RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 PRIM1P49642 420 aaKnown RBP24.28■■□□□ 1.48
CLK3-217ENST00000566126 DDX54Q8TDD1 881 aaKnown RBP24.28■■□□□ 1.48
CLK3-217ENST00000566126 KLRG1Q96E93 195 aa24.28■■□□□ 1.48
CLK3-217ENST00000566126 LTN1O94822 1766 aa24.28■■□□□ 1.48
CLK3-217ENST00000566126 IGSF1Q8N6C5 1336 aa24.28■■□□□ 1.48
CLK3-217ENST00000566126 HTRA3P83110 453 aa24.27■■□□□ 1.48
CLK3-217ENST00000566126 SYTL4Q96C24 671 aaPredicted RBP24.27■■□□□ 1.48
CLK3-217ENST00000566126 TTC21AQ8NDW8 1320 aa24.27■■□□□ 1.48
CLK3-217ENST00000566126 CICQ96RK0 1608 aaPredicted RBP24.27■■□□□ 1.48
CLK3-217ENST00000566126 ANKRD36BQ8N2N9 1353 aa24.27■■□□□ 1.48
CLK3-217ENST00000566126 ZNF692Q9BU19 519 aaPredicted RBP24.25■■□□□ 1.47
CLK3-217ENST00000566126 ANKRD24Q8TF21 1146 aa24.24■■□□□ 1.47
CLK3-217ENST00000566126 C5P01031 1676 aa24.23■■□□□ 1.47
CLK3-217ENST00000566126 USP54Q70EL1 1684 aa24.21■■□□□ 1.47
CLK3-217ENST00000566126 NMRK2Q9NPI5 230 aa24.2■■□□□ 1.46
CLK3-217ENST00000566126 TAF1LQ8IZX4 1826 aa24.19■■□□□ 1.46
CLK3-217ENST00000566126 SLC34A2O95436 690 aa24.18■■□□□ 1.46
CLK3-217ENST00000566126 USP31Q70CQ4 1352 aa24.17■■□□□ 1.46
CLK3-217ENST00000566126 RAB3GAP2Q9H2M9 1393 aa24.17■■□□□ 1.46
CLK3-217ENST00000566126 RBM46Q8TBY0 533 aaKnown RBP24.17■■□□□ 1.46
CLK3-217ENST00000566126 MON2Q7Z3U7 1717 aa24.17■■□□□ 1.46
CLK3-217ENST00000566126 TOGARAM1Q9Y4F4 1720 aa24.15■■□□□ 1.46
CLK3-217ENST00000566126 FLAD1Q8NFF5 587 aa24.15■■□□□ 1.46
CLK3-217ENST00000566126 KTN1Q86UP2 1357 aaKnown RBP24.15■■□□□ 1.46
CLK3-217ENST00000566126 USP47Q96K76 1375 aa24.15■■□□□ 1.46
CLK3-217ENST00000566126 EVC2Q86UK5 1308 aa24.13■■□□□ 1.45
CLK3-217ENST00000566126 AMIGO3Q86WK7 504 aa24.13■■□□□ 1.45
CLK3-217ENST00000566126 FAM208AQ9UK61 1670 aaKnown RBP24.13■■□□□ 1.45
CLK3-217ENST00000566126 UBR3Q6ZT12 1888 aa24.11■■□□□ 1.45
CLK3-217ENST00000566126 KIAA1551Q9HCM1 1747 aa24.1■■□□□ 1.45
CLK3-217ENST00000566126 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.1■■□□□ 1.45
CLK3-217ENST00000566126 C4BP0C0L5 1744 aa24.1■■□□□ 1.45
CLK3-217ENST00000566126 NME9Q86XW9 330 aa24.09■■□□□ 1.45
CLK3-217ENST00000566126 FSTL1Q12841 308 aa24.08■■□□□ 1.45
CLK3-217ENST00000566126 SMIM5Q71RC9 77 aa24.07■■□□□ 1.44
CLK3-217ENST00000566126 ZCRB1Q8TBF4 217 aaKnown RBP24.07■■□□□ 1.44
CLK3-217ENST00000566126 RGPD2P0DJD1 1756 aa24.06■■□□□ 1.44
CLK3-217ENST00000566126 N4BP2Q86UW6 1770 aaPredicted RBP24.06■■□□□ 1.44
CLK3-217ENST00000566126 KIF13BQ9NQT8 1826 aa24.06■■□□□ 1.44
CLK3-217ENST00000566126 PXDNLA1KZ92 1463 aa24.06■■□□□ 1.44
CLK3-217ENST00000566126 MEGF6O75095 1541 aa24.05■■□□□ 1.44
CLK3-217ENST00000566126 LTV1Q96GA3 475 aaPredicted RBP24.05■■□□□ 1.44
CLK3-217ENST00000566126 C16orf71Q8IYS4 520 aaPredicted RBP24.04■■□□□ 1.44
CLK3-217ENST00000566126 IP6K1Q92551 441 aa24.04■■□□□ 1.44
CLK3-217ENST00000566126 SBNO2Q9Y2G9 1366 aa24.03■■□□□ 1.44
CLK3-217ENST00000566126 HSPA1AP0DMV8 641 aaKnown RBP24.03■■□□□ 1.44
CLK3-217ENST00000566126 HSPA1BP0DMV9 641 aaKnown RBP24.03■■□□□ 1.44
CLK3-217ENST00000566126 PALLDQ8WX93 1383 aa24.03■■□□□ 1.44
CLK3-217ENST00000566126 PHF14O94880 888 aa24.02■■□□□ 1.44
CLK3-217ENST00000566126 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.01■■□□□ 1.43
CLK3-217ENST00000566126 AK7Q96M32 723 aa24.01■■□□□ 1.43
CLK3-217ENST00000566126 CD163L1Q9NR16 1453 aa24■■□□□ 1.43
CLK3-217ENST00000566126 ARHGAP27Q6ZUM4 889 aa24■■□□□ 1.43
CLK3-217ENST00000566126 BCS1LQ9Y276 419 aa24■■□□□ 1.43
CLK3-217ENST00000566126 PKD1L3Q7Z443 1732 aa23.99■■□□□ 1.43
CLK3-217ENST00000566126 HMGB2P26583 209 aaKnown RBP23.99■■□□□ 1.43
CLK3-217ENST00000566126 KCPQ6ZWJ8 1503 aa23.99■■□□□ 1.43
CLK3-217ENST00000566126 BRCA1P38398 1863 aaKnown RBP23.98■■□□□ 1.43
CLK3-217ENST00000566126 C10orf71Q711Q0 1435 aa23.97■■□□□ 1.43
CLK3-217ENST00000566126 C9orf131Q5VYM1 1079 aa23.96■■□□□ 1.43
CLK3-217ENST00000566126 NSD3Q9BZ95 1437 aa23.95■■□□□ 1.42
CLK3-217ENST00000566126 PLEKHG2Q9H7P9 1386 aa23.95■■□□□ 1.42
CLK3-217ENST00000566126 A0A0G2JLW4 131 aa23.95■■□□□ 1.42
CLK3-217ENST00000566126 TGFB2P61812 414 aa23.95■■□□□ 1.42
CLK3-217ENST00000566126 ITGB4P16144 1822 aa23.94■■□□□ 1.42
CLK3-217ENST00000566126 SSFA2P28290 1259 aa23.94■■□□□ 1.42
CLK3-217ENST00000566126 TNRC6CQ9HCJ0 1690 aaKnown RBP23.94■■□□□ 1.42
CLK3-217ENST00000566126 RRAGCQ9HB90 399 aa23.93■■□□□ 1.42
CLK3-217ENST00000566126 MAP2P11137 1827 aaKnown RBP23.93■■□□□ 1.42
CLK3-217ENST00000566126 ARFGEF1Q9Y6D6 1849 aa23.93■■□□□ 1.42
CLK3-217ENST00000566126 MMP10P09238 476 aa23.92■■□□□ 1.42
CLK3-217ENST00000566126 MPRIPQ6WCQ1 1025 aa23.92■■□□□ 1.42
CLK3-217ENST00000566126 KDM2BQ8NHM5 1336 aa23.91■■□□□ 1.42
CLK3-217ENST00000566126 HOXC9P31274 260 aa23.91■■□□□ 1.42
CLK3-217ENST00000566126 SMC1BQ8NDV3 1235 aa23.9■■□□□ 1.42
CLK3-217ENST00000566126 EDC4Q6P2E9 1401 aaKnown RBP23.9■■□□□ 1.42
CLK3-217ENST00000566126 FCHSD2O94868 740 aa23.89■■□□□ 1.41
CLK3-217ENST00000566126 LINC00116Q8NCU8 138 aa23.89■■□□□ 1.41
CLK3-217ENST00000566126 MAP3K19Q56UN5 1328 aa23.88■■□□□ 1.41
CLK3-217ENST00000566126 DPEP1P16444 411 aa23.88■■□□□ 1.41
CLK3-217ENST00000566126 SMARCC1Q92922 1105 aaPredicted RBP23.88■■□□□ 1.41
CLK3-217ENST00000566126 CGNL1Q0VF96 1302 aa23.87■■□□□ 1.41
CLK3-217ENST00000566126 NBPF6Q5VWK0 638 aa23.87■■□□□ 1.41
CLK3-217ENST00000566126 NBPF4Q96M43 638 aa23.87■■□□□ 1.41
CLK3-217ENST00000566126 SBF1O95248 1867 aa23.87■■□□□ 1.41
CLK3-217ENST00000566126 USHBP1Q8N6Y0 703 aa23.86■■□□□ 1.41
CLK3-217ENST00000566126 KCNA3P22001 575 aa23.84■■□□□ 1.41
CLK3-217ENST00000566126 FBLN1P23142 703 aa23.84■■□□□ 1.41
CLK3-217ENST00000566126 GNPATO15228 680 aa23.83■■□□□ 1.41
CLK3-217ENST00000566126 HDGFL2Q7Z4V5 671 aaPredicted RBP23.83■■□□□ 1.41
CLK3-217ENST00000566126 SLC12A5Q9H2X9 1139 aa23.83■■□□□ 1.41
CLK3-217ENST00000566126 RNF181Q9P0P0 153 aa23.83■■□□□ 1.41
CLK3-217ENST00000566126 PCDH10Q9P2E7 1040 aa23.83■■□□□ 1.41
CLK3-217ENST00000566126 PCDH11XQ9BZA7 1347 aa23.83■■□□□ 1.4
CLK3-217ENST00000566126 PCDH11YQ9BZA8 1340 aa23.83■■□□□ 1.4
CLK3-217ENST00000566126 C4AP0C0L4 1744 aa23.82■■□□□ 1.4
CLK3-217ENST00000566126 AMPHP49418 695 aa23.82■■□□□ 1.4
CLK3-217ENST00000566126 TMC1Q8TDI8 760 aa23.82■■□□□ 1.4
CLK3-217ENST00000566126 RAPGEF4Q8WZA2 1011 aa23.82■■□□□ 1.4
CLK3-217ENST00000566126 PIGBQ92521 554 aa23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms