RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 IL13P35225 146 aa13.32□□□□□ -0.28
CLK3-220ENST00000567992 CNGB1Q14028 1251 aaPredicted RBP13.32□□□□□ -0.28
CLK3-220ENST00000567992 TOGARAM1Q9Y4F4 1720 aa13.32□□□□□ -0.28
CLK3-220ENST00000567992 TRIM37O94972 964 aa13.31□□□□□ -0.28
CLK3-220ENST00000567992 PTF1AQ7RTS3 328 aa13.31□□□□□ -0.28
CLK3-220ENST00000567992 DEFB132Q7Z7B7 95 aa13.31□□□□□ -0.28
CLK3-220ENST00000567992 KDRP35968 1356 aa13.31□□□□□ -0.28
CLK3-220ENST00000567992 PLEKHG2Q9H7P9 1386 aa13.31□□□□□ -0.28
CLK3-220ENST00000567992 DDX10Q13206 875 aaKnown RBP13.3□□□□□ -0.28
CLK3-220ENST00000567992 NUP188Q5SRE5 1749 aa13.3□□□□□ -0.28
CLK3-220ENST00000567992 BTAF1O14981 1849 aa13.29□□□□□ -0.28
CLK3-220ENST00000567992 TATP17735 454 aaPredicted RBP13.29□□□□□ -0.28
CLK3-220ENST00000567992 PPP2R1AP30153 589 aa13.29□□□□□ -0.28
CLK3-220ENST00000567992 AEBP1Q8IUX7 1158 aa13.29□□□□□ -0.28
CLK3-220ENST00000567992 ZCRB1Q8TBF4 217 aaKnown RBP13.29□□□□□ -0.28
CLK3-220ENST00000567992 RAPGEF4Q8WZA2 1011 aa13.29□□□□□ -0.28
CLK3-220ENST00000567992 SF3B2Q13435 895 aaKnown RBP13.27□□□□□ -0.29
CLK3-220ENST00000567992 DDX54Q8TDD1 881 aaKnown RBP13.27□□□□□ -0.29
CLK3-220ENST00000567992 CYP27B1O15528 508 aa13.26□□□□□ -0.29
CLK3-220ENST00000567992 KCNQ2O43526 872 aa13.26□□□□□ -0.29
CLK3-220ENST00000567992 ITGB4P16144 1822 aa13.26□□□□□ -0.29
CLK3-220ENST00000567992 BAG6P46379 1132 aa13.26□□□□□ -0.29
CLK3-220ENST00000567992 EN1Q05925 392 aaPredicted RBP13.26□□□□□ -0.29
CLK3-220ENST00000567992 PCDH11XQ9BZA7 1347 aa13.26□□□□□ -0.29
CLK3-220ENST00000567992 PCDH11YQ9BZA8 1340 aa13.26□□□□□ -0.29
CLK3-220ENST00000567992 BCL11BQ9C0K0 894 aaPredicted RBP13.26□□□□□ -0.29
CLK3-220ENST00000567992 DIAPH1O60610 1272 aaKnown RBP13.25□□□□□ -0.29
CLK3-220ENST00000567992 CAMKK2Q96RR4 588 aa13.25□□□□□ -0.29
CLK3-220ENST00000567992 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.25□□□□□ -0.29
CLK3-220ENST00000567992 APBA3O96018 575 aa13.24□□□□□ -0.29
CLK3-220ENST00000567992 SULT6B1Q6IMI4 303 aa13.24□□□□□ -0.29
CLK3-220ENST00000567992 ACSBG1Q96GR2 724 aa13.24□□□□□ -0.29
CLK3-220ENST00000567992 LY75O60449 1722 aa13.24□□□□□ -0.29
CLK3-220ENST00000567992 ZNF316A6NFI3 1004 aaPredicted RBP13.23□□□□□ -0.29
CLK3-220ENST00000567992 EZH2Q15910 746 aaKnown RBP13.23□□□□□ -0.29
CLK3-220ENST00000567992 PAPPAQ13219 1627 aa13.23□□□□□ -0.29
CLK3-220ENST00000567992 NKX1-1Q15270 411 aaPredicted RBP13.22□□□□□ -0.29
CLK3-220ENST00000567992 SPG7Q9UQ90 795 aa13.22□□□□□ -0.29
CLK3-220ENST00000567992 VIRMAQ69YN4 1812 aaKnown RBP13.22□□□□□ -0.29
CLK3-220ENST00000567992 ADAMTS7Q9UKP4 1686 aa13.21□□□□□ -0.29
CLK3-220ENST00000567992 KAT6BQ8WYB5 2073 aa13.21□□□□□ -0.29
CLK3-220ENST00000567992 PLSCR1O15162 318 aa13.21□□□□□ -0.29
CLK3-220ENST00000567992 HMOX1P09601 288 aa13.21□□□□□ -0.29
CLK3-220ENST00000567992 PHKG2P15735 406 aa13.21□□□□□ -0.29
CLK3-220ENST00000567992 RALBP1Q15311 655 aa13.21□□□□□ -0.29
CLK3-220ENST00000567992 KDM6AO15550 1401 aaPredicted RBP13.21□□□□□ -0.3
CLK3-220ENST00000567992 SCN11AQ9UI33 1791 aa13.2□□□□□ -0.3
CLK3-220ENST00000567992 MSH5O43196 834 aa13.2□□□□□ -0.3
CLK3-220ENST00000567992 PROM2Q8N271 834 aa13.2□□□□□ -0.3
CLK3-220ENST00000567992 PRIM1P49642 420 aaKnown RBP13.19□□□□□ -0.3
CLK3-220ENST00000567992 IFNL2Q8IZJ0 200 aa13.19□□□□□ -0.3
CLK3-220ENST00000567992 CFAP53Q96M91 514 aa13.19□□□□□ -0.3
CLK3-220ENST00000567992 AMOTQ4VCS5 1084 aa13.18□□□□□ -0.3
CLK3-220ENST00000567992 PLEKHO1Q53GL0 409 aaPredicted RBP13.18□□□□□ -0.3
CLK3-220ENST00000567992 MYBBP1AQ9BQG0 1328 aaKnown RBP13.17□□□□□ -0.3
CLK3-220ENST00000567992 SRCAPQ6ZRS2 3230 aa13.17□□□□□ -0.3
CLK3-220ENST00000567992 U2SURPO15042 1029 aaKnown RBP13.17□□□□□ -0.3
CLK3-220ENST00000567992 ZNF530Q6P9A1 599 aaPredicted RBP13.17□□□□□ -0.3
CLK3-220ENST00000567992 RSPH6AQ9H0K4 717 aa13.17□□□□□ -0.3
CLK3-220ENST00000567992 PRKRIP1Q9H875 184 aaPredicted RBP13.17□□□□□ -0.3
CLK3-220ENST00000567992 MRC1P22897 1456 aa13.16□□□□□ -0.3
CLK3-220ENST00000567992 SYTL4Q96C24 671 aaPredicted RBP13.16□□□□□ -0.3
CLK3-220ENST00000567992 TXNRD1Q16881 649 aa13.15□□□□□ -0.3
CLK3-220ENST00000567992 MTHFSDQ2M296 383 aaKnown RBP13.15□□□□□ -0.3
CLK3-220ENST00000567992 TAF1LQ8IZX4 1826 aa13.15□□□□□ -0.3
CLK3-220ENST00000567992 C5P01031 1676 aa13.15□□□□□ -0.31
CLK3-220ENST00000567992 SIPA1L3O60292 1781 aaPredicted RBP13.15□□□□□ -0.31
CLK3-220ENST00000567992 CASZ1Q86V15 1759 aa13.15□□□□□ -0.31
CLK3-220ENST00000567992 TUBGCP6Q96RT7 1819 aa13.14□□□□□ -0.31
CLK3-220ENST00000567992 ANO8Q9HCE9 1232 aaPredicted RBP13.14□□□□□ -0.31
CLK3-220ENST00000567992 HSP90AB1P08238 724 aaKnown RBP13.13□□□□□ -0.31
CLK3-220ENST00000567992 U2AF1L5P0DN76 240 aaPredicted RBP13.13□□□□□ -0.31
CLK3-220ENST00000567992 PRKAR2BP31323 418 aa13.13□□□□□ -0.31
CLK3-220ENST00000567992 U2AF1Q01081 240 aaKnown RBP eCLIP13.13□□□□□ -0.31
CLK3-220ENST00000567992 MPRIPQ6WCQ1 1025 aa13.13□□□□□ -0.31
CLK3-220ENST00000567992 PIGBQ92521 554 aa13.13□□□□□ -0.31
CLK3-220ENST00000567992 DCAF5Q96JK2 942 aa13.13□□□□□ -0.31
CLK3-220ENST00000567992 PHACTR3Q96KR7 559 aa13.13□□□□□ -0.31
CLK3-220ENST00000567992 LRRC4BQ9NT99 713 aa13.13□□□□□ -0.31
CLK3-220ENST00000567992 NUDCQ9Y266 331 aa13.13□□□□□ -0.31
CLK3-220ENST00000567992 QSER1Q2KHR3 1735 aa13.13□□□□□ -0.31
CLK3-220ENST00000567992 ZNF831Q5JPB2 1677 aa13.12□□□□□ -0.31
CLK3-220ENST00000567992 DLG5Q8TDM6 1919 aa13.12□□□□□ -0.31
CLK3-220ENST00000567992 PALLDQ8WX93 1383 aa13.12□□□□□ -0.31
CLK3-220ENST00000567992 AKAP4Q5JQC9 854 aa13.12□□□□□ -0.31
CLK3-220ENST00000567992 C1orf141Q5JVX7 400 aa13.12□□□□□ -0.31
CLK3-220ENST00000567992 CICQ96RK0 1608 aaPredicted RBP13.11□□□□□ -0.31
CLK3-220ENST00000567992 PSDA5PKW4 1024 aaPredicted RBP13.11□□□□□ -0.31
CLK3-220ENST00000567992 ERVV-2B6SEH9 535 aa13.11□□□□□ -0.31
CLK3-220ENST00000567992 FCHSD2O94868 740 aa13.11□□□□□ -0.31
CLK3-220ENST00000567992 TMOD3Q9NYL9 352 aa13.11□□□□□ -0.31
CLK3-220ENST00000567992 MAP3K5Q99683 1374 aa13.1□□□□□ -0.31
CLK3-220ENST00000567992 UBR2Q8IWV8 1755 aa13.1□□□□□ -0.31
CLK3-220ENST00000567992 R3HDM1Q15032 1099 aaKnown RBP13.1□□□□□ -0.31
CLK3-220ENST00000567992 LGR6Q9HBX8 967 aa13.1□□□□□ -0.31
CLK3-220ENST00000567992 COL5A3P25940 1745 aaPredicted RBP13.1□□□□□ -0.31
CLK3-220ENST00000567992 LRP5O75197 1615 aa13.1□□□□□ -0.31
CLK3-220ENST00000567992 C4BP0C0L5 1744 aa13.09□□□□□ -0.31
CLK3-220ENST00000567992 KCNQ4P56696 695 aa13.09□□□□□ -0.31
CLK3-220ENST00000567992 TJP1Q07157 1748 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms