RNA–Protein interactions for RNA: ENST00000573955.1

USP43-204, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 2,641 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-204ENST00000573955 C8orf58Q8NAV2 365 aa20.27■□□□□ 0.84
USP43-204ENST00000573955 TMEM57Q8N5G2 664 aa20.26■□□□□ 0.83
USP43-204ENST00000573955 STRCP1A6NGW2 1772 aa20.26■□□□□ 0.83
USP43-204ENST00000573955 HOXC9P31274 260 aa20.25■□□□□ 0.83
USP43-204ENST00000573955 TWISTNBQ3B726 338 aaPredicted RBP20.25■□□□□ 0.83
USP43-204ENST00000573955 TMEM94Q12767 1356 aa20.25■□□□□ 0.83
USP43-204ENST00000573955 KRT24Q2M2I5 525 aa20.25■□□□□ 0.83
USP43-204ENST00000573955 KIF16BQ96L93 1317 aa20.25■□□□□ 0.83
USP43-204ENST00000573955 PDIA4P13667 645 aaKnown RBP20.24■□□□□ 0.83
USP43-204ENST00000573955 MTHFSDQ2M296 383 aaKnown RBP20.24■□□□□ 0.83
USP43-204ENST00000573955 ALDH1L2Q3SY69 923 aa20.23■□□□□ 0.83
USP43-204ENST00000573955 RGPD1P0DJD0 1748 aa20.23■□□□□ 0.83
USP43-204ENST00000573955 ZNF335Q9H4Z2 1342 aaPredicted RBP20.23■□□□□ 0.83
USP43-204ENST00000573955 LMTK3Q96Q04 1460 aa20.23■□□□□ 0.83
USP43-204ENST00000573955 ARHGEF10O15013 1369 aa20.23■□□□□ 0.83
USP43-204ENST00000573955 MIS18AQ9NYP9 233 aa20.23■□□□□ 0.83
USP43-204ENST00000573955 USHBP1Q8N6Y0 703 aa20.23■□□□□ 0.83
USP43-204ENST00000573955 IPO8O15397 1037 aaKnown RBP20.22■□□□□ 0.83
USP43-204ENST00000573955 MARF1Q9Y4F3 1742 aaKnown RBP20.22■□□□□ 0.83
USP43-204ENST00000573955 MRPL50Q8N5N7 158 aaKnown RBP20.21■□□□□ 0.83
USP43-204ENST00000573955 IGSF1Q8N6C5 1336 aa20.21■□□□□ 0.83
USP43-204ENST00000573955 DDX19BQ9UMR2 479 aa20.2■□□□□ 0.82
USP43-204ENST00000573955 RTF1Q92541 710 aaKnown RBP20.19■□□□□ 0.82
USP43-204ENST00000573955 C19orf44Q9H6X5 657 aa20.19■□□□□ 0.82
USP43-204ENST00000573955 RWDD1Q9H446 243 aaPredicted RBP20.18■□□□□ 0.82
USP43-204ENST00000573955 ATF3P18847 181 aa20.18■□□□□ 0.82
USP43-204ENST00000573955 ZNF428Q96B54 188 aa20.17■□□□□ 0.82
USP43-204ENST00000573955 KDRP35968 1356 aa20.16■□□□□ 0.82
USP43-204ENST00000573955 KLHL34Q8N239 644 aa20.16■□□□□ 0.82
USP43-204ENST00000573955 CHL1O00533 1208 aa20.16■□□□□ 0.82
USP43-204ENST00000573955 HSP90AA1P07900 732 aaKnown RBP20.16■□□□□ 0.82
USP43-204ENST00000573955 C8orf34Q49A92 452 aa20.16■□□□□ 0.82
USP43-204ENST00000573955 FAM161AQ3B820 660 aa20.15■□□□□ 0.82
USP43-204ENST00000573955 AEBP2Q6ZN18 517 aaPredicted RBP20.15■□□□□ 0.82
USP43-204ENST00000573955 PDZRN3Q9UPQ7 1066 aa20.15■□□□□ 0.82
USP43-204ENST00000573955 STRCQ7RTU9 1775 aa20.15■□□□□ 0.82
USP43-204ENST00000573955 NWD1Q149M9 1564 aa20.14■□□□□ 0.81
USP43-204ENST00000573955 KRT28Q7Z3Y7 464 aa20.13■□□□□ 0.81
USP43-204ENST00000573955 C1orf115Q9H7X2 142 aa20.13■□□□□ 0.81
USP43-204ENST00000573955 ZBTB40Q9NUA8 1239 aa20.13■□□□□ 0.81
USP43-204ENST00000573955 GAS2L2Q8NHY3 880 aa20.13■□□□□ 0.81
USP43-204ENST00000573955 CABLES1Q8TDN4 633 aa20.13■□□□□ 0.81
USP43-204ENST00000573955 TSPYL4Q9UJ04 414 aa20.13■□□□□ 0.81
USP43-204ENST00000573955 LTN1O94822 1766 aa20.13■□□□□ 0.81
USP43-204ENST00000573955 CRB1P82279 1406 aa20.13■□□□□ 0.81
USP43-204ENST00000573955 C1orf167Q5SNV9 1468 aa20.12■□□□□ 0.81
USP43-204ENST00000573955 BRPF1P55201 1214 aaPredicted RBP20.12■□□□□ 0.81
USP43-204ENST00000573955 IP6K1Q92551 441 aa20.11■□□□□ 0.81
USP43-204ENST00000573955 LRRC59Q96AG4 307 aaKnown RBP20.11■□□□□ 0.81
USP43-204ENST00000573955 BCL11BQ9C0K0 894 aaPredicted RBP20.11■□□□□ 0.81
USP43-204ENST00000573955 NBPF6Q5VWK0 638 aa20.1■□□□□ 0.81
USP43-204ENST00000573955 NBPF4Q96M43 638 aa20.1■□□□□ 0.81
USP43-204ENST00000573955 KIF24Q5T7B8 1368 aa20.1■□□□□ 0.81
USP43-204ENST00000573955 GCP02774 474 aa20.1■□□□□ 0.81
USP43-204ENST00000573955 NFAT5O94916 1531 aa20.1■□□□□ 0.81
USP43-204ENST00000573955 USP54Q70EL1 1684 aa20.09■□□□□ 0.81
USP43-204ENST00000573955 ZC3H6P61129 1189 aaKnown RBP20.09■□□□□ 0.81
USP43-204ENST00000573955 KCNH5Q8NCM2 988 aa20.09■□□□□ 0.81
USP43-204ENST00000573955 GNAT3A8MTJ3 354 aa20.08■□□□□ 0.81
USP43-204ENST00000573955 ARHGAP45Q92619 1136 aa20.08■□□□□ 0.8
USP43-204ENST00000573955 RTL1A6NKG5 1358 aa20.07■□□□□ 0.8
USP43-204ENST00000573955 ZBTB7BO15156 539 aaPredicted RBP20.07■□□□□ 0.8
USP43-204ENST00000573955 NAP1L5Q96NT1 182 aaPredicted RBP20.07■□□□□ 0.8
USP43-204ENST00000573955 ABCC4O15439 1325 aa20.06■□□□□ 0.8
USP43-204ENST00000573955 MST1RQ04912 1400 aa20.06■□□□□ 0.8
USP43-204ENST00000573955 HDAC1Q13547 482 aaPredicted RBP20.06■□□□□ 0.8
USP43-204ENST00000573955 IL17REQ8NFR9 667 aa20.06■□□□□ 0.8
USP43-204ENST00000573955 NECTIN2Q92692 538 aa20.06■□□□□ 0.8
USP43-204ENST00000573955 API5Q9BZZ5 524 aaKnown RBP20.06■□□□□ 0.8
USP43-204ENST00000573955 SLC4A2P04920 1241 aa20.05■□□□□ 0.8
USP43-204ENST00000573955 MAP3K5Q99683 1374 aa20.04■□□□□ 0.8
USP43-204ENST00000573955 MSH6P52701 1360 aa20.04■□□□□ 0.8
USP43-204ENST00000573955 KIAA0232Q92628 1395 aa20.04■□□□□ 0.8
USP43-204ENST00000573955 ARHGEF25Q86VW2 580 aa20.03■□□□□ 0.8
USP43-204ENST00000573955 XIRP1Q702N8 1843 aaKnown RBP20.02■□□□□ 0.8
USP43-204ENST00000573955 NFKBIBQ15653 356 aa20.02■□□□□ 0.8
USP43-204ENST00000573955 CADPS2Q86UW7 1296 aa20.02■□□□□ 0.8
USP43-204ENST00000573955 AXIN2Q9Y2T1 843 aa20.02■□□□□ 0.8
USP43-204ENST00000573955 RGPD2P0DJD1 1756 aa20.02■□□□□ 0.8
USP43-204ENST00000573955 SEC24BO95487 1268 aa20.01■□□□□ 0.79
USP43-204ENST00000573955 RRAGDQ9NQL2 400 aaPredicted RBP20.01■□□□□ 0.79
USP43-204ENST00000573955 HAP1P54257 671 aaPredicted RBP20.01■□□□□ 0.79
USP43-204ENST00000573955 G2E3Q7L622 706 aa20.01■□□□□ 0.79
USP43-204ENST00000573955 ANKRD24Q8TF21 1146 aa20.01■□□□□ 0.79
USP43-204ENST00000573955 CHRNA2Q15822 529 aa20■□□□□ 0.79
USP43-204ENST00000573955 HTATSF1O43719 755 aaKnown RBP20■□□□□ 0.79
USP43-204ENST00000573955 BRINP3Q76B58 766 aa20■□□□□ 0.79
USP43-204ENST00000573955 SMC5Q8IY18 1101 aa19.99■□□□□ 0.79
USP43-204ENST00000573955 LNPKQ9C0E8 428 aa19.99■□□□□ 0.79
USP43-204ENST00000573955 LGR6Q9HBX8 967 aa19.99■□□□□ 0.79
USP43-204ENST00000573955 F6X3S4 739 aa19.98■□□□□ 0.79
USP43-204ENST00000573955 SLC4A10Q6U841 1118 aa19.98■□□□□ 0.79
USP43-204ENST00000573955 TRPM3Q9HCF6 1732 aaPredicted RBP19.98■□□□□ 0.79
USP43-204ENST00000573955 RGS12O14924 1447 aa19.97■□□□□ 0.79
USP43-204ENST00000573955 ZNF530Q6P9A1 599 aaPredicted RBP19.97■□□□□ 0.79
USP43-204ENST00000573955 SIRT2Q8IXJ6 389 aa19.97■□□□□ 0.79
USP43-204ENST00000573955 TAF7Q15545 349 aaPredicted RBP19.97■□□□□ 0.79
USP43-204ENST00000573955 SLAIN2Q9P270 581 aa19.97■□□□□ 0.79
USP43-204ENST00000573955 USP19O94966 1318 aa19.97■□□□□ 0.79
USP43-204ENST00000573955 SLIT3O75094 1523 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms