q13325 482 aaKnown RBP7.62□□□□□ -1.19
SMAD4-212ENST00000591126 HSCBQ8IWL3 235 aa7.62□□□□□ -1.19
SMAD4-212ENST00000591126 TCERG1O14776 1098 aaKnown RBP7.62□□□□□ -1.19
SMAD4-212ENST00000591126 IKQ13123 557 aaPredicted RBP7.62□□□□□ -1.19
SMAD4-212ENST00000591126 NME9Q86XW9 330 aa7.62□□□□□ -1.19
SMAD4-212ENST00000591126 IL27Q8NEV9 243 aa7.62□□□□□ -1.19
SMAD4-212ENST00000591126 RASSF8Q8NHQ8 419 aa7.62□□□□□ -1.19
SMAD4-212ENST00000591126 ARHGEF40Q8TER5 1519 aa7.62□□□□□ -1.19
SMAD4-212ENST00000591126 ZNF710Q8N1W2 664 aa7.62□□□□□ -1.19
SMAD4-212ENST00000591126 SBNO1A3KN83 1393 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms