RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 C1QTNF8P60827 252 aa23.62■■□□□ 1.37
CLN3-217ENST00000565354 KNSTRNQ9Y448 316 aa23.62■■□□□ 1.37
CLN3-217ENST00000565354 ERBB3P21860 1342 aa23.61■■□□□ 1.37
CLN3-217ENST00000565354 NLRP2Q9NX02 1062 aa23.61■■□□□ 1.37
CLN3-217ENST00000565354 IL2RBP14784 551 aa23.6■■□□□ 1.37
CLN3-217ENST00000565354 ZNF827Q17R98 1081 aa23.59■■□□□ 1.37
CLN3-217ENST00000565354 QSER1Q2KHR3 1735 aa23.59■■□□□ 1.37
CLN3-217ENST00000565354 LRRC4BQ9NT99 713 aa23.58■■□□□ 1.37
CLN3-217ENST00000565354 GOLGB1Q14789 3259 aaKnown RBP23.58■■□□□ 1.36
CLN3-217ENST00000565354 GPR162Q16538 588 aa23.56■■□□□ 1.36
CLN3-217ENST00000565354 COL24A1Q17RW2 1714 aa23.56■■□□□ 1.36
CLN3-217ENST00000565354 ANKRD24Q8TF21 1146 aa23.54■■□□□ 1.36
CLN3-217ENST00000565354 SLC16A10Q8TF71 515 aa23.54■■□□□ 1.36
CLN3-217ENST00000565354 AKT1S1Q96B36 256 aa23.54■■□□□ 1.36
CLN3-217ENST00000565354 NSD2O96028 1365 aa23.53■■□□□ 1.36
CLN3-217ENST00000565354 TUBGCP6Q96RT7 1819 aa23.52■■□□□ 1.36
CLN3-217ENST00000565354 ANKRD26Q9UPS8 1709 aa23.51■■□□□ 1.35
CLN3-217ENST00000565354 SLC27A3Q5K4L6 730 aa23.51■■□□□ 1.35
CLN3-217ENST00000565354 POLD1P28340 1107 aa23.5■■□□□ 1.35
CLN3-217ENST00000565354 AMPHP49418 695 aa23.5■■□□□ 1.35
CLN3-217ENST00000565354 MORC1Q86VD1 984 aa23.49■■□□□ 1.35
CLN3-217ENST00000565354 KLHL34Q8N239 644 aa23.49■■□□□ 1.35
CLN3-217ENST00000565354 PNPLA7Q6ZV29 1317 aa23.49■■□□□ 1.35
CLN3-217ENST00000565354 FAM208AQ9UK61 1670 aaKnown RBP23.48■■□□□ 1.35
CLN3-217ENST00000565354 FBLN1P23142 703 aa23.48■■□□□ 1.35
CLN3-217ENST00000565354 GIGYF1O75420 1035 aaPredicted RBP23.47■■□□□ 1.35
CLN3-217ENST00000565354 TNNT2P45379 298 aaPredicted RBP23.47■■□□□ 1.35
CLN3-217ENST00000565354 CNGB1Q14028 1251 aaPredicted RBP23.47■■□□□ 1.35
CLN3-217ENST00000565354 RRS1Q15050 365 aaKnown RBP23.47■■□□□ 1.35
CLN3-217ENST00000565354 MAP3K19Q56UN5 1328 aa23.47■■□□□ 1.35
CLN3-217ENST00000565354 PELP1Q8IZL8 1130 aaKnown RBP23.46■■□□□ 1.35
CLN3-217ENST00000565354 DDX54Q8TDD1 881 aaKnown RBP23.46■■□□□ 1.35
CLN3-217ENST00000565354 CEP350Q5VT06 3117 aa23.46■■□□□ 1.35
CLN3-217ENST00000565354 LY75O60449 1722 aa23.45■■□□□ 1.34
CLN3-217ENST00000565354 PER1O15534 1290 aaPredicted RBP23.45■■□□□ 1.34
CLN3-217ENST00000565354 AMER1Q5JTC6 1135 aaPredicted RBP23.45■■□□□ 1.34
CLN3-217ENST00000565354 CC2D1BQ5T0F9 858 aaKnown RBP23.45■■□□□ 1.34
CLN3-217ENST00000565354 TFCP2L1Q9NZI6 479 aa23.45■■□□□ 1.34
CLN3-217ENST00000565354 SHANK3Q9BYB0 1731 aa23.45■■□□□ 1.34
CLN3-217ENST00000565354 IP6K1Q92551 441 aa23.44■■□□□ 1.34
CLN3-217ENST00000565354 DOT1LQ8TEK3 1739 aa23.44■■□□□ 1.34
CLN3-217ENST00000565354 PPM1GO15355 546 aaPredicted RBP23.43■■□□□ 1.34
CLN3-217ENST00000565354 NLGN2Q8NFZ4 835 aa23.43■■□□□ 1.34
CLN3-217ENST00000565354 RTL1A6NKG5 1358 aa23.42■■□□□ 1.34
CLN3-217ENST00000565354 KCNQ4P56696 695 aa23.42■■□□□ 1.34
CLN3-217ENST00000565354 HOXC9P31274 260 aa23.41■■□□□ 1.34
CLN3-217ENST00000565354 DDX10Q13206 875 aaKnown RBP23.41■■□□□ 1.34
CLN3-217ENST00000565354 SYTL4Q96C24 671 aaPredicted RBP23.41■■□□□ 1.34
CLN3-217ENST00000565354 LTV1Q96GA3 475 aaPredicted RBP23.41■■□□□ 1.34
CLN3-217ENST00000565354 ZNF316A6NFI3 1004 aaPredicted RBP23.4■■□□□ 1.34
CLN3-217ENST00000565354 PRIM1P49642 420 aaKnown RBP23.4■■□□□ 1.34
CLN3-217ENST00000565354 EMILIN1Q9Y6C2 1016 aa23.4■■□□□ 1.34
CLN3-217ENST00000565354 FLT4P35916 1363 aa23.39■■□□□ 1.33
CLN3-217ENST00000565354 KIF24Q5T7B8 1368 aa23.39■■□□□ 1.33
CLN3-217ENST00000565354 MAP2P11137 1827 aaKnown RBP23.38■■□□□ 1.33
CLN3-217ENST00000565354 SMG6Q86US8 1419 aaKnown RBP23.38■■□□□ 1.33
CLN3-217ENST00000565354 NPC1L1Q9UHC9 1359 aa23.38■■□□□ 1.33
CLN3-217ENST00000565354 RGPD2P0DJD1 1756 aa23.37■■□□□ 1.33
CLN3-217ENST00000565354 GRIN3BO60391 1043 aa23.36■■□□□ 1.33
CLN3-217ENST00000565354 YBX3P16989 372 aaKnown RBP eCLIP23.36■■□□□ 1.33
CLN3-217ENST00000565354 IFFO2Q5TF58 517 aa23.35■■□□□ 1.33
CLN3-217ENST00000565354 POLKQ9UBT6 870 aa23.35■■□□□ 1.33
CLN3-217ENST00000565354 CCNL1Q9UK58 526 aaPredicted RBP23.35■■□□□ 1.33
CLN3-217ENST00000565354 ZCRB1Q8TBF4 217 aaKnown RBP23.34■■□□□ 1.33
CLN3-217ENST00000565354 INSRP06213 1382 aa23.33■■□□□ 1.33
CLN3-217ENST00000565354 HSP90AB2PQ58FF8 381 aa23.33■■□□□ 1.33
CLN3-217ENST00000565354 MSH5O43196 834 aa23.32■■□□□ 1.32
CLN3-217ENST00000565354 COL23A1Q86Y22 540 aaPredicted RBP23.32■■□□□ 1.32
CLN3-217ENST00000565354 MEGF6O75095 1541 aa23.32■■□□□ 1.32
CLN3-217ENST00000565354 C5P01031 1676 aa23.29■■□□□ 1.32
CLN3-217ENST00000565354 ATP10DQ9P241 1426 aa23.27■■□□□ 1.32
CLN3-217ENST00000565354 TAF1LQ8IZX4 1826 aa23.27■■□□□ 1.32
CLN3-217ENST00000565354 MSL1Q68DK7 614 aa23.27■■□□□ 1.32
CLN3-217ENST00000565354 MTHFSP49914 203 aa23.25■■□□□ 1.31
CLN3-217ENST00000565354 CD2APQ9Y5K6 639 aa23.25■■□□□ 1.31
CLN3-217ENST00000565354 EIF4A2Q14240 407 aaKnown RBP23.22■■□□□ 1.31
CLN3-217ENST00000565354 NBPF6Q5VWK0 638 aa23.22■■□□□ 1.31
CLN3-217ENST00000565354 USHBP1Q8N6Y0 703 aa23.22■■□□□ 1.31
CLN3-217ENST00000565354 FLAD1Q8NFF5 587 aa23.22■■□□□ 1.31
CLN3-217ENST00000565354 NBPF4Q96M43 638 aa23.22■■□□□ 1.31
CLN3-217ENST00000565354 HMGB2P26583 209 aaKnown RBP23.21■■□□□ 1.31
CLN3-217ENST00000565354 GPBP1L1Q9HC44 474 aaPredicted RBP23.21■■□□□ 1.31
CLN3-217ENST00000565354 ADCY9O60503 1353 aa23.2■■□□□ 1.3
CLN3-217ENST00000565354 RAPGEF4Q8WZA2 1011 aa23.2■■□□□ 1.3
CLN3-217ENST00000565354 CFAP53Q96M91 514 aa23.2■■□□□ 1.3
CLN3-217ENST00000565354 PALLDQ8WX93 1383 aa23.18■■□□□ 1.3
CLN3-217ENST00000565354 PPP2R1AP30153 589 aa23.18■■□□□ 1.3
CLN3-217ENST00000565354 ITGB4P16144 1822 aa23.17■■□□□ 1.3
CLN3-217ENST00000565354 C4BP0C0L5 1744 aa23.17■■□□□ 1.3
CLN3-217ENST00000565354 TATP17735 454 aaPredicted RBP23.17■■□□□ 1.3
CLN3-217ENST00000565354 RALBP1Q15311 655 aa23.17■■□□□ 1.3
CLN3-217ENST00000565354 EYA1Q99502 592 aa23.17■■□□□ 1.3
CLN3-217ENST00000565354 PCDH11XQ9BZA7 1347 aa23.16■■□□□ 1.3
CLN3-217ENST00000565354 PCDH11YQ9BZA8 1340 aa23.16■■□□□ 1.3
CLN3-217ENST00000565354 UBR3Q6ZT12 1888 aa23.16■■□□□ 1.3
CLN3-217ENST00000565354 DIAPH1O60610 1272 aaKnown RBP23.16■■□□□ 1.3
CLN3-217ENST00000565354 TOGARAM1Q9Y4F4 1720 aa23.16■■□□□ 1.3
CLN3-217ENST00000565354 HSPA6P17066 643 aa23.15■■□□□ 1.3
CLN3-217ENST00000565354 MPRIPQ6WCQ1 1025 aa23.14■■□□□ 1.29
CLN3-217ENST00000565354 ZNF526Q8TF50 670 aaPredicted RBP23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms