RNA–Protein interactions for RNA: ENST00000569225.5

CHD9-219, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 1,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-219ENST00000569225 WDR43Q15061 677 aaKnown RBP eCLIP12.16□□□□□ -0.46
CHD9-219ENST00000569225 AEBP1Q8IUX7 1158 aa12.16□□□□□ -0.46
CHD9-219ENST00000569225 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.16□□□□□ -0.468e-8■■■□□ 18.5
CHD9-219ENST00000569225 AMOTQ4VCS5 1084 aa12.15□□□□□ -0.46
CHD9-219ENST00000569225 PLEKHO1Q53GL0 409 aaPredicted RBP12.15□□□□□ -0.46
CHD9-219ENST00000569225 PNNQ9H307 717 aaKnown RBP12.15□□□□□ -0.46
CHD9-219ENST00000569225 FCHSD2O94868 740 aa12.14□□□□□ -0.47
CHD9-219ENST00000569225 PCDH11XQ9BZA7 1347 aa12.14□□□□□ -0.47
CHD9-219ENST00000569225 PCDH11YQ9BZA8 1340 aa12.14□□□□□ -0.47
CHD9-219ENST00000569225 NEFMP07197 916 aa12.14□□□□□ -0.47
CHD9-219ENST00000569225 MRS2Q9HD23 443 aa12.14□□□□□ -0.47
CHD9-219ENST00000569225 RGPD1P0DJD0 1748 aa12.13□□□□□ -0.47
CHD9-219ENST00000569225 PARP4Q9UKK3 1724 aaKnown RBP12.13□□□□□ -0.47
CHD9-219ENST00000569225 ILDR2Q71H61 639 aa12.13□□□□□ -0.47
CHD9-219ENST00000569225 DDX54Q8TDD1 881 aaKnown RBP12.13□□□□□ -0.47
CHD9-219ENST00000569225 FAM196AQ6ZSG2 479 aa12.12□□□□□ -0.47
CHD9-219ENST00000569225 LRRC37A3O60309 1634 aa12.12□□□□□ -0.47
CHD9-219ENST00000569225 PRKAR2BP31323 418 aa12.12□□□□□ -0.47
CHD9-219ENST00000569225 MARCH10Q8NA82 808 aaPredicted RBP12.12□□□□□ -0.47
CHD9-219ENST00000569225 RSPH6AQ9H0K4 717 aa12.12□□□□□ -0.47
CHD9-219ENST00000569225 WNK3Q9BYP7 1800 aa12.11□□□□□ -0.47
CHD9-219ENST00000569225 RGPD2P0DJD1 1756 aa12.11□□□□□ -0.47
CHD9-219ENST00000569225 C1orf141Q5JVX7 400 aa12.1□□□□□ -0.47
CHD9-219ENST00000569225 ZNF530Q6P9A1 599 aaPredicted RBP12.1□□□□□ -0.47
CHD9-219ENST00000569225 IFNL2Q8IZJ0 200 aa12.1□□□□□ -0.47
CHD9-219ENST00000569225 MAPK8IP3Q9UPT6 1336 aa12.1□□□□□ -0.47
CHD9-219ENST00000569225 CCER2I3L3R5 266 aa12.1□□□□□ -0.47
CHD9-219ENST00000569225 HSP90AB1P08238 724 aaKnown RBP12.1□□□□□ -0.47
CHD9-219ENST00000569225 GAS2L2Q8NHY3 880 aa12.1□□□□□ -0.47
CHD9-219ENST00000569225 BCL9O00512 1426 aa12.1□□□□□ -0.47
CHD9-219ENST00000569225 CYP27B1O15528 508 aa12.08□□□□□ -0.48
CHD9-219ENST00000569225 PHKG2P15735 406 aa12.08□□□□□ -0.48
CHD9-219ENST00000569225 FAM182BQ5T319 152 aa12.08□□□□□ -0.48
CHD9-219ENST00000569225 CCDC184Q52MB2 194 aa12.08□□□□□ -0.48
CHD9-219ENST00000569225 PNISRQ8TF01 805 aaKnown RBP12.08□□□□□ -0.48
CHD9-219ENST00000569225 ADAMTS8Q9UP79 889 aa12.08□□□□□ -0.48
CHD9-219ENST00000569225 NKX1-1Q15270 411 aaPredicted RBP12.07□□□□□ -0.48
CHD9-219ENST00000569225 MTHFSDQ2M296 383 aaKnown RBP12.07□□□□□ -0.48
CHD9-219ENST00000569225 AKAP4Q5JQC9 854 aa12.07□□□□□ -0.48
CHD9-219ENST00000569225 CCDC125Q86Z20 511 aa12.07□□□□□ -0.48
CHD9-219ENST00000569225 SF3B2Q13435 895 aaKnown RBP12.06□□□□□ -0.48
CHD9-219ENST00000569225 DCAF5Q96JK2 942 aa12.06□□□□□ -0.48
CHD9-219ENST00000569225 PHACTR3Q96KR7 559 aa12.06□□□□□ -0.48
CHD9-219ENST00000569225 PKD1L3Q7Z443 1732 aa12.06□□□□□ -0.48
CHD9-219ENST00000569225 MIER1Q8N108 512 aa12.06□□□□□ -0.48
CHD9-219ENST00000569225 RUNDC1Q96C34 613 aa12.06□□□□□ -0.48
CHD9-219ENST00000569225 PLEKHF1Q96S99 279 aa12.06□□□□□ -0.48
CHD9-219ENST00000569225 BRWD3Q6RI45 1802 aa12.05□□□□□ -0.48
CHD9-219ENST00000569225 BCL11BQ9C0K0 894 aaPredicted RBP12.05□□□□□ -0.48
CHD9-219ENST00000569225 MAP3K5Q99683 1374 aa12.04□□□□□ -0.48
CHD9-219ENST00000569225 GNAT3A8MTJ3 354 aa12.04□□□□□ -0.48
CHD9-219ENST00000569225 TRIM37O94972 964 aa12.04□□□□□ -0.48
CHD9-219ENST00000569225 NFE2L2Q16236 605 aa12.04□□□□□ -0.48
CHD9-219ENST00000569225 CCDC146Q8IYE0 955 aa12.04□□□□□ -0.48
CHD9-219ENST00000569225 RTF1Q92541 710 aaKnown RBP12.04□□□□□ -0.48
CHD9-219ENST00000569225 SYTL4Q96C24 671 aaPredicted RBP12.04□□□□□ -0.48
CHD9-219ENST00000569225 ACSBG1Q96GR2 724 aa12.04□□□□□ -0.48
CHD9-219ENST00000569225 ERVV-2B6SEH9 535 aa12.03□□□□□ -0.48
CHD9-219ENST00000569225 HTATSF1O43719 755 aaKnown RBP12.03□□□□□ -0.48
CHD9-219ENST00000569225 PRIM1P49642 420 aaKnown RBP12.03□□□□□ -0.48
CHD9-219ENST00000569225 MPRIPQ6WCQ1 1025 aa12.03□□□□□ -0.48
CHD9-219ENST00000569225 LMOD3Q0VAK6 560 aa12.02□□□□□ -0.48
CHD9-219ENST00000569225 FAM9BQ8IZU0 186 aa12.02□□□□□ -0.48
CHD9-219ENST00000569225 UPF1Q92900 1129 aaKnown RBP eCLIP12.02□□□□□ -0.48
CHD9-219ENST00000569225 SOCS7O14512 581 aa12.02□□□□□ -0.49
CHD9-219ENST00000569225 CABP4P57796 275 aa12.02□□□□□ -0.49
CHD9-219ENST00000569225 TMOD3Q9NYL9 352 aa12.02□□□□□ -0.49
CHD9-219ENST00000569225 SHANK3Q9BYB0 1731 aa12.01□□□□□ -0.49
CHD9-219ENST00000569225 KCNQ2O43526 872 aa12.01□□□□□ -0.49
CHD9-219ENST00000569225 KDM6AO15550 1401 aaPredicted RBP12□□□□□ -0.49
CHD9-219ENST00000569225 RNMTO43148 476 aaKnown RBP12□□□□□ -0.49
CHD9-219ENST00000569225 APBA3O96018 575 aa12□□□□□ -0.49
CHD9-219ENST00000569225 TMPOP42166 694 aaKnown RBP12□□□□□ -0.49
CHD9-219ENST00000569225 BAG6P46379 1132 aa12□□□□□ -0.49
CHD9-219ENST00000569225 RIPK4P57078 832 aa12□□□□□ -0.49
CHD9-219ENST00000569225 TEFQ10587 303 aa12□□□□□ -0.49
CHD9-219ENST00000569225 APAF1O14727 1248 aa11.99□□□□□ -0.49
CHD9-219ENST00000569225 PIGBQ92521 554 aa11.98□□□□□ -0.49
CHD9-219ENST00000569225 SMARCC1Q92922 1105 aaPredicted RBP11.98□□□□□ -0.49
CHD9-219ENST00000569225 SLC52A2Q9HAB3 445 aa11.98□□□□□ -0.49
CHD9-219ENST00000569225 LGR6Q9HBX8 967 aa11.98□□□□□ -0.49
CHD9-219ENST00000569225 NHSQ6T4R5 1651 aa11.98□□□□□ -0.49
CHD9-219ENST00000569225 NEUROD2Q15784 382 aa11.97□□□□□ -0.49
CHD9-219ENST00000569225 MCM10Q7L590 875 aa11.97□□□□□ -0.49
CHD9-219ENST00000569225 NFATC2IPQ8NCF5 419 aa11.97□□□□□ -0.49
CHD9-219ENST00000569225 IL17REQ8NFR9 667 aa11.97□□□□□ -0.49
CHD9-219ENST00000569225 RRP7AQ9Y3A4 280 aaKnown RBP11.97□□□□□ -0.49
CHD9-219ENST00000569225 CEMIPQ8WUJ3 1361 aa11.97□□□□□ -0.49
CHD9-219ENST00000569225 PLSCR1O15162 318 aa11.97□□□□□ -0.49
CHD9-219ENST00000569225 PTF1AQ7RTS3 328 aa11.97□□□□□ -0.49
CHD9-219ENST00000569225 NGEFQ8N5V2 710 aa11.97□□□□□ -0.49
CHD9-219ENST00000569225 DOT1LQ8TEK3 1739 aa11.96□□□□□ -0.49
CHD9-219ENST00000569225 HMGB2P26583 209 aaKnown RBP11.96□□□□□ -0.49
CHD9-219ENST00000569225 CALD1Q05682 793 aaKnown RBP11.96□□□□□ -0.49
CHD9-219ENST00000569225 NCBP3Q53F19 620 aaKnown RBP11.96□□□□□ -0.49
CHD9-219ENST00000569225 EP400Q96L91 3159 aa11.96□□□□□ -0.49
CHD9-219ENST00000569225 MRC1P22897 1456 aa11.96□□□□□ -0.5
CHD9-219ENST00000569225 DCTN1Q14203 1278 aa11.95□□□□□ -0.5
CHD9-219ENST00000569225 PALLDQ8WX93 1383 aa11.94□□□□□ -0.5
CHD9-219ENST00000569225 EN1Q05925 392 aaPredicted RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms