RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 C19orf44Q9H6X5 657 aa14.36□□□□□ -0.11
LIG3-204ENST00000585740 NOB1Q9ULX3 412 aaKnown RBP14.36□□□□□ -0.11
LIG3-204ENST00000585740 KIAA0232Q92628 1395 aa14.35□□□□□ -0.11
LIG3-204ENST00000585740 TRPM3Q9HCF6 1732 aaPredicted RBP14.35□□□□□ -0.11
LIG3-204ENST00000585740 NUTM2BA6NNL0 878 aaPredicted RBP14.35□□□□□ -0.11
LIG3-204ENST00000585740 NUTM2EB1AL46 878 aaPredicted RBP14.35□□□□□ -0.11
LIG3-204ENST00000585740 TRIM27P14373 513 aa14.35□□□□□ -0.11
LIG3-204ENST00000585740 PDE4AP27815 886 aa14.35□□□□□ -0.11
LIG3-204ENST00000585740 NUTM2AQ8IVF1 878 aaPredicted RBP14.35□□□□□ -0.11
LIG3-204ENST00000585740 RTF1Q92541 710 aaKnown RBP14.35□□□□□ -0.11
LIG3-204ENST00000585740 IP6K1Q92551 441 aa14.35□□□□□ -0.11
LIG3-204ENST00000585740 EYA1Q99502 592 aa14.35□□□□□ -0.11
LIG3-204ENST00000585740 THUMPD2Q9BTF0 503 aaKnown RBP14.35□□□□□ -0.11
LIG3-204ENST00000585740 BACH2Q9BYV9 841 aa14.35□□□□□ -0.11
LIG3-204ENST00000585740 SLIT3O75094 1523 aa14.35□□□□□ -0.11
LIG3-204ENST00000585740 MST1RQ04912 1400 aa14.34□□□□□ -0.11
LIG3-204ENST00000585740 C1orf167Q5SNV9 1468 aa14.34□□□□□ -0.11
LIG3-204ENST00000585740 TWISTNBQ3B726 338 aaPredicted RBP14.34□□□□□ -0.11
LIG3-204ENST00000585740 MRPL50Q8N5N7 158 aaKnown RBP14.34□□□□□ -0.11
LIG3-204ENST00000585740 CHL1O00533 1208 aa14.33□□□□□ -0.12
LIG3-204ENST00000585740 ANP32AP39687 249 aaKnown RBP14.33□□□□□ -0.12
LIG3-204ENST00000585740 TNNQ9UQP3 1299 aa14.33□□□□□ -0.12
LIG3-204ENST00000585740 FAM83GA6ND36 823 aa14.32□□□□□ -0.12
LIG3-204ENST00000585740 IGHDP01880 384 aa14.32□□□□□ -0.12
LIG3-204ENST00000585740 NUTM2GQ5VZR2 741 aa14.32□□□□□ -0.12
LIG3-204ENST00000585740 API5Q9BZZ5 524 aaKnown RBP14.32□□□□□ -0.12
LIG3-204ENST00000585740 LRRC37A3O60309 1634 aa14.32□□□□□ -0.12
LIG3-204ENST00000585740 AFF2P51816 1311 aa14.32□□□□□ -0.12
LIG3-204ENST00000585740 CRB1P82279 1406 aa14.32□□□□□ -0.12
LIG3-204ENST00000585740 VIRMAQ69YN4 1812 aaKnown RBP14.31□□□□□ -0.12
LIG3-204ENST00000585740 ATF3P18847 181 aa14.31□□□□□ -0.12
LIG3-204ENST00000585740 MTHFSDQ2M296 383 aaKnown RBP14.31□□□□□ -0.12
LIG3-204ENST00000585740 CADPS2Q86UW7 1296 aa14.31□□□□□ -0.12
LIG3-204ENST00000585740 ITPRIPQ8IWB1 547 aa14.31□□□□□ -0.12
LIG3-204ENST00000585740 BABAM1Q9NWV8 329 aa14.31□□□□□ -0.12
LIG3-204ENST00000585740 CACNA1FO60840 1977 aa14.31□□□□□ -0.12
LIG3-204ENST00000585740 AHDC1Q5TGY3 1603 aaPredicted RBP14.3□□□□□ -0.12
LIG3-204ENST00000585740 DCTN1Q14203 1278 aa14.3□□□□□ -0.12
LIG3-204ENST00000585740 FAM161AQ3B820 660 aa14.3□□□□□ -0.12
LIG3-204ENST00000585740 TMEM57Q8N5G2 664 aa14.3□□□□□ -0.12
LIG3-204ENST00000585740 PCDHB15Q9Y5E8 787 aa14.3□□□□□ -0.12
LIG3-204ENST00000585740 USP19O94966 1318 aa14.3□□□□□ -0.12
LIG3-204ENST00000585740 SOS1Q07889 1333 aaPredicted RBP14.3□□□□□ -0.12
LIG3-204ENST00000585740 ALS2Q96Q42 1657 aa14.3□□□□□ -0.12
LIG3-204ENST00000585740 HDAC1Q13547 482 aaPredicted RBP14.29□□□□□ -0.12
LIG3-204ENST00000585740 MCM10Q7L590 875 aa14.29□□□□□ -0.12
LIG3-204ENST00000585740 KRT28Q7Z3Y7 464 aa14.29□□□□□ -0.12
LIG3-204ENST00000585740 TSPYL6Q8N831 410 aa14.29□□□□□ -0.12
LIG3-204ENST00000585740 C8orf58Q8NAV2 365 aa14.29□□□□□ -0.12
LIG3-204ENST00000585740 ORAI2Q96SN7 254 aa14.29□□□□□ -0.12
LIG3-204ENST00000585740 GNAT3A8MTJ3 354 aa14.28□□□□□ -0.12
LIG3-204ENST00000585740 RGS12O14924 1447 aa14.28□□□□□ -0.12
LIG3-204ENST00000585740 ABCC4O15439 1325 aa14.28□□□□□ -0.12
LIG3-204ENST00000585740 BRINP3Q76B58 766 aa14.28□□□□□ -0.12
LIG3-204ENST00000585740 MAP3K5Q99683 1374 aa14.28□□□□□ -0.12
LIG3-204ENST00000585740 FOXO3O43524 673 aa14.27□□□□□ -0.13
LIG3-204ENST00000585740 ZBTB40Q9NUA8 1239 aa14.27□□□□□ -0.13
LIG3-204ENST00000585740 CAMTA1Q9Y6Y1 1673 aa14.26□□□□□ -0.13
LIG3-204ENST00000585740 GCP02774 474 aa14.26□□□□□ -0.13
LIG3-204ENST00000585740 RGS3P49796 1198 aa14.26□□□□□ -0.13
LIG3-204ENST00000585740 RBM6P78332 1123 aaKnown RBP14.26□□□□□ -0.13
LIG3-204ENST00000585740 ARHGEF25Q86VW2 580 aa14.26□□□□□ -0.13
LIG3-204ENST00000585740 LTV1Q96GA3 475 aaPredicted RBP14.26□□□□□ -0.13
LIG3-204ENST00000585740 C8orf37Q96NL8 207 aa14.26□□□□□ -0.13
LIG3-204ENST00000585740 QTRT2Q9H974 415 aaKnown RBP14.26□□□□□ -0.13
LIG3-204ENST00000585740 TSPYL4Q9UJ04 414 aa14.26□□□□□ -0.13
LIG3-204ENST00000585740 NCAPD2Q15021 1401 aa14.25□□□□□ -0.13
LIG3-204ENST00000585740 PTPRCP08575 1304 aa14.25□□□□□ -0.13
LIG3-204ENST00000585740 ERICH6Q7L0X2 663 aa14.25□□□□□ -0.13
LIG3-204ENST00000585740 ABCC6O95255 1503 aa14.25□□□□□ -0.13
LIG3-204ENST00000585740 RGPD2P0DJD1 1756 aa14.24□□□□□ -0.13
LIG3-204ENST00000585740 LMO7Q8WWI1 1683 aa14.24□□□□□ -0.13
LIG3-204ENST00000585740 ELL2O00472 640 aaPredicted RBP14.24□□□□□ -0.13
LIG3-204ENST00000585740 CHMP4AQ9BY43 222 aa14.24□□□□□ -0.13
LIG3-204ENST00000585740 NPHP3Q7Z494 1330 aa14.23□□□□□ -0.13
LIG3-204ENST00000585740 AMOTQ4VCS5 1084 aa14.23□□□□□ -0.13
LIG3-204ENST00000585740 PLEKHO1Q53GL0 409 aaPredicted RBP14.23□□□□□ -0.13
LIG3-204ENST00000585740 IPO9Q96P70 1041 aaKnown RBP14.23□□□□□ -0.13
LIG3-204ENST00000585740 PDZRN3Q9UPQ7 1066 aa14.23□□□□□ -0.13
LIG3-204ENST00000585740 FAM208AQ9UK61 1670 aaKnown RBP14.22□□□□□ -0.13
LIG3-204ENST00000585740 OVOS2A0A0G2JMS6 1433 aa14.22□□□□□ -0.13
LIG3-204ENST00000585740 ZBTB7BO15156 539 aaPredicted RBP14.21□□□□□ -0.13
LIG3-204ENST00000585740 TAF7Q15545 349 aaPredicted RBP14.21□□□□□ -0.13
LIG3-204ENST00000585740 C8orf34Q49A92 452 aa14.21□□□□□ -0.13
LIG3-204ENST00000585740 NBPF6Q5VWK0 638 aa14.21□□□□□ -0.13
LIG3-204ENST00000585740 INTS3Q68E01 1043 aaKnown RBP14.21□□□□□ -0.13
LIG3-204ENST00000585740 LMOD2Q6P5Q4 547 aa14.21□□□□□ -0.13
LIG3-204ENST00000585740 SKAP1Q86WV1 359 aa14.21□□□□□ -0.13
LIG3-204ENST00000585740 SMC5Q8IY18 1101 aa14.21□□□□□ -0.13
LIG3-204ENST00000585740 LRRC59Q96AG4 307 aaKnown RBP14.21□□□□□ -0.13
LIG3-204ENST00000585740 DDRGK1Q96HY6 314 aa14.21□□□□□ -0.13
LIG3-204ENST00000585740 NBPF4Q96M43 638 aa14.21□□□□□ -0.13
LIG3-204ENST00000585740 PLEKHG2Q9H7P9 1386 aa14.21□□□□□ -0.14
LIG3-204ENST00000585740 ZBTB7CA1YPR0 619 aa14.2□□□□□ -0.14
LIG3-204ENST00000585740 MSH5O43196 834 aa14.2□□□□□ -0.14
LIG3-204ENST00000585740 XPCQ01831 940 aaPredicted RBP14.2□□□□□ -0.14
LIG3-204ENST00000585740 ANKRD24Q8TF21 1146 aa14.2□□□□□ -0.14
LIG3-204ENST00000585740 TNS3Q68CZ2 1445 aa14.2□□□□□ -0.14
LIG3-204ENST00000585740 RGPD5Q99666 1765 aa14.19□□□□□ -0.14
LIG3-204ENST00000585740 AKAP4Q5JQC9 854 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms