RNA–Protein interactions for RNA: ENST00000579358.1

MKS1-208, Transcript of Meckel syndrome, type 1, humanhuman

TSL 4

Gene MKS1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-208ENST00000579358 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.53□□□□□ -0.24
MKS1-208ENST00000579358 PCDH11XQ9BZA7 1347 aa13.53□□□□□ -0.24
MKS1-208ENST00000579358 PCDH11YQ9BZA8 1340 aa13.53□□□□□ -0.24
MKS1-208ENST00000579358 KDRP35968 1356 aa13.53□□□□□ -0.24
MKS1-208ENST00000579358 RGPD2P0DJD1 1756 aa13.53□□□□□ -0.24
MKS1-208ENST00000579358 TRIM37O94972 964 aa13.52□□□□□ -0.25
MKS1-208ENST00000579358 RGPD1P0DJD0 1748 aa13.52□□□□□ -0.25
MKS1-208ENST00000579358 BAG6P46379 1132 aa13.51□□□□□ -0.25
MKS1-208ENST00000579358 DDX54Q8TDD1 881 aaKnown RBP13.51□□□□□ -0.25
MKS1-208ENST00000579358 SPG7Q9UQ90 795 aa13.51□□□□□ -0.25
MKS1-208ENST00000579358 EP400Q96L91 3159 aa13.51□□□□□ -0.25
MKS1-208ENST00000579358 SULT6B1Q6IMI4 303 aa13.5□□□□□ -0.25
MKS1-208ENST00000579358 BCL11BQ9C0K0 894 aaPredicted RBP13.5□□□□□ -0.25
MKS1-208ENST00000579358 AEBP1Q8IUX7 1158 aa13.49□□□□□ -0.25
MKS1-208ENST00000579358 PKD1L3Q7Z443 1732 aa13.49□□□□□ -0.25
MKS1-208ENST00000579358 SHANK3Q9BYB0 1731 aa13.48□□□□□ -0.25
MKS1-208ENST00000579358 TNS1Q9HBL0 1735 aaKnown RBP13.48□□□□□ -0.25
MKS1-208ENST00000579358 CYP27B1O15528 508 aa13.48□□□□□ -0.25
MKS1-208ENST00000579358 AMOTQ4VCS5 1084 aa13.48□□□□□ -0.25
MKS1-208ENST00000579358 DEFB132Q7Z7B7 95 aa13.48□□□□□ -0.25
MKS1-208ENST00000579358 NUDCQ9Y266 331 aa13.48□□□□□ -0.25
MKS1-208ENST00000579358 MYBBP1AQ9BQG0 1328 aaKnown RBP13.47□□□□□ -0.25
MKS1-208ENST00000579358 APBA3O96018 575 aa13.47□□□□□ -0.25
MKS1-208ENST00000579358 PLEKHO1Q53GL0 409 aaPredicted RBP13.47□□□□□ -0.25
MKS1-208ENST00000579358 PLSCR1O15162 318 aa13.46□□□□□ -0.25
MKS1-208ENST00000579358 NKX1-1Q15270 411 aaPredicted RBP13.46□□□□□ -0.25
MKS1-208ENST00000579358 IFNL2Q8IZJ0 200 aa13.46□□□□□ -0.25
MKS1-208ENST00000579358 PRKRIP1Q9H875 184 aaPredicted RBP13.46□□□□□ -0.25
MKS1-208ENST00000579358 NHSQ6T4R5 1651 aa13.46□□□□□ -0.26
MKS1-208ENST00000579358 U2SURPO15042 1029 aaKnown RBP13.45□□□□□ -0.26
MKS1-208ENST00000579358 KCNQ2O43526 872 aa13.45□□□□□ -0.26
MKS1-208ENST00000579358 HMOX1P09601 288 aa13.45□□□□□ -0.26
MKS1-208ENST00000579358 PHKG2P15735 406 aa13.45□□□□□ -0.26
MKS1-208ENST00000579358 ACSBG1Q96GR2 724 aa13.45□□□□□ -0.26
MKS1-208ENST00000579358 CAMKK2Q96RR4 588 aa13.45□□□□□ -0.26
MKS1-208ENST00000579358 EN1Q05925 392 aaPredicted RBP13.44□□□□□ -0.26
MKS1-208ENST00000579358 PTF1AQ7RTS3 328 aa13.44□□□□□ -0.26
MKS1-208ENST00000579358 HSP90AB1P08238 724 aaKnown RBP13.43□□□□□ -0.26
MKS1-208ENST00000579358 ZNF530Q6P9A1 599 aaPredicted RBP13.43□□□□□ -0.26
MKS1-208ENST00000579358 SBF2Q86WG5 1849 aa13.42□□□□□ -0.26
MKS1-208ENST00000579358 PRIM1P49642 420 aaKnown RBP13.42□□□□□ -0.26
MKS1-208ENST00000579358 EZH2Q15910 746 aaKnown RBP13.42□□□□□ -0.26
MKS1-208ENST00000579358 C1orf141Q5JVX7 400 aa13.42□□□□□ -0.26
MKS1-208ENST00000579358 RSPH6AQ9H0K4 717 aa13.42□□□□□ -0.26
MKS1-208ENST00000579358 RGPD3A6NKT7 1758 aaPredicted RBP13.42□□□□□ -0.26
MKS1-208ENST00000579358 RGPD4Q7Z3J3 1758 aa13.42□□□□□ -0.26
MKS1-208ENST00000579358 FCHSD2O94868 740 aa13.41□□□□□ -0.26
MKS1-208ENST00000579358 U2AF1L5P0DN76 240 aaPredicted RBP13.41□□□□□ -0.26
MKS1-208ENST00000579358 U2AF1Q01081 240 aaKnown RBP eCLIP13.41□□□□□ -0.26
MKS1-208ENST00000579358 SYTL4Q96C24 671 aaPredicted RBP13.41□□□□□ -0.26
MKS1-208ENST00000579358 DCAF5Q96JK2 942 aa13.41□□□□□ -0.26
MKS1-208ENST00000579358 DOT1LQ8TEK3 1739 aa13.41□□□□□ -0.26
MKS1-208ENST00000579358 AKAP4Q5JQC9 854 aa13.4□□□□□ -0.26
MKS1-208ENST00000579358 KDM6AO15550 1401 aaPredicted RBP13.39□□□□□ -0.27
MKS1-208ENST00000579358 PRKAR2BP31323 418 aa13.39□□□□□ -0.27
MKS1-208ENST00000579358 MTHFSDQ2M296 383 aaKnown RBP13.39□□□□□ -0.27
MKS1-208ENST00000579358 GAS2L2Q8NHY3 880 aa13.39□□□□□ -0.27
MKS1-208ENST00000579358 RREB1Q92766 1687 aa13.38□□□□□ -0.27
MKS1-208ENST00000579358 ERVV-2B6SEH9 535 aa13.38□□□□□ -0.27
MKS1-208ENST00000579358 TOGARAM1Q9Y4F4 1720 aa13.38□□□□□ -0.27
MKS1-208ENST00000579358 ANP32CO43423 234 aa13.37□□□□□ -0.27
MKS1-208ENST00000579358 TXNRD1Q16881 649 aa13.37□□□□□ -0.27
MKS1-208ENST00000579358 TMOD3Q9NYL9 352 aa13.37□□□□□ -0.27
MKS1-208ENST00000579358 BTAF1O14981 1849 aa13.36□□□□□ -0.27
MKS1-208ENST00000579358 SLC27A3Q5K4L6 730 aa13.36□□□□□ -0.27
MKS1-208ENST00000579358 MPRIPQ6WCQ1 1025 aa13.36□□□□□ -0.27
MKS1-208ENST00000579358 PROM2Q8N271 834 aa13.36□□□□□ -0.27
MKS1-208ENST00000579358 PIGBQ92521 554 aa13.36□□□□□ -0.27
MKS1-208ENST00000579358 PNNQ9H307 717 aaKnown RBP13.36□□□□□ -0.27
MKS1-208ENST00000579358 PALLDQ8WX93 1383 aa13.35□□□□□ -0.27
MKS1-208ENST00000579358 MAP3K5Q99683 1374 aa13.35□□□□□ -0.27
MKS1-208ENST00000579358 NEFMP07197 916 aa13.35□□□□□ -0.27
MKS1-208ENST00000579358 SMARCC1Q92922 1105 aaPredicted RBP13.35□□□□□ -0.27
MKS1-208ENST00000579358 PHACTR3Q96KR7 559 aa13.35□□□□□ -0.27
MKS1-208ENST00000579358 MRC1P22897 1456 aa13.35□□□□□ -0.27
MKS1-208ENST00000579358 NUP188Q5SRE5 1749 aa13.34□□□□□ -0.27
MKS1-208ENST00000579358 RNMTO43148 476 aaKnown RBP13.34□□□□□ -0.27
MKS1-208ENST00000579358 NBPF14Q5TI25 921 aa13.34□□□□□ -0.27
MKS1-208ENST00000579358 PLEKHF1Q96S99 279 aa13.34□□□□□ -0.27
MKS1-208ENST00000579358 GNAT3A8MTJ3 354 aa13.33□□□□□ -0.28
MKS1-208ENST00000579358 HMGB2P26583 209 aaKnown RBP13.33□□□□□ -0.28
MKS1-208ENST00000579358 CABP4P57796 275 aa13.33□□□□□ -0.28
MKS1-208ENST00000579358 WDR43Q15061 677 aaKnown RBP eCLIP13.33□□□□□ -0.28
MKS1-208ENST00000579358 ADAMTS7Q9UKP4 1686 aa13.33□□□□□ -0.28
MKS1-208ENST00000579358 SLC52A2Q9HAB3 445 aa13.32□□□□□ -0.28
MKS1-208ENST00000579358 MAPK8IP3Q9UPT6 1336 aa13.32□□□□□ -0.28
MKS1-208ENST00000579358 CEMIPQ8WUJ3 1361 aa13.32□□□□□ -0.28
MKS1-208ENST00000579358 PAPPAQ13219 1627 aa13.31□□□□□ -0.28
MKS1-208ENST00000579358 HTATSF1O43719 755 aaKnown RBP13.31□□□□□ -0.28
MKS1-208ENST00000579358 LGR6Q9HBX8 967 aa13.31□□□□□ -0.28
MKS1-208ENST00000579358 ANO8Q9HCE9 1232 aaPredicted RBP13.31□□□□□ -0.28
MKS1-208ENST00000579358 ATG3Q9NT62 314 aa13.31□□□□□ -0.28
MKS1-208ENST00000579358 LRRC4BQ9NT99 713 aa13.31□□□□□ -0.28
MKS1-208ENST00000579358 CCNL1Q9UK58 526 aaPredicted RBP13.31□□□□□ -0.28
MKS1-208ENST00000579358 NFATC2IPQ8NCF5 419 aa13.3□□□□□ -0.28
MKS1-208ENST00000579358 ASAP1Q9ULH1 1129 aa13.3□□□□□ -0.28
MKS1-208ENST00000579358 LY75O60449 1722 aa13.3□□□□□ -0.28
MKS1-208ENST00000579358 R3HDM1Q15032 1099 aaKnown RBP13.29□□□□□ -0.28
MKS1-208ENST00000579358 NFE2L2Q16236 605 aa13.29□□□□□ -0.28
MKS1-208ENST00000579358 IL17REQ8NFR9 667 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms