RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 DOK7Q18PE1 504 aa10.44□□□□□ -0.74
VPS39-213ENST00000570062 ZFP91Q96JP5 570 aaPredicted RBP10.44□□□□□ -0.74
VPS39-213ENST00000570062 TOPAZ1Q8N9V7 1692 aa10.44□□□□□ -0.74
VPS39-213ENST00000570062 CDK12Q9NYV4 1490 aaPredicted RBP10.43□□□□□ -0.74
VPS39-213ENST00000570062 OVOS2A0A0J9YW53 1432 aa10.43□□□□□ -0.74
VPS39-213ENST00000570062 OVOS2Q6IE36 1432 aa10.43□□□□□ -0.74
VPS39-213ENST00000570062 APAF1O14727 1248 aa10.43□□□□□ -0.74
VPS39-213ENST00000570062 U2SURPO15042 1029 aaKnown RBP10.43□□□□□ -0.74
VPS39-213ENST00000570062 HOXB1P14653 301 aaPredicted RBP10.43□□□□□ -0.74
VPS39-213ENST00000570062 HSPA1LP34931 641 aa10.43□□□□□ -0.74
VPS39-213ENST00000570062 ABTB2Q8N961 1025 aa10.43□□□□□ -0.74
VPS39-213ENST00000570062 KRTAP3-3Q9BYR6 98 aa10.43□□□□□ -0.74
VPS39-213ENST00000570062 KRTAP3-2Q9BYR7 98 aa10.43□□□□□ -0.74
VPS39-213ENST00000570062 MON2Q7Z3U7 1717 aa10.43□□□□□ -0.74
VPS39-213ENST00000570062 ANKRD26Q9UPS8 1709 aa10.43□□□□□ -0.74
VPS39-213ENST00000570062 TMEM94Q12767 1356 aa10.42□□□□□ -0.74
VPS39-213ENST00000570062 FMN2Q9NZ56 1722 aa10.42□□□□□ -0.74
VPS39-213ENST00000570062 PPM1GO15355 546 aaPredicted RBP10.42□□□□□ -0.74
VPS39-213ENST00000570062 LMOD3Q0VAK6 560 aa10.42□□□□□ -0.74
VPS39-213ENST00000570062 MICALL2Q8IY33 904 aa10.42□□□□□ -0.74
VPS39-213ENST00000570062 LRRC7Q96NW7 1537 aa10.42□□□□□ -0.74
VPS39-213ENST00000570062 ZNF521Q96K83 1311 aa10.41□□□□□ -0.74
VPS39-213ENST00000570062 IL13P35225 146 aa10.41□□□□□ -0.74
VPS39-213ENST00000570062 TCP11L2Q8N4U5 519 aa10.41□□□□□ -0.74
VPS39-213ENST00000570062 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.41□□□□□ -0.74
VPS39-213ENST00000570062 SUPT16HQ9Y5B9 1047 aaKnown RBP10.41□□□□□ -0.74
VPS39-213ENST00000570062 AKAP12Q02952 1782 aa10.41□□□□□ -0.74
VPS39-213ENST00000570062 SBNO1A3KN83 1393 aa10.4□□□□□ -0.74
VPS39-213ENST00000570062 KIF20BQ96Q89 1820 aa10.4□□□□□ -0.74
VPS39-213ENST00000570062 NPHP3Q7Z494 1330 aa10.4□□□□□ -0.74
VPS39-213ENST00000570062 RIMBP2O15034 1052 aa10.4□□□□□ -0.74
VPS39-213ENST00000570062 CT47B1P0C2W7 299 aaPredicted RBP10.4□□□□□ -0.74
VPS39-213ENST00000570062 MYH16Q9H6N6 1097 aa10.4□□□□□ -0.74
VPS39-213ENST00000570062 C1orf167Q5SNV9 1468 aa10.4□□□□□ -0.74
VPS39-213ENST00000570062 RTL1A6NKG5 1358 aa10.39□□□□□ -0.75
VPS39-213ENST00000570062 FLT4P35916 1363 aa10.39□□□□□ -0.75
VPS39-213ENST00000570062 IL16Q14005 1332 aa10.39□□□□□ -0.75
VPS39-213ENST00000570062 AMPHP49418 695 aa10.39□□□□□ -0.75
VPS39-213ENST00000570062 SLFN5Q08AF3 891 aa10.39□□□□□ -0.75
VPS39-213ENST00000570062 KRT28Q7Z3Y7 464 aa10.39□□□□□ -0.75
VPS39-213ENST00000570062 WWC1Q8IX03 1113 aa10.39□□□□□ -0.75
VPS39-213ENST00000570062 CCDC146Q8IYE0 955 aa10.39□□□□□ -0.75
VPS39-213ENST00000570062 TRMT2AQ8IZ69 625 aaKnown RBP10.39□□□□□ -0.75
VPS39-213ENST00000570062 PLEKHF1Q96S99 279 aa10.39□□□□□ -0.75
VPS39-213ENST00000570062 RCAN3Q9UKA8 241 aa10.39□□□□□ -0.75
VPS39-213ENST00000570062 MST1RQ04912 1400 aa10.39□□□□□ -0.75
VPS39-213ENST00000570062 ERBB3P21860 1342 aa10.38□□□□□ -0.75
VPS39-213ENST00000570062 RNF123Q5XPI4 1314 aa10.38□□□□□ -0.75
VPS39-213ENST00000570062 COL3A1P02461 1466 aaPredicted RBP10.38□□□□□ -0.75
VPS39-213ENST00000570062 MS4A4AQ96JQ5 239 aa10.38□□□□□ -0.75
VPS39-213ENST00000570062 SALL2Q9Y467 1007 aaPredicted RBP10.38□□□□□ -0.75
VPS39-213ENST00000570062 EMILIN1Q9Y6C2 1016 aa10.38□□□□□ -0.75
VPS39-213ENST00000570062 FOXO3O43524 673 aa10.37□□□□□ -0.75
VPS39-213ENST00000570062 TMPOP42166 694 aaKnown RBP10.37□□□□□ -0.75
VPS39-213ENST00000570062 HAP1P54257 671 aaPredicted RBP10.37□□□□□ -0.75
VPS39-213ENST00000570062 TMEM92Q6UXU6 159 aa10.37□□□□□ -0.75
VPS39-213ENST00000570062 NRKQ7Z2Y5 1582 aa10.37□□□□□ -0.75
VPS39-213ENST00000570062 NALCNQ8IZF0 1738 aa10.36□□□□□ -0.75
VPS39-213ENST00000570062 RRS1Q15050 365 aaKnown RBP10.36□□□□□ -0.75
VPS39-213ENST00000570062 DUSP27Q5VZP5 1158 aa10.36□□□□□ -0.75
VPS39-213ENST00000570062 ORAI2Q96SN7 254 aa10.36□□□□□ -0.75
VPS39-213ENST00000570062 RSPH6AQ9H0K4 717 aa10.36□□□□□ -0.75
VPS39-213ENST00000570062 KIF1AQ12756 1690 aa10.36□□□□□ -0.75
VPS39-213ENST00000570062 MAP3K19Q56UN5 1328 aa10.35□□□□□ -0.75
VPS39-213ENST00000570062 RIPK4P57078 832 aa10.35□□□□□ -0.75
VPS39-213ENST00000570062 EIF4A2Q14240 407 aaKnown RBP10.35□□□□□ -0.75
VPS39-213ENST00000570062 NFE2L2Q16236 605 aa10.35□□□□□ -0.75
VPS39-213ENST00000570062 IP6K1Q92551 441 aa10.35□□□□□ -0.75
VPS39-213ENST00000570062 ZNF428Q96B54 188 aa10.35□□□□□ -0.75
VPS39-213ENST00000570062 RBM33Q96EV2 1170 aaKnown RBP10.35□□□□□ -0.75
VPS39-213ENST00000570062 ARHGEF10O15013 1369 aa10.35□□□□□ -0.75
VPS39-213ENST00000570062 HTATSF1O43719 755 aaKnown RBP10.34□□□□□ -0.75
VPS39-213ENST00000570062 PRKAR2BP31323 418 aa10.34□□□□□ -0.75
VPS39-213ENST00000570062 SLAIN2Q9P270 581 aa10.34□□□□□ -0.75
VPS39-213ENST00000570062 TAOK2Q9UL54 1235 aa10.34□□□□□ -0.75
VPS39-213ENST00000570062 ZNF335Q9H4Z2 1342 aaPredicted RBP10.33□□□□□ -0.76
VPS39-213ENST00000570062 SRCAPQ6ZRS2 3230 aa10.33□□□□□ -0.76
VPS39-213ENST00000570062 GCP02774 474 aa10.33□□□□□ -0.76
VPS39-213ENST00000570062 HOXC9P31274 260 aa10.33□□□□□ -0.76
VPS39-213ENST00000570062 PIP4K2BP78356 416 aa10.33□□□□□ -0.76
VPS39-213ENST00000570062 GAS2L2Q8NHY3 880 aa10.33□□□□□ -0.76
VPS39-213ENST00000570062 CDCA7LQ96GN5 454 aa10.33□□□□□ -0.76
VPS39-213ENST00000570062 USP19O94966 1318 aa10.33□□□□□ -0.76
VPS39-213ENST00000570062 SHPRHQ149N8 1683 aa10.32□□□□□ -0.76
VPS39-213ENST00000570062 USP54Q70EL1 1684 aa10.32□□□□□ -0.76
VPS39-213ENST00000570062 MS4A1P11836 297 aa10.32□□□□□ -0.76
VPS39-213ENST00000570062 NEUROD2Q15784 382 aa10.32□□□□□ -0.76
VPS39-213ENST00000570062 HSP90AB2PQ58FF8 381 aa10.32□□□□□ -0.76
VPS39-213ENST00000570062 SULT6B1Q6IMI4 303 aa10.32□□□□□ -0.76
VPS39-213ENST00000570062 BCL11BQ9C0K0 894 aaPredicted RBP10.32□□□□□ -0.76
VPS39-213ENST00000570062 ZSWIM6Q9HCJ5 1215 aa10.32□□□□□ -0.76
VPS39-213ENST00000570062 PPP4R2Q9NY27 417 aa10.32□□□□□ -0.76
VPS39-213ENST00000570062 RRP1P56182 461 aaKnown RBP10.31□□□□□ -0.76
VPS39-213ENST00000570062 GNAI1P63096 354 aa10.31□□□□□ -0.76
VPS39-213ENST00000570062 AAMPQ13685 434 aa10.31□□□□□ -0.76
VPS39-213ENST00000570062 ARHGEF25Q86VW2 580 aa10.31□□□□□ -0.76
VPS39-213ENST00000570062 CHMP4AQ9BY43 222 aa10.31□□□□□ -0.76
VPS39-213ENST00000570062 RGS17Q9UGC6 210 aaPredicted RBP10.31□□□□□ -0.76
VPS39-213ENST00000570062 IGSF1Q8N6C5 1336 aa10.31□□□□□ -0.76
VPS39-213ENST00000570062 KDRP35968 1356 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms