RNA–Protein interactions for RNA: ENST00000583927.1

SKA2-208, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 2

Gene SKA2, Length 533 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-208ENST00000583927 NBPF4Q96M43 638 aa13.6□□□□□ -0.23
SKA2-208ENST00000583927 EMILIN1Q9Y6C2 1016 aa13.6□□□□□ -0.23
SKA2-208ENST00000583927 DOT1LQ8TEK3 1739 aa13.59□□□□□ -0.23
SKA2-208ENST00000583927 POLKQ9UBT6 870 aa13.59□□□□□ -0.23
SKA2-208ENST00000583927 KNSTRNQ9Y448 316 aa13.58□□□□□ -0.24
SKA2-208ENST00000583927 LY75O60449 1722 aa13.58□□□□□ -0.24
SKA2-208ENST00000583927 ITGB4P16144 1822 aa13.57□□□□□ -0.24
SKA2-208ENST00000583927 PER1O15534 1290 aaPredicted RBP13.57□□□□□ -0.24
SKA2-208ENST00000583927 AMER1Q5JTC6 1135 aaPredicted RBP13.57□□□□□ -0.24
SKA2-208ENST00000583927 ZCRB1Q8TBF4 217 aaKnown RBP13.57□□□□□ -0.24
SKA2-208ENST00000583927 RAPGEF4Q8WZA2 1011 aa13.56□□□□□ -0.24
SKA2-208ENST00000583927 NPC1L1Q9UHC9 1359 aa13.56□□□□□ -0.24
SKA2-208ENST00000583927 QSER1Q2KHR3 1735 aa13.56□□□□□ -0.24
SKA2-208ENST00000583927 TATP17735 454 aaPredicted RBP13.55□□□□□ -0.24
SKA2-208ENST00000583927 NBPF14Q5TI25 921 aa13.55□□□□□ -0.24
SKA2-208ENST00000583927 PTF1AQ7RTS3 328 aa13.55□□□□□ -0.24
SKA2-208ENST00000583927 PAPPAQ13219 1627 aa13.54□□□□□ -0.24
SKA2-208ENST00000583927 CASZ1Q86V15 1759 aa13.54□□□□□ -0.24
SKA2-208ENST00000583927 KCNQ2O43526 872 aa13.54□□□□□ -0.24
SKA2-208ENST00000583927 PROM2Q8N271 834 aa13.54□□□□□ -0.24
SKA2-208ENST00000583927 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.54□□□□□ -0.24
SKA2-208ENST00000583927 PPM1GO15355 546 aaPredicted RBP13.53□□□□□ -0.24
SKA2-208ENST00000583927 MORC1Q86VD1 984 aa13.53□□□□□ -0.24
SKA2-208ENST00000583927 DDX54Q8TDD1 881 aaKnown RBP13.53□□□□□ -0.24
SKA2-208ENST00000583927 PCDH11XQ9BZA7 1347 aa13.53□□□□□ -0.24
SKA2-208ENST00000583927 PCDH11YQ9BZA8 1340 aa13.53□□□□□ -0.24
SKA2-208ENST00000583927 TOGARAM1Q9Y4F4 1720 aa13.53□□□□□ -0.24
SKA2-208ENST00000583927 EIF4A2Q14240 407 aaKnown RBP13.52□□□□□ -0.25
SKA2-208ENST00000583927 R3HDM1Q15032 1099 aaKnown RBP13.52□□□□□ -0.25
SKA2-208ENST00000583927 USHBP1Q8N6Y0 703 aa13.52□□□□□ -0.25
SKA2-208ENST00000583927 EYA1Q99502 592 aa13.52□□□□□ -0.25
SKA2-208ENST00000583927 TAF1LQ8IZX4 1826 aa13.51□□□□□ -0.25
SKA2-208ENST00000583927 IGSF1Q8N6C5 1336 aa13.51□□□□□ -0.25
SKA2-208ENST00000583927 PSDA5PKW4 1024 aaPredicted RBP13.51□□□□□ -0.25
SKA2-208ENST00000583927 TXNRD1Q16881 649 aa13.51□□□□□ -0.25
SKA2-208ENST00000583927 ACSBG1Q96GR2 724 aa13.51□□□□□ -0.25
SKA2-208ENST00000583927 VIRMAQ69YN4 1812 aaKnown RBP13.5□□□□□ -0.25
SKA2-208ENST00000583927 TNNT2P45379 298 aaPredicted RBP13.5□□□□□ -0.25
SKA2-208ENST00000583927 CYP27B1O15528 508 aa13.49□□□□□ -0.25
SKA2-208ENST00000583927 NKX1-1Q15270 411 aaPredicted RBP13.49□□□□□ -0.25
SKA2-208ENST00000583927 TUBGCP6Q96RT7 1819 aa13.48□□□□□ -0.25
SKA2-208ENST00000583927 KDRP35968 1356 aa13.48□□□□□ -0.25
SKA2-208ENST00000583927 SLC27A3Q5K4L6 730 aa13.48□□□□□ -0.25
SKA2-208ENST00000583927 SPG7Q9UQ90 795 aa13.48□□□□□ -0.25
SKA2-208ENST00000583927 PRIM1P49642 420 aaKnown RBP13.47□□□□□ -0.25
SKA2-208ENST00000583927 ANO8Q9HCE9 1232 aaPredicted RBP13.47□□□□□ -0.25
SKA2-208ENST00000583927 COL24A1Q17RW2 1714 aa13.47□□□□□ -0.25
SKA2-208ENST00000583927 SCN11AQ9UI33 1791 aa13.46□□□□□ -0.25
SKA2-208ENST00000583927 HMGB2P26583 209 aaKnown RBP13.46□□□□□ -0.25
SKA2-208ENST00000583927 C5P01031 1676 aa13.46□□□□□ -0.26
SKA2-208ENST00000583927 ZNF831Q5JPB2 1677 aa13.46□□□□□ -0.26
SKA2-208ENST00000583927 SLC15A2Q16348 729 aa13.45□□□□□ -0.26
SKA2-208ENST00000583927 IL13P35225 146 aa13.44□□□□□ -0.26
SKA2-208ENST00000583927 IFNL2Q8IZJ0 200 aa13.44□□□□□ -0.26
SKA2-208ENST00000583927 LRRC4BQ9NT99 713 aa13.44□□□□□ -0.26
SKA2-208ENST00000583927 STK32BQ9NY57 414 aa13.44□□□□□ -0.26
SKA2-208ENST00000583927 PHKG2P15735 406 aa13.43□□□□□ -0.26
SKA2-208ENST00000583927 MTHFSP49914 203 aa13.43□□□□□ -0.26
SKA2-208ENST00000583927 AMOTQ4VCS5 1084 aa13.43□□□□□ -0.26
SKA2-208ENST00000583927 SYTL4Q96C24 671 aaPredicted RBP13.43□□□□□ -0.26
SKA2-208ENST00000583927 COL3A1P02461 1466 aaPredicted RBP13.42□□□□□ -0.26
SKA2-208ENST00000583927 HSP90AB1P08238 724 aaKnown RBP13.41□□□□□ -0.26
SKA2-208ENST00000583927 PLEKHO1Q53GL0 409 aaPredicted RBP13.41□□□□□ -0.26
SKA2-208ENST00000583927 CC2D1BQ5T0F9 858 aaKnown RBP13.41□□□□□ -0.26
SKA2-208ENST00000583927 SMARCC1Q92922 1105 aaPredicted RBP13.41□□□□□ -0.26
SKA2-208ENST00000583927 AKT1S1Q96B36 256 aa13.41□□□□□ -0.26
SKA2-208ENST00000583927 SPON1Q9HCB6 807 aa13.41□□□□□ -0.26
SKA2-208ENST00000583927 ADAMTS7Q9UKP4 1686 aa13.4□□□□□ -0.26
SKA2-208ENST00000583927 UBR3Q6ZT12 1888 aa13.4□□□□□ -0.26
SKA2-208ENST00000583927 ERVV-2B6SEH9 535 aa13.39□□□□□ -0.27
SKA2-208ENST00000583927 SULT6B1Q6IMI4 303 aa13.39□□□□□ -0.27
SKA2-208ENST00000583927 DCAF5Q96JK2 942 aa13.39□□□□□ -0.27
SKA2-208ENST00000583927 C4BP0C0L5 1744 aa13.39□□□□□ -0.27
SKA2-208ENST00000583927 CICQ96RK0 1608 aaPredicted RBP13.39□□□□□ -0.27
SKA2-208ENST00000583927 PALLDQ8WX93 1383 aa13.38□□□□□ -0.27
SKA2-208ENST00000583927 DIAPH1O60610 1272 aaKnown RBP13.38□□□□□ -0.27
SKA2-208ENST00000583927 ZNF827Q17R98 1081 aa13.38□□□□□ -0.27
SKA2-208ENST00000583927 MPRIPQ6WCQ1 1025 aa13.38□□□□□ -0.27
SKA2-208ENST00000583927 AEBP1Q8IUX7 1158 aa13.38□□□□□ -0.27
SKA2-208ENST00000583927 SLC16A10Q8TF71 515 aa13.38□□□□□ -0.27
SKA2-208ENST00000583927 PIGBQ92521 554 aa13.38□□□□□ -0.27
SKA2-208ENST00000583927 CCNL1Q9UK58 526 aaPredicted RBP13.38□□□□□ -0.27
SKA2-208ENST00000583927 COL5A3P25940 1745 aaPredicted RBP13.37□□□□□ -0.27
SKA2-208ENST00000583927 MTFR1LQ9H019 292 aa13.37□□□□□ -0.27
SKA2-208ENST00000583927 TMOD3Q9NYL9 352 aa13.37□□□□□ -0.27
SKA2-208ENST00000583927 KDM6AO15550 1401 aaPredicted RBP13.37□□□□□ -0.27
SKA2-208ENST00000583927 ZNF530Q6P9A1 599 aaPredicted RBP13.36□□□□□ -0.27
SKA2-208ENST00000583927 PDGFDQ9GZP0 370 aaPredicted RBP13.36□□□□□ -0.27
SKA2-208ENST00000583927 UTRNP46939 3433 aa13.35□□□□□ -0.27
SKA2-208ENST00000583927 PTGER2P43116 358 aa13.35□□□□□ -0.27
SKA2-208ENST00000583927 SGIP1Q9BQI5 828 aa13.35□□□□□ -0.27
SKA2-208ENST00000583927 MRC1P22897 1456 aa13.35□□□□□ -0.27
SKA2-208ENST00000583927 SIPA1L3O60292 1781 aaPredicted RBP13.35□□□□□ -0.27
SKA2-208ENST00000583927 AKAP4Q5JQC9 854 aa13.34□□□□□ -0.27
SKA2-208ENST00000583927 C1orf141Q5JVX7 400 aa13.34□□□□□ -0.27
SKA2-208ENST00000583927 MYH14Q7Z406 1995 aaKnown RBP13.34□□□□□ -0.27
SKA2-208ENST00000583927 PNPLA7Q6ZV29 1317 aa13.34□□□□□ -0.27
SKA2-208ENST00000583927 CFAP53Q96M91 514 aa13.33□□□□□ -0.28
SKA2-208ENST00000583927 TFCP2L1Q9NZI6 479 aa13.33□□□□□ -0.28
SKA2-208ENST00000583927 GOLGB1Q14789 3259 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms