RNA–Protein interactions for RNA: ENST00000584655.5

RFFL-212, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 2 BASIC

Gene RFFL, Length 4,039 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-212ENST00000584655 FAM182BQ5T319 152 aa12.9□□□□□ -0.35
RFFL-212ENST00000584655 TMEM94Q12767 1356 aa12.89□□□□□ -0.35
RFFL-212ENST00000584655 KIF13AQ9H1H9 1805 aa12.89□□□□□ -0.35
RFFL-212ENST00000584655 ZFYVE9O95405 1425 aa12.89□□□□□ -0.35
RFFL-212ENST00000584655 EDC4Q6P2E9 1401 aaKnown RBP12.89□□□□□ -0.35
RFFL-212ENST00000584655 CHPF2Q9P2E5 772 aa12.89□□□□□ -0.35
RFFL-212ENST00000584655 NRXN1Q9ULB1 1477 aa12.89□□□□□ -0.35
RFFL-212ENST00000584655 GZF1Q9H116 711 aaPredicted RBP12.89□□□□□ -0.35
RFFL-212ENST00000584655 NPC1L1Q9UHC9 1359 aa12.89□□□□□ -0.35
RFFL-212ENST00000584655 PLEKHG1Q9ULL1 1385 aa12.88□□□□□ -0.35
RFFL-212ENST00000584655 ATP5J2-PTCD1G3V325 749 aa12.88□□□□□ -0.35
RFFL-212ENST00000584655 CALD1Q05682 793 aaKnown RBP12.88□□□□□ -0.35
RFFL-212ENST00000584655 MRPL50Q8N5N7 158 aaKnown RBP12.88□□□□□ -0.35
RFFL-212ENST00000584655 C19orf44Q9H6X5 657 aa12.88□□□□□ -0.35
RFFL-212ENST00000584655 KCNQ4P56696 695 aa12.88□□□□□ -0.35
RFFL-212ENST00000584655 PPLO60437 1756 aa12.88□□□□□ -0.35
RFFL-212ENST00000584655 NLRP1Q9C000 1473 aa12.87□□□□□ -0.35
RFFL-212ENST00000584655 RBM42Q9BTD8 480 aaKnown RBP12.87□□□□□ -0.35
RFFL-212ENST00000584655 TAF7Q15545 349 aaPredicted RBP12.87□□□□□ -0.35
RFFL-212ENST00000584655 LARP6Q9BRS8 491 aaKnown RBP12.87□□□□□ -0.35
RFFL-212ENST00000584655 KIF16BQ96L93 1317 aa12.87□□□□□ -0.35
RFFL-212ENST00000584655 PROSER3Q2NL68 480 aa12.86□□□□□ -0.35
RFFL-212ENST00000584655 CWF19L2Q2TBE0 894 aaKnown RBP12.86□□□□□ -0.35
RFFL-212ENST00000584655 GAS2L2Q8NHY3 880 aa12.86□□□□□ -0.35
RFFL-212ENST00000584655 USP6P35125 1406 aa12.86□□□□□ -0.35
RFFL-212ENST00000584655 PI4KAP2A4QPH2 592 aa12.86□□□□□ -0.35
RFFL-212ENST00000584655 NUTM1Q86Y26 1132 aa12.86□□□□□ -0.35
RFFL-212ENST00000584655 PI4KAP1Q8N8J0 262 aa12.86□□□□□ -0.35
RFFL-212ENST00000584655 KLHDC4Q8TBB5 520 aa12.86□□□□□ -0.35
RFFL-212ENST00000584655 IFT57Q9NWB7 429 aa12.86□□□□□ -0.35
RFFL-212ENST00000584655 NSD2O96028 1365 aa12.85□□□□□ -0.35
RFFL-212ENST00000584655 C8orf34Q49A92 452 aa12.85□□□□□ -0.35
RFFL-212ENST00000584655 LRRFIP2Q9Y608 721 aaKnown RBP12.85□□□□□ -0.35
RFFL-212ENST00000584655 FLIIQ13045 1269 aa12.85□□□□□ -0.35
RFFL-212ENST00000584655 C9orf78Q9NZ63 289 aaPredicted RBP12.85□□□□□ -0.35
RFFL-212ENST00000584655 ACSBG1Q96GR2 724 aa12.84□□□□□ -0.35
RFFL-212ENST00000584655 SMIM5Q71RC9 77 aa12.84□□□□□ -0.35
RFFL-212ENST00000584655 FLT4P35916 1363 aa12.83□□□□□ -0.36
RFFL-212ENST00000584655 MYOM1P52179 1685 aa12.83□□□□□ -0.36
RFFL-212ENST00000584655 KDM2BQ8NHM5 1336 aa12.83□□□□□ -0.36
RFFL-212ENST00000584655 SURF6O75683 361 aaKnown RBP12.83□□□□□ -0.36
RFFL-212ENST00000584655 PA2G4Q9UQ80 394 aaKnown RBP12.83□□□□□ -0.36
RFFL-212ENST00000584655 ATP7BP35670 1465 aa12.82□□□□□ -0.36
RFFL-212ENST00000584655 EIF5BO60841 1220 aaKnown RBP12.82□□□□□ -0.36
RFFL-212ENST00000584655 PLEKHO1Q53GL0 409 aaPredicted RBP12.82□□□□□ -0.36
RFFL-212ENST00000584655 RIC3Q7Z5B4 369 aa12.82□□□□□ -0.36
RFFL-212ENST00000584655 TTC5Q8N0Z6 440 aa12.82□□□□□ -0.36
RFFL-212ENST00000584655 NDUFB9Q9Y6M9 179 aa12.82□□□□□ -0.36
RFFL-212ENST00000584655 MYO3AQ8NEV4 1616 aa12.82□□□□□ -0.36
RFFL-212ENST00000584655 API5Q9BZZ5 524 aaKnown RBP12.82□□□□□ -0.36
RFFL-212ENST00000584655 ZBTB3Q9H5J0 574 aa12.82□□□□□ -0.36
RFFL-212ENST00000584655 ZBTB40Q9NUA8 1239 aa12.82□□□□□ -0.36
RFFL-212ENST00000584655 CCDC27Q2M243 656 aa12.81□□□□□ -0.36
RFFL-212ENST00000584655 CHD1LQ86WJ1 897 aa12.81□□□□□ -0.36
RFFL-212ENST00000584655 PUS7Q96PZ0 661 aaKnown RBP12.81□□□□□ -0.36
RFFL-212ENST00000584655 ARHGEF28Q8N1W1 1705 aaKnown RBP12.81□□□□□ -0.36
RFFL-212ENST00000584655 MS4A1P11836 297 aa12.81□□□□□ -0.36
RFFL-212ENST00000584655 SIRT2Q8IXJ6 389 aa12.81□□□□□ -0.36
RFFL-212ENST00000584655 IP6K1Q92551 441 aa12.81□□□□□ -0.36
RFFL-212ENST00000584655 NINLQ9Y2I6 1382 aa12.81□□□□□ -0.36
RFFL-212ENST00000584655 ZBTB7BO15156 539 aaPredicted RBP12.8□□□□□ -0.36
RFFL-212ENST00000584655 TATP17735 454 aaPredicted RBP12.8□□□□□ -0.36
RFFL-212ENST00000584655 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.8□□□□□ -0.36
RFFL-212ENST00000584655 SLAIN2Q9P270 581 aa12.8□□□□□ -0.36
RFFL-212ENST00000584655 POLR1AO95602 1720 aaPredicted RBP12.8□□□□□ -0.36
RFFL-212ENST00000584655 USP19O94966 1318 aa12.8□□□□□ -0.36
RFFL-212ENST00000584655 PNMA6EA0A0J9YXQ4 647 aa12.8□□□□□ -0.36
RFFL-212ENST00000584655 CHL1O00533 1208 aa12.8□□□□□ -0.36
RFFL-212ENST00000584655 ZC3H13Q5T200 1668 aaKnown RBP12.8□□□□□ -0.36
RFFL-212ENST00000584655 SRGAP3O43295 1099 aa12.79□□□□□ -0.36
RFFL-212ENST00000584655 NBPF7P0C2Y1 421 aaPredicted RBP12.79□□□□□ -0.36
RFFL-212ENST00000584655 UBTFL1P0CB47 393 aaPredicted RBP12.79□□□□□ -0.36
RFFL-212ENST00000584655 CABP4P57796 275 aa12.79□□□□□ -0.36
RFFL-212ENST00000584655 CCDC30Q5VVM6 783 aa12.79□□□□□ -0.36
RFFL-212ENST00000584655 LARP1Q6PKG0 1096 aaKnown RBP12.79□□□□□ -0.36
RFFL-212ENST00000584655 CPSF1Q10570 1443 aaKnown RBP12.79□□□□□ -0.36
RFFL-212ENST00000584655 PHF23Q9BUL5 403 aaPredicted RBP12.79□□□□□ -0.36
RFFL-212ENST00000584655 USP16Q9Y5T5 823 aa12.78□□□□□ -0.36
RFFL-212ENST00000584655 NPHP4O75161 1426 aaPredicted RBP12.78□□□□□ -0.36
RFFL-212ENST00000584655 PPFIA3O75145 1194 aa12.78□□□□□ -0.36
RFFL-212ENST00000584655 CADPS2Q86UW7 1296 aa12.78□□□□□ -0.36
RFFL-212ENST00000584655 BTG4Q9NY30 223 aa12.78□□□□□ -0.36
RFFL-212ENST00000584655 TTC21AQ8NDW8 1320 aa12.78□□□□□ -0.36
RFFL-212ENST00000584655 FRAT2O75474 233 aaPredicted RBP12.78□□□□□ -0.36
RFFL-212ENST00000584655 GPTP24298 496 aa12.78□□□□□ -0.36
RFFL-212ENST00000584655 KCNH5Q8NCM2 988 aa12.78□□□□□ -0.36
RFFL-212ENST00000584655 KIAA0232Q92628 1395 aa12.78□□□□□ -0.36
RFFL-212ENST00000584655 LRRC7Q96NW7 1537 aa12.78□□□□□ -0.36
RFFL-212ENST00000584655 MAP3K2Q9Y2U5 619 aa12.78□□□□□ -0.36
RFFL-212ENST00000584655 MSH6P52701 1360 aa12.77□□□□□ -0.36
RFFL-212ENST00000584655 SETBP1Q9Y6X0 1596 aa12.77□□□□□ -0.37
RFFL-212ENST00000584655 A1BGP04217 495 aa12.76□□□□□ -0.37
RFFL-212ENST00000584655 SPATA31D1Q6ZQQ2 1576 aa12.76□□□□□ -0.37
RFFL-212ENST00000584655 RIMS1Q86UR5 1692 aaKnown RBP12.76□□□□□ -0.37
RFFL-212ENST00000584655 ZNF496Q96IT1 587 aaPredicted RBP12.76□□□□□ -0.37
RFFL-212ENST00000584655 CCDC24Q8N4L8 307 aa12.76□□□□□ -0.37
RFFL-212ENST00000584655 MYD88Q99836 296 aa12.76□□□□□ -0.37
RFFL-212ENST00000584655 C22orf23Q9BZE7 217 aa12.76□□□□□ -0.37
RFFL-212ENST00000584655 SBNO1A3KN83 1393 aa12.76□□□□□ -0.37
RFFL-212ENST00000584655 BRINP3Q76B58 766 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms