RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ABCC4O15439 1325 aa17.65■□□□□ 0.42
VPS35-210ENST00000568784 G2E3Q7L622 706 aa17.65■□□□□ 0.42
VPS35-210ENST00000568784 YTHDC2Q9H6S0 1430 aaKnown RBP17.65■□□□□ 0.42
VPS35-210ENST00000568784 HSP90AB2PQ58FF8 381 aa17.64■□□□□ 0.42
VPS35-210ENST00000568784 CWC22Q9HCG8 908 aaKnown RBP17.64■□□□□ 0.42
VPS35-210ENST00000568784 PPRC1Q5VV67 1664 aaKnown RBP17.64■□□□□ 0.41
VPS35-210ENST00000568784 NCBP3Q53F19 620 aaKnown RBP17.64■□□□□ 0.41
VPS35-210ENST00000568784 TMX3Q96JJ7 454 aa17.64■□□□□ 0.41
VPS35-210ENST00000568784 AK9Q5TCS8 1911 aa17.64■□□□□ 0.41
VPS35-210ENST00000568784 AMPHP49418 695 aa17.63■□□□□ 0.41
VPS35-210ENST00000568784 EIF2S2P20042 333 aaKnown RBP17.63■□□□□ 0.41
VPS35-210ENST00000568784 MSH6P52701 1360 aa17.63■□□□□ 0.41
VPS35-210ENST00000568784 UQCRHLA0A096LP55 91 aa17.63■□□□□ 0.41
VPS35-210ENST00000568784 UQCRHP07919 91 aa17.63■□□□□ 0.41
VPS35-210ENST00000568784 NSFL1CQ9UNZ2 370 aaKnown RBP17.63■□□□□ 0.41
VPS35-210ENST00000568784 WASLO00401 505 aaPredicted RBP17.62■□□□□ 0.41
VPS35-210ENST00000568784 TMEM63CQ9P1W3 806 aa17.62■□□□□ 0.41
VPS35-210ENST00000568784 CCDC61Q9Y6R9 512 aa17.62■□□□□ 0.41
VPS35-210ENST00000568784 VIRMAQ69YN4 1812 aaKnown RBP17.62■□□□□ 0.41
VPS35-210ENST00000568784 NUTM1Q86Y26 1132 aa17.62■□□□□ 0.41
VPS35-210ENST00000568784 DDX54Q8TDD1 881 aaKnown RBP17.62■□□□□ 0.41
VPS35-210ENST00000568784 PDE1AP54750 535 aa17.61■□□□□ 0.41
VPS35-210ENST00000568784 GPT2Q8TD30 523 aa17.61■□□□□ 0.41
VPS35-210ENST00000568784 ZNF830Q96NB3 372 aaPredicted RBP17.61■□□□□ 0.41
VPS35-210ENST00000568784 GLI2P10070 1586 aa17.61■□□□□ 0.41
VPS35-210ENST00000568784 ADGRB3O60242 1522 aa17.61■□□□□ 0.41
VPS35-210ENST00000568784 GNAI2P04899 355 aa17.61■□□□□ 0.41
VPS35-210ENST00000568784 SYAP1Q96A49 352 aaPredicted RBP17.6■□□□□ 0.41
VPS35-210ENST00000568784 KCNJ4P48050 445 aa17.6■□□□□ 0.41
VPS35-210ENST00000568784 EIF4A2Q14240 407 aaKnown RBP17.6■□□□□ 0.41
VPS35-210ENST00000568784 CYB5RLQ6IPT4 315 aa17.6■□□□□ 0.41
VPS35-210ENST00000568784 LRRCC1Q9C099 1032 aa17.6■□□□□ 0.41
VPS35-210ENST00000568784 ADGRB1O14514 1584 aa17.6■□□□□ 0.41
VPS35-210ENST00000568784 UHRF1BP1LA0JNW5 1464 aa17.6■□□□□ 0.41
VPS35-210ENST00000568784 FIBPO43427 364 aa17.59■□□□□ 0.41
VPS35-210ENST00000568784 KIAA1210Q9ULL0 1709 aa17.59■□□□□ 0.41
VPS35-210ENST00000568784 NGDNQ8NEJ9 315 aaKnown RBP17.58■□□□□ 0.41
VPS35-210ENST00000568784 TSPY26PQ9H489 355 aa17.58■□□□□ 0.41
VPS35-210ENST00000568784 POGZQ7Z3K3 1410 aa17.58■□□□□ 0.4
VPS35-210ENST00000568784 KIAA2012Q0VF49 1180 aa17.58■□□□□ 0.4
VPS35-210ENST00000568784 RIMS2Q9UQ26 1411 aa17.58■□□□□ 0.4
VPS35-210ENST00000568784 SURF6O75683 361 aaKnown RBP17.58■□□□□ 0.4
VPS35-210ENST00000568784 MX1P20591 662 aa17.58■□□□□ 0.4
VPS35-210ENST00000568784 BCL11BQ9C0K0 894 aaPredicted RBP17.58■□□□□ 0.4
VPS35-210ENST00000568784 PALD1Q9ULE6 856 aa17.58■□□□□ 0.4
VPS35-210ENST00000568784 NRXN1Q9ULB1 1477 aa17.57■□□□□ 0.4
VPS35-210ENST00000568784 NCOA3Q9Y6Q9 1424 aa17.57■□□□□ 0.4
VPS35-210ENST00000568784 OFD1O75665 1012 aa17.57■□□□□ 0.4
VPS35-210ENST00000568784 MBD3O95983 291 aa17.57■□□□□ 0.4
VPS35-210ENST00000568784 OSCARQ8IYS5 282 aa17.57■□□□□ 0.4
VPS35-210ENST00000568784 PPP1R9BQ96SB3 815 aa17.57■□□□□ 0.4
VPS35-210ENST00000568784 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.56■□□□□ 0.4
VPS35-210ENST00000568784 ZNF853P0CG23 659 aa17.56■□□□□ 0.4
VPS35-210ENST00000568784 LRRC7Q96NW7 1537 aa17.56■□□□□ 0.4
VPS35-210ENST00000568784 ZNF445P59923 1031 aa17.56■□□□□ 0.4
VPS35-210ENST00000568784 LRSAM1Q6UWE0 723 aa17.56■□□□□ 0.4
VPS35-210ENST00000568784 CCDC39Q9UFE4 941 aa17.56■□□□□ 0.4
VPS35-210ENST00000568784 LRRFIP2Q9Y608 721 aaKnown RBP17.56■□□□□ 0.4
VPS35-210ENST00000568784 FAM135BQ49AJ0 1406 aa17.56■□□□□ 0.4
VPS35-210ENST00000568784 USP25Q9UHP3 1055 aa17.56■□□□□ 0.4
VPS35-210ENST00000568784 INO80Q9ULG1 1556 aaPredicted RBP17.56■□□□□ 0.4
VPS35-210ENST00000568784 ZFYVE9O95405 1425 aa17.55■□□□□ 0.4
VPS35-210ENST00000568784 VPS37CA5D8V6 355 aaPredicted RBP17.55■□□□□ 0.4
VPS35-210ENST00000568784 UBTFL1P0CB47 393 aaPredicted RBP17.54■□□□□ 0.4
VPS35-210ENST00000568784 ZDHHC9Q9Y397 364 aa17.54■□□□□ 0.4
VPS35-210ENST00000568784 SETBP1Q9Y6X0 1596 aa17.54■□□□□ 0.4
VPS35-210ENST00000568784 BRPF1P55201 1214 aaPredicted RBP17.54■□□□□ 0.4
VPS35-210ENST00000568784 ESYT1Q9BSJ8 1104 aa17.54■□□□□ 0.4
VPS35-210ENST00000568784 VWDEQ8N2E2 1590 aa17.53■□□□□ 0.4
VPS35-210ENST00000568784 GADD45BO75293 160 aaPredicted RBP17.53■□□□□ 0.4
VPS35-210ENST00000568784 CCT4P50991 539 aaKnown RBP17.53■□□□□ 0.4
VPS35-210ENST00000568784 RTL1A6NKG5 1358 aa17.53■□□□□ 0.4
VPS35-210ENST00000568784 PNMA6EA0A0J9YXQ4 647 aa17.53■□□□□ 0.4
VPS35-210ENST00000568784 DEPDC5O75140 1603 aa17.53■□□□□ 0.4
VPS35-210ENST00000568784 MROH1Q8NDA8 1641 aa17.53■□□□□ 0.4
VPS35-210ENST00000568784 SLC26A8Q96RN1 970 aa17.53■□□□□ 0.4
VPS35-210ENST00000568784 FAM177BA6PVY3 158 aa17.52■□□□□ 0.4
VPS35-210ENST00000568784 CWC27Q6UX04 472 aaKnown RBP17.52■□□□□ 0.4
VPS35-210ENST00000568784 PDCL3Q9H2J4 239 aa17.52■□□□□ 0.4
VPS35-210ENST00000568784 PRDM10Q9NQV6 1147 aa17.52■□□□□ 0.4
VPS35-210ENST00000568784 PTCH1Q13635 1447 aa17.52■□□□□ 0.4
VPS35-210ENST00000568784 C17orf53Q8N3J3 647 aaPredicted RBP17.52■□□□□ 0.4
VPS35-210ENST00000568784 ZKSCAN5Q9Y2L8 839 aa17.52■□□□□ 0.4
VPS35-210ENST00000568784 CPA1P15085 419 aa17.52■□□□□ 0.39
VPS35-210ENST00000568784 FAM69CQ0P6D2 419 aa17.52■□□□□ 0.39
VPS35-210ENST00000568784 SPC24Q8NBT2 197 aa17.52■□□□□ 0.39
VPS35-210ENST00000568784 TSC1Q92574 1164 aa17.52■□□□□ 0.39
VPS35-210ENST00000568784 PNPLA6Q8IY17 1366 aa17.52■□□□□ 0.39
VPS35-210ENST00000568784 GNAI3P08754 354 aa17.51■□□□□ 0.39
VPS35-210ENST00000568784 FLIIQ13045 1269 aa17.51■□□□□ 0.39
VPS35-210ENST00000568784 CHL1O00533 1208 aa17.51■□□□□ 0.39
VPS35-210ENST00000568784 PHF14O94880 888 aa17.51■□□□□ 0.39
VPS35-210ENST00000568784 TAOK2Q9UL54 1235 aa17.51■□□□□ 0.39
VPS35-210ENST00000568784 SPG7Q9UQ90 795 aa17.51■□□□□ 0.39
VPS35-210ENST00000568784 SMC3Q9UQE7 1217 aa17.51■□□□□ 0.39
VPS35-210ENST00000568784 MTHFSDQ2M296 383 aaKnown RBP17.51■□□□□ 0.39
VPS35-210ENST00000568784 ABCC3O15438 1527 aa17.51■□□□□ 0.39
VPS35-210ENST00000568784 NOL7Q9UMY1 257 aaKnown RBP17.5■□□□□ 0.39
VPS35-210ENST00000568784 HCLS1P14317 486 aaPredicted RBP17.5■□□□□ 0.39
VPS35-210ENST00000568784 USP48Q86UV5 1035 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms