RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 IL2RBP14784 551 aa13.48□□□□□ -0.25
CLN3-220ENST00000566040 MYT1Q01538 1121 aa13.48□□□□□ -0.25
CLN3-220ENST00000566040 DDB1Q16531 1140 aa13.47□□□□□ -0.25
CLN3-220ENST00000566040 TUBGCP6Q96RT7 1819 aa13.47□□□□□ -0.25
CLN3-220ENST00000566040 PPM1GO15355 546 aaPredicted RBP13.46□□□□□ -0.25
CLN3-220ENST00000566040 IL13P35225 146 aa13.46□□□□□ -0.25
CLN3-220ENST00000566040 CDCA7Q9BWT1 371 aaPredicted RBP13.46□□□□□ -0.25
CLN3-220ENST00000566040 MTHFSP49914 203 aa13.45□□□□□ -0.26
CLN3-220ENST00000566040 DEFB132Q7Z7B7 95 aa13.45□□□□□ -0.26
CLN3-220ENST00000566040 AEBP1Q8IUX7 1158 aa13.45□□□□□ -0.26
CLN3-220ENST00000566040 TAF1LQ8IZX4 1826 aa13.45□□□□□ -0.26
CLN3-220ENST00000566040 SIPA1L3O60292 1781 aaPredicted RBP13.45□□□□□ -0.26
CLN3-220ENST00000566040 DLG5Q8TDM6 1919 aa13.45□□□□□ -0.26
CLN3-220ENST00000566040 KAT6BQ8WYB5 2073 aa13.44□□□□□ -0.26
CLN3-220ENST00000566040 CYP27B1O15528 508 aa13.43□□□□□ -0.26
CLN3-220ENST00000566040 PPP2R1AP30153 589 aa13.43□□□□□ -0.26
CLN3-220ENST00000566040 DDX10Q13206 875 aaKnown RBP13.43□□□□□ -0.26
CLN3-220ENST00000566040 FAM196AQ6ZSG2 479 aa13.43□□□□□ -0.26
CLN3-220ENST00000566040 PLEKHG2Q9H7P9 1386 aa13.43□□□□□ -0.26
CLN3-220ENST00000566040 TRIM37O94972 964 aa13.42□□□□□ -0.26
CLN3-220ENST00000566040 PDE3BQ13370 1112 aa13.42□□□□□ -0.26
CLN3-220ENST00000566040 KDM6AO15550 1401 aaPredicted RBP13.41□□□□□ -0.26
CLN3-220ENST00000566040 CASZ1Q86V15 1759 aa13.41□□□□□ -0.26
CLN3-220ENST00000566040 EXOC5O00471 708 aa13.41□□□□□ -0.26
CLN3-220ENST00000566040 KCNQ2O43526 872 aa13.41□□□□□ -0.26
CLN3-220ENST00000566040 CNGB1Q14028 1251 aaPredicted RBP13.41□□□□□ -0.26
CLN3-220ENST00000566040 QSER1Q2KHR3 1735 aa13.4□□□□□ -0.26
CLN3-220ENST00000566040 CAMKK2Q96RR4 588 aa13.4□□□□□ -0.26
CLN3-220ENST00000566040 CCDC125Q86Z20 511 aa13.39□□□□□ -0.27
CLN3-220ENST00000566040 ZCRB1Q8TBF4 217 aaKnown RBP13.39□□□□□ -0.27
CLN3-220ENST00000566040 C5P01031 1676 aa13.39□□□□□ -0.27
CLN3-220ENST00000566040 CICQ96RK0 1608 aaPredicted RBP13.39□□□□□ -0.27
CLN3-220ENST00000566040 UBR2Q8IWV8 1755 aa13.38□□□□□ -0.27
CLN3-220ENST00000566040 MRC1P22897 1456 aa13.38□□□□□ -0.27
CLN3-220ENST00000566040 COL5A3P25940 1745 aaPredicted RBP13.38□□□□□ -0.27
CLN3-220ENST00000566040 ZNF831Q5JPB2 1677 aa13.37□□□□□ -0.27
CLN3-220ENST00000566040 TATP17735 454 aaPredicted RBP13.37□□□□□ -0.27
CLN3-220ENST00000566040 EN1Q05925 392 aaPredicted RBP13.37□□□□□ -0.27
CLN3-220ENST00000566040 PROM2Q8N271 834 aa13.37□□□□□ -0.27
CLN3-220ENST00000566040 ACSBG1Q96GR2 724 aa13.37□□□□□ -0.27
CLN3-220ENST00000566040 TJP1Q07157 1748 aa13.36□□□□□ -0.27
CLN3-220ENST00000566040 NKX1-1Q15270 411 aaPredicted RBP13.36□□□□□ -0.27
CLN3-220ENST00000566040 EZH2Q15910 746 aaKnown RBP13.36□□□□□ -0.27
CLN3-220ENST00000566040 DDX54Q8TDD1 881 aaKnown RBP13.36□□□□□ -0.27
CLN3-220ENST00000566040 RAPGEF4Q8WZA2 1011 aa13.36□□□□□ -0.27
CLN3-220ENST00000566040 BCL11BQ9C0K0 894 aaPredicted RBP13.36□□□□□ -0.27
CLN3-220ENST00000566040 PCDH11XQ9BZA7 1347 aa13.36□□□□□ -0.27
CLN3-220ENST00000566040 PCDH11YQ9BZA8 1340 aa13.36□□□□□ -0.27
CLN3-220ENST00000566040 SRCAPQ6ZRS2 3230 aa13.35□□□□□ -0.27
CLN3-220ENST00000566040 ZNF316A6NFI3 1004 aaPredicted RBP13.35□□□□□ -0.27
CLN3-220ENST00000566040 SULT6B1Q6IMI4 303 aa13.35□□□□□ -0.27
CLN3-220ENST00000566040 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.35□□□□□ -0.27
CLN3-220ENST00000566040 COL24A1Q17RW2 1714 aa13.35□□□□□ -0.27
CLN3-220ENST00000566040 DIAPH1O60610 1272 aaKnown RBP13.34□□□□□ -0.27
CLN3-220ENST00000566040 PHKG2P15735 406 aa13.34□□□□□ -0.27
CLN3-220ENST00000566040 UBR3Q6ZT12 1888 aa13.33□□□□□ -0.27
CLN3-220ENST00000566040 APBA3O96018 575 aa13.33□□□□□ -0.28
CLN3-220ENST00000566040 HMOX1P09601 288 aa13.33□□□□□ -0.28
CLN3-220ENST00000566040 RSPH6AQ9H0K4 717 aa13.33□□□□□ -0.28
CLN3-220ENST00000566040 PLSCR1O15162 318 aa13.32□□□□□ -0.28
CLN3-220ENST00000566040 BAG6P46379 1132 aa13.32□□□□□ -0.28
CLN3-220ENST00000566040 PRKRIP1Q9H875 184 aaPredicted RBP13.32□□□□□ -0.28
CLN3-220ENST00000566040 LRP5O75197 1615 aa13.31□□□□□ -0.28
CLN3-220ENST00000566040 MYH14Q7Z406 1995 aaKnown RBP13.31□□□□□ -0.28
CLN3-220ENST00000566040 PRIM1P49642 420 aaKnown RBP13.31□□□□□ -0.28
CLN3-220ENST00000566040 ANO8Q9HCE9 1232 aaPredicted RBP13.31□□□□□ -0.28
CLN3-220ENST00000566040 C4BP0C0L5 1744 aa13.3□□□□□ -0.28
CLN3-220ENST00000566040 PHACTR3Q96KR7 559 aa13.3□□□□□ -0.28
CLN3-220ENST00000566040 LRRC4BQ9NT99 713 aa13.3□□□□□ -0.28
CLN3-220ENST00000566040 MYBBP1AQ9BQG0 1328 aaKnown RBP13.3□□□□□ -0.28
CLN3-220ENST00000566040 KDM3BQ7LBC6 1761 aa13.3□□□□□ -0.28
CLN3-220ENST00000566040 KCPQ6ZWJ8 1503 aa13.29□□□□□ -0.28
CLN3-220ENST00000566040 RALBP1Q15311 655 aa13.29□□□□□ -0.28
CLN3-220ENST00000566040 MTHFSDQ2M296 383 aaKnown RBP13.29□□□□□ -0.28
CLN3-220ENST00000566040 SPG7Q9UQ90 795 aa13.29□□□□□ -0.28
CLN3-220ENST00000566040 C4AP0C0L4 1744 aa13.28□□□□□ -0.28
CLN3-220ENST00000566040 CCDC184Q52MB2 194 aa13.28□□□□□ -0.28
CLN3-220ENST00000566040 ZNF530Q6P9A1 599 aaPredicted RBP13.28□□□□□ -0.28
CLN3-220ENST00000566040 SF3B2Q13435 895 aaKnown RBP13.27□□□□□ -0.29
CLN3-220ENST00000566040 TXNRD1Q16881 649 aa13.27□□□□□ -0.29
CLN3-220ENST00000566040 IFNL2Q8IZJ0 200 aa13.27□□□□□ -0.29
CLN3-220ENST00000566040 PIGBQ92521 554 aa13.27□□□□□ -0.29
CLN3-220ENST00000566040 PLEKHF1Q96S99 279 aa13.27□□□□□ -0.29
CLN3-220ENST00000566040 U2SURPO15042 1029 aaKnown RBP13.26□□□□□ -0.29
CLN3-220ENST00000566040 CEMIPQ8WUJ3 1361 aa13.25□□□□□ -0.29
CLN3-220ENST00000566040 PRKAR2BP31323 418 aa13.25□□□□□ -0.29
CLN3-220ENST00000566040 KCNQ4P56696 695 aa13.25□□□□□ -0.29
CLN3-220ENST00000566040 AMOTQ4VCS5 1084 aa13.25□□□□□ -0.29
CLN3-220ENST00000566040 PLEKHO1Q53GL0 409 aaPredicted RBP13.25□□□□□ -0.29
CLN3-220ENST00000566040 SLC4A9Q96Q91 983 aa13.25□□□□□ -0.29
CLN3-220ENST00000566040 LGR6Q9HBX8 967 aa13.25□□□□□ -0.29
CLN3-220ENST00000566040 PALLDQ8WX93 1383 aa13.24□□□□□ -0.29
CLN3-220ENST00000566040 ZNF827Q17R98 1081 aa13.24□□□□□ -0.29
CLN3-220ENST00000566040 MPRIPQ6WCQ1 1025 aa13.24□□□□□ -0.29
CLN3-220ENST00000566040 CFAP53Q96M91 514 aa13.24□□□□□ -0.29
CLN3-220ENST00000566040 PDGFDQ9GZP0 370 aaPredicted RBP13.24□□□□□ -0.29
CLN3-220ENST00000566040 MAP3K5Q99683 1374 aa13.23□□□□□ -0.29
CLN3-220ENST00000566040 PSDA5PKW4 1024 aaPredicted RBP13.23□□□□□ -0.29
CLN3-220ENST00000566040 SYTL4Q96C24 671 aaPredicted RBP13.23□□□□□ -0.29
CLN3-220ENST00000566040 DCAF5Q96JK2 942 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms