RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	PPM1G	O15355	546 aa	Predicted RBP	9.52	□□□□□ -0.89
SF3B3-209	ENST00000567635	PROM2	Q8N271	834 aa		9.52	□□□□□ -0.89
SF3B3-209	ENST00000567635	ZCRB1	Q8TBF4	217 aa	Known RBP	9.52	□□□□□ -0.89
SF3B3-209	ENST00000567635	ACSBG1	Q96GR2	724 aa		9.52	□□□□□ -0.89
SF3B3-209	ENST00000567635	FLT4	P35916	1363 aa		9.51	□□□□□ -0.89
SF3B3-209	ENST00000567635	SMG6	Q86US8	1419 aa	Known RBP	9.51	□□□□□ -0.89
SF3B3-209	ENST00000567635	RAPGEF4	Q8WZA2	1011 aa		9.51	□□□□□ -0.89
SF3B3-209	ENST00000567635	EMILIN1	Q9Y6C2	1016 aa		9.51	□□□□□ -0.89
SF3B3-209	ENST00000567635	BTAF1	O14981	1849 aa		9.51	□□□□□ -0.89
SF3B3-209	ENST00000567635	ANKRD26	Q9UPS8	1709 aa		9.51	□□□□□ -0.89
SF3B3-209	ENST00000567635	USHBP1	Q8N6Y0	703 aa		9.5	□□□□□ -0.89
SF3B3-209	ENST00000567635	POLK	Q9UBT6	870 aa		9.5	□□□□□ -0.89
SF3B3-209	ENST00000567635	WASHC2A	Q641Q2	1341 aa		9.5	□□□□□ -0.89
SF3B3-209	ENST00000567635	LRP5	O75197	1615 aa		9.49	□□□□□ -0.89
SF3B3-209	ENST00000567635	NHS	Q6T4R5	1651 aa		9.49	□□□□□ -0.89
SF3B3-209	ENST00000567635	TAT	P17735	454 aa	Predicted RBP	9.49	□□□□□ -0.89
SF3B3-209	ENST00000567635	TNNT2	P45379	298 aa	Predicted RBP	9.49	□□□□□ -0.89
SF3B3-209	ENST00000567635	TXNRD1	Q16881	649 aa		9.49	□□□□□ -0.89
SF3B3-209	ENST00000567635	KNSTRN	Q9Y448	316 aa		9.49	□□□□□ -0.89
SF3B3-209	ENST00000567635	PRIM1	P49642	420 aa	Known RBP	9.48	□□□□□ -0.89
SF3B3-209	ENST00000567635	SHANK3	Q9BYB0	1731 aa		9.48	□□□□□ -0.89
SF3B3-209	ENST00000567635	MORC1	Q86VD1	984 aa		9.47	□□□□□ -0.89
SF3B3-209	ENST00000567635	STK32B	Q9NY57	414 aa		9.47	□□□□□ -0.89
SF3B3-209	ENST00000567635	SRCAP	Q6ZRS2	3230 aa		9.46	□□□□□ -0.89
SF3B3-209	ENST00000567635	MEGF6	O75095	1541 aa		9.46	□□□□□ -0.89
SF3B3-209	ENST00000567635	SYTL4	Q96C24	671 aa	Predicted RBP	9.46	□□□□□ -0.9
SF3B3-209	ENST00000567635	EYA1	Q99502	592 aa		9.46	□□□□□ -0.9
SF3B3-209	ENST00000567635	KIF7	Q2M1P5	1343 aa		9.46	□□□□□ -0.9
SF3B3-209	ENST00000567635	NSD2	O96028	1365 aa		9.46	□□□□□ -0.9
SF3B3-209	ENST00000567635	ITGB4	P16144	1822 aa		9.45	□□□□□ -0.9
SF3B3-209	ENST00000567635	SLC15A2	Q16348	729 aa		9.45	□□□□□ -0.9
SF3B3-209	ENST00000567635	SLC27A3	Q5K4L6	730 aa		9.45	□□□□□ -0.9
SF3B3-209	ENST00000567635	SPON1	Q9HCB6	807 aa		9.45	□□□□□ -0.9
SF3B3-209	ENST00000567635	ANO8	Q9HCE9	1232 aa	Predicted RBP	9.45	□□□□□ -0.9
SF3B3-209	ENST00000567635	SPG7	Q9UQ90	795 aa		9.45	□□□□□ -0.9
SF3B3-209	ENST00000567635	PCDH11X	Q9BZA7	1347 aa		9.45	□□□□□ -0.9
SF3B3-209	ENST00000567635	PCDH11Y	Q9BZA8	1340 aa		9.45	□□□□□ -0.9
SF3B3-209	ENST00000567635	DOT1L	Q8TEK3	1739 aa		9.45	□□□□□ -0.9
SF3B3-209	ENST00000567635	CYP27B1	O15528	508 aa		9.44	□□□□□ -0.9
SF3B3-209	ENST00000567635	EIF4A2	Q14240	407 aa	Known RBP	9.44	□□□□□ -0.9
SF3B3-209	ENST00000567635	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	9.44	□□□□□ -0.9	3e-16	■□□□□ 10.4
SF3B3-209	ENST00000567635	NCAPD2	Q15021	1401 aa		9.43	□□□□□ -0.9
SF3B3-209	ENST00000567635	PER1	O15534	1290 aa	Predicted RBP	9.43	□□□□□ -0.9
SF3B3-209	ENST00000567635	AMER1	Q5JTC6	1135 aa	Predicted RBP	9.43	□□□□□ -0.9
SF3B3-209	ENST00000567635	PDGFD	Q9GZP0	370 aa	Predicted RBP	9.43	□□□□□ -0.9
SF3B3-209	ENST00000567635	LRRC4B	Q9NT99	713 aa		9.43	□□□□□ -0.9
SF3B3-209	ENST00000567635	LY75	O60449	1722 aa		9.42	□□□□□ -0.9
SF3B3-209	ENST00000567635	PKD1L3	Q7Z443	1732 aa		9.42	□□□□□ -0.9
SF3B3-209	ENST00000567635	NKX1-1	Q15270	411 aa	Predicted RBP	9.42	□□□□□ -0.9
SF3B3-209	ENST00000567635	PPP1R1B	Q9UD71	204 aa	Predicted RBP	9.42	□□□□□ -0.9
SF3B3-209	ENST00000567635	CASZ1	Q86V15	1759 aa		9.42	□□□□□ -0.9
SF3B3-209	ENST00000567635	ZBTB7A	O95365	584 aa		9.41	□□□□□ -0.9
SF3B3-209	ENST00000567635	KCNQ4	P56696	695 aa		9.41	□□□□□ -0.9
SF3B3-209	ENST00000567635	MPRIP	Q6WCQ1	1025 aa		9.41	□□□□□ -0.9
SF3B3-209	ENST00000567635	ATF5	Q9Y2D1	282 aa	Predicted RBP	9.41	□□□□□ -0.9
SF3B3-209	ENST00000567635	IGSF1	Q8N6C5	1336 aa		9.4	□□□□□ -0.9
SF3B3-209	ENST00000567635	DCAF8L1	A6NGE4	600 aa		9.4	□□□□□ -0.9
SF3B3-209	ENST00000567635	HMGB2	P26583	209 aa	Known RBP	9.4	□□□□□ -0.9
SF3B3-209	ENST00000567635	PLEKHO1	Q53GL0	409 aa	Predicted RBP	9.4	□□□□□ -0.9
SF3B3-209	ENST00000567635	IFNL2	Q8IZJ0	200 aa		9.4	□□□□□ -0.9
SF3B3-209	ENST00000567635	AKT1S1	Q96B36	256 aa		9.4	□□□□□ -0.9
SF3B3-209	ENST00000567635	CCNL1	Q9UK58	526 aa	Predicted RBP	9.4	□□□□□ -0.9
SF3B3-209	ENST00000567635	TAF1L	Q8IZX4	1826 aa		9.4	□□□□□ -0.91
SF3B3-209	ENST00000567635	QSER1	Q2KHR3	1735 aa		9.39	□□□□□ -0.91
SF3B3-209	ENST00000567635	PAPPA	Q13219	1627 aa		9.39	□□□□□ -0.91
SF3B3-209	ENST00000567635	PHKG2	P15735	406 aa		9.39	□□□□□ -0.91
SF3B3-209	ENST00000567635	MTHFS	P49914	203 aa		9.39	□□□□□ -0.91
SF3B3-209	ENST00000567635	ZNF827	Q17R98	1081 aa		9.39	□□□□□ -0.91
SF3B3-209	ENST00000567635	CC2D1B	Q5T0F9	858 aa	Known RBP	9.39	□□□□□ -0.91
SF3B3-209	ENST00000567635	PIGB	Q92521	554 aa		9.39	□□□□□ -0.91
SF3B3-209	ENST00000567635	SMARCC1	Q92922	1105 aa	Predicted RBP	9.39	□□□□□ -0.91
SF3B3-209	ENST00000567635	MTFR1L	Q9H019	292 aa		9.39	□□□□□ -0.91
SF3B3-209	ENST00000567635	TFCP2L1	Q9NZI6	479 aa		9.39	□□□□□ -0.91
SF3B3-209	ENST00000567635	TUBGCP6	Q96RT7	1819 aa		9.38	□□□□□ -0.91
SF3B3-209	ENST00000567635	IL13	P35225	146 aa		9.38	□□□□□ -0.91
SF3B3-209	ENST00000567635	PTGER2	P43116	358 aa		9.38	□□□□□ -0.91
SF3B3-209	ENST00000567635	AMOT	Q4VCS5	1084 aa		9.38	□□□□□ -0.91
SF3B3-209	ENST00000567635	PLEKHG2	Q9H7P9	1386 aa		9.37	□□□□□ -0.91
SF3B3-209	ENST00000567635	TOGARAM1	Q9Y4F4	1720 aa		9.37	□□□□□ -0.91
SF3B3-209	ENST00000567635	ERVV-2	B6SEH9	535 aa		9.37	□□□□□ -0.91
SF3B3-209	ENST00000567635	HSP90AB1	P08238	724 aa	Known RBP	9.37	□□□□□ -0.91
SF3B3-209	ENST00000567635	SULT6B1	Q6IMI4	303 aa		9.37	□□□□□ -0.91
SF3B3-209	ENST00000567635	SLC16A10	Q8TF71	515 aa		9.37	□□□□□ -0.91
SF3B3-209	ENST00000567635	TMOD3	Q9NYL9	352 aa		9.37	□□□□□ -0.91
SF3B3-209	ENST00000567635	PALLD	Q8WX93	1383 aa		9.37	□□□□□ -0.91
SF3B3-209	ENST00000567635	NPC1L1	Q9UHC9	1359 aa		9.37	□□□□□ -0.91
SF3B3-209	ENST00000567635	CNGB1	Q14028	1251 aa	Predicted RBP	9.36	□□□□□ -0.91
SF3B3-209	ENST00000567635	ZNF530	Q6P9A1	599 aa	Predicted RBP	9.36	□□□□□ -0.91
SF3B3-209	ENST00000567635	AEBP1	Q8IUX7	1158 aa		9.36	□□□□□ -0.91
SF3B3-209	ENST00000567635	DCAF5	Q96JK2	942 aa		9.36	□□□□□ -0.91
SF3B3-209	ENST00000567635	ASAP1	Q9ULH1	1129 aa		9.36	□□□□□ -0.91
SF3B3-209	ENST00000567635	C5	P01031	1676 aa		9.36	□□□□□ -0.91
SF3B3-209	ENST00000567635	VIRMA	Q69YN4	1812 aa	Known RBP	9.35	□□□□□ -0.91
SF3B3-209	ENST00000567635	PNPLA7	Q6ZV29	1317 aa		9.35	□□□□□ -0.91
SF3B3-209	ENST00000567635	DIAPH1	O60610	1272 aa	Known RBP	9.35	□□□□□ -0.91
SF3B3-209	ENST00000567635	C1orf141	Q5JVX7	400 aa		9.35	□□□□□ -0.91
SF3B3-209	ENST00000567635	SGIP1	Q9BQI5	828 aa		9.35	□□□□□ -0.91
SF3B3-209	ENST00000567635	LOC102724428	A0A0B4J2F2	783 aa		9.34	□□□□□ -0.91
SF3B3-209	ENST00000567635	SIK1	P57059	783 aa		9.34	□□□□□ -0.91
SF3B3-209	ENST00000567635	CABP4	P57796	275 aa		9.34	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms