RNA–Protein interactions for RNA: ENST00000565887.1

SHCBP1-204, Transcript of SHC binding and spindle associated 1, humanhuman

TSL 5

Gene SHCBP1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1-204ENST00000565887 PLEKHO1Q53GL0 409 aaPredicted RBP16.87■□□□□ 0.29
SHCBP1-204ENST00000565887 SULT6B1Q6IMI4 303 aa16.87■□□□□ 0.29
SHCBP1-204ENST00000565887 DDX54Q8TDD1 881 aaKnown RBP16.87■□□□□ 0.29
SHCBP1-204ENST00000565887 MYBBP1AQ9BQG0 1328 aaKnown RBP16.87■□□□□ 0.29
SHCBP1-204ENST00000565887 RGPD2P0DJD1 1756 aa16.87■□□□□ 0.29
SHCBP1-204ENST00000565887 PRKRIP1Q9H875 184 aaPredicted RBP16.86■□□□□ 0.29
SHCBP1-204ENST00000565887 PCDH11XQ9BZA7 1347 aa16.86■□□□□ 0.29
SHCBP1-204ENST00000565887 PCDH11YQ9BZA8 1340 aa16.86■□□□□ 0.29
SHCBP1-204ENST00000565887 FAM182BQ5T319 152 aa16.85■□□□□ 0.29
SHCBP1-204ENST00000565887 KDRP35968 1356 aa16.85■□□□□ 0.29
SHCBP1-204ENST00000565887 LRRC37A3O60309 1634 aa16.85■□□□□ 0.29
SHCBP1-204ENST00000565887 U2SURPO15042 1029 aaKnown RBP16.84■□□□□ 0.29
SHCBP1-204ENST00000565887 PNNQ9H307 717 aaKnown RBP16.84■□□□□ 0.29
SHCBP1-204ENST00000565887 ANP32CO43423 234 aa16.83■□□□□ 0.28
SHCBP1-204ENST00000565887 MEGF6O75095 1541 aa16.83■□□□□ 0.28
SHCBP1-204ENST00000565887 BAG6P46379 1132 aa16.83■□□□□ 0.28
SHCBP1-204ENST00000565887 IFNL2Q8IZJ0 200 aa16.83■□□□□ 0.28
SHCBP1-204ENST00000565887 BCL11BQ9C0K0 894 aaPredicted RBP16.83■□□□□ 0.28
SHCBP1-204ENST00000565887 FCHSD2O94868 740 aa16.82■□□□□ 0.28
SHCBP1-204ENST00000565887 TRIM37O94972 964 aa16.82■□□□□ 0.28
SHCBP1-204ENST00000565887 HSP90AB1P08238 724 aaKnown RBP16.82■□□□□ 0.28
SHCBP1-204ENST00000565887 NKX1-1Q15270 411 aaPredicted RBP16.81■□□□□ 0.28
SHCBP1-204ENST00000565887 COL3A1P02461 1466 aaPredicted RBP16.8■□□□□ 0.28
SHCBP1-204ENST00000565887 U2AF1L5P0DN76 240 aaPredicted RBP16.8■□□□□ 0.28
SHCBP1-204ENST00000565887 U2AF1Q01081 240 aaKnown RBP eCLIP16.8■□□□□ 0.28
SHCBP1-204ENST00000565887 APBA3O96018 575 aa16.79■□□□□ 0.28
SHCBP1-204ENST00000565887 NEFMP07197 916 aa16.79■□□□□ 0.28
SHCBP1-204ENST00000565887 HMOX1P09601 288 aa16.79■□□□□ 0.28
SHCBP1-204ENST00000565887 HMGB2P26583 209 aaKnown RBP16.79■□□□□ 0.28
SHCBP1-204ENST00000565887 C1orf141Q5JVX7 400 aa16.79■□□□□ 0.28
SHCBP1-204ENST00000565887 AEBP1Q8IUX7 1158 aa16.79■□□□□ 0.28
SHCBP1-204ENST00000565887 RGPD1P0DJD0 1748 aa16.79■□□□□ 0.28
SHCBP1-204ENST00000565887 PLSCR1O15162 318 aa16.78■□□□□ 0.28
SHCBP1-204ENST00000565887 CYP27B1O15528 508 aa16.78■□□□□ 0.28
SHCBP1-204ENST00000565887 EP400Q96L91 3159 aa16.78■□□□□ 0.28
SHCBP1-204ENST00000565887 PHKG2P15735 406 aa16.77■□□□□ 0.28
SHCBP1-204ENST00000565887 ZNF530Q6P9A1 599 aaPredicted RBP16.76■□□□□ 0.27
SHCBP1-204ENST00000565887 GAS2L2Q8NHY3 880 aa16.76■□□□□ 0.27
SHCBP1-204ENST00000565887 DCAF5Q96JK2 942 aa16.76■□□□□ 0.27
SHCBP1-204ENST00000565887 KAT6BQ8WYB5 2073 aa16.76■□□□□ 0.27
SHCBP1-204ENST00000565887 PRIM1P49642 420 aaKnown RBP16.75■□□□□ 0.27
SHCBP1-204ENST00000565887 AKAP4Q5JQC9 854 aa16.75■□□□□ 0.27
SHCBP1-204ENST00000565887 PKD1L3Q7Z443 1732 aa16.75■□□□□ 0.27
SHCBP1-204ENST00000565887 ERVV-2B6SEH9 535 aa16.74■□□□□ 0.27
SHCBP1-204ENST00000565887 ACSBG1Q96GR2 724 aa16.74■□□□□ 0.27
SHCBP1-204ENST00000565887 RSPH6AQ9H0K4 717 aa16.74■□□□□ 0.27
SHCBP1-204ENST00000565887 SBF2Q86WG5 1849 aa16.73■□□□□ 0.27
SHCBP1-204ENST00000565887 KCNQ2O43526 872 aa16.73■□□□□ 0.27
SHCBP1-204ENST00000565887 PRKAR2BP31323 418 aa16.73■□□□□ 0.27
SHCBP1-204ENST00000565887 WDR43Q15061 677 aaKnown RBP eCLIP16.73■□□□□ 0.27
SHCBP1-204ENST00000565887 SYTL4Q96C24 671 aaPredicted RBP16.73■□□□□ 0.27
SHCBP1-204ENST00000565887 DEFB132Q7Z7B7 95 aa16.72■□□□□ 0.27
SHCBP1-204ENST00000565887 CAMKK2Q96RR4 588 aa16.72■□□□□ 0.27
SHCBP1-204ENST00000565887 EN1Q05925 392 aaPredicted RBP16.71■□□□□ 0.27
SHCBP1-204ENST00000565887 MTHFSDQ2M296 383 aaKnown RBP16.71■□□□□ 0.27
SHCBP1-204ENST00000565887 SHANK3Q9BYB0 1731 aa16.7■□□□□ 0.26
SHCBP1-204ENST00000565887 SMARCC1Q92922 1105 aaPredicted RBP16.7■□□□□ 0.26
SHCBP1-204ENST00000565887 TMOD3Q9NYL9 352 aa16.7■□□□□ 0.26
SHCBP1-204ENST00000565887 GNAT3A8MTJ3 354 aa16.69■□□□□ 0.26
SHCBP1-204ENST00000565887 HTATSF1O43719 755 aaKnown RBP16.69■□□□□ 0.26
SHCBP1-204ENST00000565887 MPRIPQ6WCQ1 1025 aa16.69■□□□□ 0.26
SHCBP1-204ENST00000565887 NHSQ6T4R5 1651 aa16.69■□□□□ 0.26
SHCBP1-204ENST00000565887 CABP4P57796 275 aa16.68■□□□□ 0.26
SHCBP1-204ENST00000565887 MAPK8IP3Q9UPT6 1336 aa16.68■□□□□ 0.26
SHCBP1-204ENST00000565887 EZH2Q15910 746 aaKnown RBP16.67■□□□□ 0.26
SHCBP1-204ENST00000565887 SLC27A3Q5K4L6 730 aa16.67■□□□□ 0.26
SHCBP1-204ENST00000565887 NBPF14Q5TI25 921 aa16.67■□□□□ 0.26
SHCBP1-204ENST00000565887 PTF1AQ7RTS3 328 aa16.67■□□□□ 0.26
SHCBP1-204ENST00000565887 RTF1Q92541 710 aaKnown RBP16.67■□□□□ 0.26
SHCBP1-204ENST00000565887 PHACTR3Q96KR7 559 aa16.67■□□□□ 0.26
SHCBP1-204ENST00000565887 PLEKHF1Q96S99 279 aa16.67■□□□□ 0.26
SHCBP1-204ENST00000565887 TNS1Q9HBL0 1735 aaKnown RBP16.67■□□□□ 0.26
SHCBP1-204ENST00000565887 PIGBQ92521 554 aa16.66■□□□□ 0.26
SHCBP1-204ENST00000565887 RNMTO43148 476 aaKnown RBP16.65■□□□□ 0.26
SHCBP1-204ENST00000565887 TXNRD1Q16881 649 aa16.65■□□□□ 0.26
SHCBP1-204ENST00000565887 ADAMTS8Q9UP79 889 aa16.65■□□□□ 0.26
SHCBP1-204ENST00000565887 MAP3K5Q99683 1374 aa16.64■□□□□ 0.26
SHCBP1-204ENST00000565887 RUNDC1Q96C34 613 aa16.64■□□□□ 0.25
SHCBP1-204ENST00000565887 MRS2Q9HD23 443 aa16.64■□□□□ 0.25
SHCBP1-204ENST00000565887 RGPD3A6NKT7 1758 aaPredicted RBP16.64■□□□□ 0.25
SHCBP1-204ENST00000565887 RGPD4Q7Z3J3 1758 aa16.64■□□□□ 0.25
SHCBP1-204ENST00000565887 NFE2L2Q16236 605 aa16.63■□□□□ 0.25
SHCBP1-204ENST00000565887 NFATC2IPQ8NCF5 419 aa16.63■□□□□ 0.25
SHCBP1-204ENST00000565887 SLC52A2Q9HAB3 445 aa16.63■□□□□ 0.25
SHCBP1-204ENST00000565887 DOT1LQ8TEK3 1739 aa16.62■□□□□ 0.25
SHCBP1-204ENST00000565887 BTAF1O14981 1849 aa16.62■□□□□ 0.25
SHCBP1-204ENST00000565887 TEFQ10587 303 aa16.62■□□□□ 0.25
SHCBP1-204ENST00000565887 PROM2Q8N271 834 aa16.62■□□□□ 0.25
SHCBP1-204ENST00000565887 LGR6Q9HBX8 967 aa16.62■□□□□ 0.25
SHCBP1-204ENST00000565887 LMOD3Q0VAK6 560 aa16.61■□□□□ 0.25
SHCBP1-204ENST00000565887 PNISRQ8TF01 805 aaKnown RBP16.61■□□□□ 0.25
SHCBP1-204ENST00000565887 KDM6AO15550 1401 aaPredicted RBP16.61■□□□□ 0.25
SHCBP1-204ENST00000565887 DIEXFQ68CQ4 756 aaKnown RBP16.6■□□□□ 0.25
SHCBP1-204ENST00000565887 IL17REQ8NFR9 667 aa16.6■□□□□ 0.25
SHCBP1-204ENST00000565887 ITGB4P16144 1822 aa16.6■□□□□ 0.25
SHCBP1-204ENST00000565887 ATG3Q9NT62 314 aa16.59■□□□□ 0.25
SHCBP1-204ENST00000565887 CCNL1Q9UK58 526 aaPredicted RBP16.59■□□□□ 0.25
SHCBP1-204ENST00000565887 ASAP1Q9ULH1 1129 aa16.59■□□□□ 0.25
SHCBP1-204ENST00000565887 PALLDQ8WX93 1383 aa16.59■□□□□ 0.25
SHCBP1-204ENST00000565887 TMPOP42166 694 aaKnown RBP16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms