RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 PNISRQ8TF01 805 aaKnown RBP13.95□□□□□ -0.18
CDH3-210ENST00000569117 NUDCQ9Y266 331 aa13.95□□□□□ -0.18
CDH3-210ENST00000569117 BCL9LQ86UU0 1499 aa13.94□□□□□ -0.18
CDH3-210ENST00000569117 CRB1P82279 1406 aa13.94□□□□□ -0.18
CDH3-210ENST00000569117 GSE1Q14687 1217 aa13.94□□□□□ -0.18
CDH3-210ENST00000569117 WDR43Q15061 677 aaKnown RBP eCLIP13.94□□□□□ -0.18
CDH3-210ENST00000569117 BTG4Q9NY30 223 aa13.94□□□□□ -0.18
CDH3-210ENST00000569117 MEX3CQ5U5Q3 659 aaKnown RBP13.93□□□□□ -0.18
CDH3-210ENST00000569117 FNBP4Q8N3X1 1017 aaPredicted RBP13.93□□□□□ -0.18
CDH3-210ENST00000569117 C8orf37Q96NL8 207 aa13.93□□□□□ -0.18
CDH3-210ENST00000569117 PKD1L3Q7Z443 1732 aa13.93□□□□□ -0.18
CDH3-210ENST00000569117 LTV1Q96GA3 475 aaPredicted RBP13.92□□□□□ -0.18
CDH3-210ENST00000569117 PLEKHG2Q9H7P9 1386 aa13.92□□□□□ -0.18
CDH3-210ENST00000569117 U2SURPO15042 1029 aaKnown RBP13.91□□□□□ -0.18
CDH3-210ENST00000569117 NGLY1Q96IV0 654 aa13.91□□□□□ -0.18
CDH3-210ENST00000569117 EYA1Q99502 592 aa13.91□□□□□ -0.18
CDH3-210ENST00000569117 U2AF1L5P0DN76 240 aaPredicted RBP13.9□□□□□ -0.18
CDH3-210ENST00000569117 CSB-PGBD3P0DP91 1061 aa13.9□□□□□ -0.18
CDH3-210ENST00000569117 U2AF1Q01081 240 aaKnown RBP eCLIP13.9□□□□□ -0.18
CDH3-210ENST00000569117 NKX1-1Q15270 411 aaPredicted RBP13.9□□□□□ -0.18
CDH3-210ENST00000569117 NBPF6Q5VWK0 638 aa13.9□□□□□ -0.18
CDH3-210ENST00000569117 NBPF4Q96M43 638 aa13.9□□□□□ -0.18
CDH3-210ENST00000569117 STRN4Q9NRL3 753 aa13.9□□□□□ -0.18
CDH3-210ENST00000569117 AFF2P51816 1311 aa13.9□□□□□ -0.19
CDH3-210ENST00000569117 GLI3P10071 1580 aa13.89□□□□□ -0.19
CDH3-210ENST00000569117 LARP1Q6PKG0 1096 aaKnown RBP13.89□□□□□ -0.19
CDH3-210ENST00000569117 UNC5CLQ8IV45 518 aa13.89□□□□□ -0.19
CDH3-210ENST00000569117 CARD10Q9BWT7 1032 aa13.89□□□□□ -0.19
CDH3-210ENST00000569117 RSPH6AQ9H0K4 717 aa13.89□□□□□ -0.19
CDH3-210ENST00000569117 ADAMTS8Q9UP79 889 aa13.89□□□□□ -0.19
CDH3-210ENST00000569117 SHANK3Q9BYB0 1731 aa13.89□□□□□ -0.19
CDH3-210ENST00000569117 MEGF6O75095 1541 aa13.89□□□□□ -0.19
CDH3-210ENST00000569117 ATRNO75882 1429 aa13.89□□□□□ -0.19
CDH3-210ENST00000569117 EVA1CP58658 441 aa13.88□□□□□ -0.19
CDH3-210ENST00000569117 SULT6B1Q6IMI4 303 aa13.88□□□□□ -0.19
CDH3-210ENST00000569117 TOM1L2Q6ZVM7 507 aa13.88□□□□□ -0.19
CDH3-210ENST00000569117 AEBP1Q8IUX7 1158 aa13.88□□□□□ -0.19
CDH3-210ENST00000569117 FAM9BQ8IZU0 186 aa13.88□□□□□ -0.19
CDH3-210ENST00000569117 NLRP2Q9NX02 1062 aa13.88□□□□□ -0.19
CDH3-210ENST00000569117 USP21Q9UK80 565 aa13.88□□□□□ -0.19
CDH3-210ENST00000569117 LRRC37A3O60309 1634 aa13.88□□□□□ -0.19
CDH3-210ENST00000569117 DISP2A7MBM2 1401 aa13.88□□□□□ -0.19
CDH3-210ENST00000569117 THSD7AQ9UPZ6 1657 aa13.88□□□□□ -0.19
CDH3-210ENST00000569117 GTPBP6O43824 516 aaPredicted RBP13.87□□□□□ -0.19
CDH3-210ENST00000569117 FCHSD2O94868 740 aa13.87□□□□□ -0.19
CDH3-210ENST00000569117 HMOX1P09601 288 aa13.87□□□□□ -0.19
CDH3-210ENST00000569117 ILDR1Q86SU0 546 aaPredicted RBP13.87□□□□□ -0.19
CDH3-210ENST00000569117 USHBP1Q8N6Y0 703 aa13.87□□□□□ -0.19
CDH3-210ENST00000569117 OVOS2A0A0G2JMS6 1433 aa13.87□□□□□ -0.19
CDH3-210ENST00000569117 SPATA31A5Q5VU36 1347 aa13.87□□□□□ -0.19
CDH3-210ENST00000569117 SPATA31A7Q8IWB4 1347 aa13.87□□□□□ -0.19
CDH3-210ENST00000569117 DLG5Q8TDM6 1919 aa13.86□□□□□ -0.19
CDH3-210ENST00000569117 VPS72Q15906 364 aa13.86□□□□□ -0.19
CDH3-210ENST00000569117 SPATA31A1Q5TZJ5 1347 aa13.86□□□□□ -0.19
CDH3-210ENST00000569117 RIOK3O14730 519 aaKnown RBP13.85□□□□□ -0.19
CDH3-210ENST00000569117 PRKAR2BP31323 418 aa13.85□□□□□ -0.19
CDH3-210ENST00000569117 PLEKHF1Q96S99 279 aa13.85□□□□□ -0.19
CDH3-210ENST00000569117 PNNQ9H307 717 aaKnown RBP13.85□□□□□ -0.19
CDH3-210ENST00000569117 NUBP1P53384 320 aa13.84□□□□□ -0.19
CDH3-210ENST00000569117 THRAP3Q9Y2W1 955 aaKnown RBP13.84□□□□□ -0.19
CDH3-210ENST00000569117 VIRMAQ69YN4 1812 aaKnown RBP13.83□□□□□ -0.2
CDH3-210ENST00000569117 TNS2Q63HR2 1409 aa13.83□□□□□ -0.2
CDH3-210ENST00000569117 TCP11L2Q8N4U5 519 aa13.83□□□□□ -0.2
CDH3-210ENST00000569117 RUNDC1Q96C34 613 aa13.83□□□□□ -0.2
CDH3-210ENST00000569117 TRPC5Q9UL62 973 aaPredicted RBP13.83□□□□□ -0.2
CDH3-210ENST00000569117 MAPK8IP3Q9UPT6 1336 aa13.83□□□□□ -0.2
CDH3-210ENST00000569117 ADAMTS7Q9UKP4 1686 aa13.82□□□□□ -0.2
CDH3-210ENST00000569117 DCAF8Q5TAQ9 597 aa13.82□□□□□ -0.2
CDH3-210ENST00000569117 ZNF772Q68DY9 489 aaPredicted RBP13.82□□□□□ -0.2
CDH3-210ENST00000569117 CCDC146Q8IYE0 955 aa13.82□□□□□ -0.2
CDH3-210ENST00000569117 RAPGEF4Q8WZA2 1011 aa13.82□□□□□ -0.2
CDH3-210ENST00000569117 NEFMP07197 916 aa13.81□□□□□ -0.2
CDH3-210ENST00000569117 IL2RBP14784 551 aa13.81□□□□□ -0.2
CDH3-210ENST00000569117 BARGINQ6ZT62 677 aa13.81□□□□□ -0.2
CDH3-210ENST00000569117 TATP17735 454 aaPredicted RBP13.8□□□□□ -0.2
CDH3-210ENST00000569117 CDCA7Q9BWT1 371 aaPredicted RBP13.8□□□□□ -0.2
CDH3-210ENST00000569117 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.8□□□□□ -0.2
CDH3-210ENST00000569117 USP35Q9P2H5 1018 aa13.8□□□□□ -0.2
CDH3-210ENST00000569117 CCDC9Q9Y3X0 531 aaKnown RBP13.8□□□□□ -0.2
CDH3-210ENST00000569117 GJD4Q96KN9 370 aaPredicted RBP13.79□□□□□ -0.2
CDH3-210ENST00000569117 PHACTR3Q96KR7 559 aa13.79□□□□□ -0.2
CDH3-210ENST00000569117 SCN11AQ9UI33 1791 aa13.78□□□□□ -0.2
CDH3-210ENST00000569117 TULP1O00294 542 aaPredicted RBP13.78□□□□□ -0.2
CDH3-210ENST00000569117 AMOTQ4VCS5 1084 aa13.78□□□□□ -0.2
CDH3-210ENST00000569117 STK25O00506 426 aa13.77□□□□□ -0.21
CDH3-210ENST00000569117 APAF1O14727 1248 aa13.77□□□□□ -0.21
CDH3-210ENST00000569117 NFE2L2Q16236 605 aa13.77□□□□□ -0.21
CDH3-210ENST00000569117 NGEFQ8N5V2 710 aa13.77□□□□□ -0.21
CDH3-210ENST00000569117 GAS2L2Q8NHY3 880 aa13.77□□□□□ -0.21
CDH3-210ENST00000569117 MAP3K5Q99683 1374 aa13.77□□□□□ -0.21
CDH3-210ENST00000569117 TOGARAM1Q9Y4F4 1720 aa13.77□□□□□ -0.21
CDH3-210ENST00000569117 BRWD3Q6RI45 1802 aa13.76□□□□□ -0.21
CDH3-210ENST00000569117 PCDH11XQ9BZA7 1347 aa13.76□□□□□ -0.21
CDH3-210ENST00000569117 PCDH11YQ9BZA8 1340 aa13.76□□□□□ -0.21
CDH3-210ENST00000569117 TMPOP42166 694 aaKnown RBP13.76□□□□□ -0.21
CDH3-210ENST00000569117 MTHFSDQ2M296 383 aaKnown RBP13.76□□□□□ -0.21
CDH3-210ENST00000569117 PLEKHO1Q53GL0 409 aaPredicted RBP13.76□□□□□ -0.21
CDH3-210ENST00000569117 QTRT2Q9H974 415 aaKnown RBP13.76□□□□□ -0.21
CDH3-210ENST00000569117 SPG7Q9UQ90 795 aa13.76□□□□□ -0.21
CDH3-210ENST00000569117 GTF3C3Q9Y5Q9 886 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms