RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 ITSN1Q15811 1721 aa9.3□□□□□ -0.92
HERPUD1-209ENST00000564678 ANP32AP39687 249 aaKnown RBP9.3□□□□□ -0.92
HERPUD1-209ENST00000564678 CALD1Q05682 793 aaKnown RBP9.3□□□□□ -0.92
HERPUD1-209ENST00000564678 DDRGK1Q96HY6 314 aa9.3□□□□□ -0.92
HERPUD1-209ENST00000564678 PRR36Q9H6K5 1346 aa9.3□□□□□ -0.92
HERPUD1-209ENST00000564678 PTCH1Q13635 1447 aa9.29□□□□□ -0.92
HERPUD1-209ENST00000564678 SPDYE2BA6NHP3 402 aa9.29□□□□□ -0.92
HERPUD1-209ENST00000564678 SPDYE6P0CI01 402 aa9.29□□□□□ -0.92
HERPUD1-209ENST00000564678 IL13P35225 146 aa9.29□□□□□ -0.92
HERPUD1-209ENST00000564678 SPDYE2Q495Y8 402 aa9.29□□□□□ -0.92
HERPUD1-209ENST00000564678 NME9Q86XW9 330 aa9.29□□□□□ -0.92
HERPUD1-209ENST00000564678 FAM212AQ96EL1 285 aa9.29□□□□□ -0.92
HERPUD1-209ENST00000564678 AMOTL2Q9Y2J4 779 aa9.29□□□□□ -0.92
HERPUD1-209ENST00000564678 PIK3R4Q99570 1358 aa9.29□□□□□ -0.92
HERPUD1-209ENST00000564678 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.29□□□□□ -0.92
HERPUD1-209ENST00000564678 PTPRUQ92729 1446 aa9.28□□□□□ -0.92
HERPUD1-209ENST00000564678 PPM1GO15355 546 aaPredicted RBP9.28□□□□□ -0.92
HERPUD1-209ENST00000564678 CAPN15O75808 1086 aa9.28□□□□□ -0.92
HERPUD1-209ENST00000564678 TTC21BQ7Z4L5 1316 aa9.28□□□□□ -0.92
HERPUD1-209ENST00000564678 NCKAP5LQ9HCH0 1330 aa9.28□□□□□ -0.92
HERPUD1-209ENST00000564678 TOPAZ1Q8N9V7 1692 aa9.28□□□□□ -0.92
HERPUD1-209ENST00000564678 PRKAR2BP31323 418 aa9.27□□□□□ -0.92
HERPUD1-209ENST00000564678 NFE2L2Q16236 605 aa9.27□□□□□ -0.92
HERPUD1-209ENST00000564678 ZKSCAN2Q63HK3 967 aa9.27□□□□□ -0.92
HERPUD1-209ENST00000564678 PARP9Q8IXQ6 854 aa9.27□□□□□ -0.92
HERPUD1-209ENST00000564678 PMFBP1Q8TBY8 1022 aa9.27□□□□□ -0.92
HERPUD1-209ENST00000564678 FRAT1Q92837 279 aaPredicted RBP9.27□□□□□ -0.92
HERPUD1-209ENST00000564678 SLC26A8Q96RN1 970 aa9.27□□□□□ -0.92
HERPUD1-209ENST00000564678 EMILIN1Q9Y6C2 1016 aa9.27□□□□□ -0.92
HERPUD1-209ENST00000564678 ACEP12821 1306 aa9.27□□□□□ -0.92
HERPUD1-209ENST00000564678 LMOD3Q0VAK6 560 aa9.27□□□□□ -0.93
HERPUD1-209ENST00000564678 FAM177A1Q8N128 213 aaPredicted RBP9.27□□□□□ -0.93
HERPUD1-209ENST00000564678 TTC21AQ8NDW8 1320 aa9.27□□□□□ -0.93
HERPUD1-209ENST00000564678 IPO9Q96P70 1041 aaKnown RBP9.27□□□□□ -0.93
HERPUD1-209ENST00000564678 COG6Q9Y2V7 657 aa9.27□□□□□ -0.93
HERPUD1-209ENST00000564678 LRRC7Q96NW7 1537 aa9.26□□□□□ -0.93
HERPUD1-209ENST00000564678 USP6P35125 1406 aa9.26□□□□□ -0.93
HERPUD1-209ENST00000564678 EXOSC9Q06265 439 aaKnown RBP9.26□□□□□ -0.93
HERPUD1-209ENST00000564678 ALDH1L2Q3SY69 923 aa9.26□□□□□ -0.93
HERPUD1-209ENST00000564678 DHX37Q8IY37 1157 aaKnown RBP9.26□□□□□ -0.93
HERPUD1-209ENST00000564678 PANK1Q8TE04 598 aa9.26□□□□□ -0.93
HERPUD1-209ENST00000564678 FBLN1P23142 703 aa9.26□□□□□ -0.93
HERPUD1-209ENST00000564678 RASEFQ8IZ41 740 aa9.26□□□□□ -0.93
HERPUD1-209ENST00000564678 OVOS2A0A0J9YW53 1432 aa9.25□□□□□ -0.93
HERPUD1-209ENST00000564678 OVOS2Q6IE36 1432 aa9.25□□□□□ -0.93
HERPUD1-209ENST00000564678 SSH2Q76I76 1423 aa9.25□□□□□ -0.93
HERPUD1-209ENST00000564678 USP31Q70CQ4 1352 aa9.25□□□□□ -0.93
HERPUD1-209ENST00000564678 IPO8O15397 1037 aaKnown RBP9.25□□□□□ -0.93
HERPUD1-209ENST00000564678 DZIP1LQ8IYY4 767 aaKnown RBP9.25□□□□□ -0.93
HERPUD1-209ENST00000564678 TSR2Q969E8 191 aaKnown RBP9.25□□□□□ -0.93
HERPUD1-209ENST00000564678 ZRANB1Q9UGI0 708 aa9.25□□□□□ -0.93
HERPUD1-209ENST00000564678 NRKQ7Z2Y5 1582 aa9.25□□□□□ -0.93
HERPUD1-209ENST00000564678 GNAI1P63096 354 aa9.24□□□□□ -0.93
HERPUD1-209ENST00000564678 MVPQ14764 893 aaKnown RBP9.24□□□□□ -0.93
HERPUD1-209ENST00000564678 KIF16BQ96L93 1317 aa9.24□□□□□ -0.93
HERPUD1-209ENST00000564678 IGHDP01880 384 aa9.24□□□□□ -0.93
HERPUD1-209ENST00000564678 RRS1Q15050 365 aaKnown RBP9.24□□□□□ -0.93
HERPUD1-209ENST00000564678 FAM161AQ3B820 660 aa9.24□□□□□ -0.93
HERPUD1-209ENST00000564678 SMC4Q9NTJ3 1288 aa9.24□□□□□ -0.93
HERPUD1-209ENST00000564678 IFT57Q9NWB7 429 aa9.24□□□□□ -0.93
HERPUD1-209ENST00000564678 ANKARQ7Z5J8 1434 aa9.24□□□□□ -0.93
HERPUD1-209ENST00000564678 HMOX1P09601 288 aa9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 RLBP1P12271 317 aa9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 ATF7IPQ6VMQ6 1270 aa9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 FTSJ3Q8IY81 847 aaKnown RBP9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 SSH1Q8WYL5 1049 aa9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 PHACTR3Q96KR7 559 aa9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 RWDD1Q9H446 243 aaPredicted RBP9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 NOP58Q9Y2X3 529 aaKnown RBP9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 SETD1BQ9UPS6 1966 aaKnown RBP9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 XRN1Q8IZH2 1706 aaKnown RBP9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 GPR37O15354 613 aa9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 ZNF853P0CG23 659 aa9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 BCL2L13Q9BXK5 485 aa9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 DDX19BQ9UMR2 479 aa9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 CEP170BQ9Y4F5 1589 aaPredicted RBP9.23□□□□□ -0.93
HERPUD1-209ENST00000564678 NALCNQ8IZF0 1738 aa9.22□□□□□ -0.93
HERPUD1-209ENST00000564678 RIMS1Q86UR5 1692 aaKnown RBP9.22□□□□□ -0.93
HERPUD1-209ENST00000564678 TRIM27P14373 513 aa9.22□□□□□ -0.93
HERPUD1-209ENST00000564678 ANKLE2Q86XL3 938 aa9.22□□□□□ -0.93
HERPUD1-209ENST00000564678 ARHGAP45Q92619 1136 aa9.22□□□□□ -0.93
HERPUD1-209ENST00000564678 LARP6Q9BRS8 491 aaKnown RBP9.22□□□□□ -0.93
HERPUD1-209ENST00000564678 CHMP4BQ9H444 224 aaKnown RBP9.22□□□□□ -0.93
HERPUD1-209ENST00000564678 EIF4A2Q14240 407 aaKnown RBP9.21□□□□□ -0.94
HERPUD1-209ENST00000564678 NGDNQ8NEJ9 315 aaKnown RBP9.21□□□□□ -0.94
HERPUD1-209ENST00000564678 NOB1Q9ULX3 412 aaKnown RBP9.2□□□□□ -0.94
HERPUD1-209ENST00000564678 PCDHB15Q9Y5E8 787 aa9.2□□□□□ -0.94
HERPUD1-209ENST00000564678 KIF24Q5T7B8 1368 aa9.2□□□□□ -0.94
HERPUD1-209ENST00000564678 NUTM2FA1L443 756 aa9.2□□□□□ -0.94
HERPUD1-209ENST00000564678 VAMP4O75379 141 aa9.2□□□□□ -0.94
HERPUD1-209ENST00000564678 CCDC102AQ96A19 550 aa9.2□□□□□ -0.94
HERPUD1-209ENST00000564678 KCNA6P17658 529 aa9.19□□□□□ -0.94
HERPUD1-209ENST00000564678 RGS3P49796 1198 aa9.19□□□□□ -0.94
HERPUD1-209ENST00000564678 HDAC1Q13547 482 aaPredicted RBP9.19□□□□□ -0.94
HERPUD1-209ENST00000564678 C8orf34Q49A92 452 aa9.19□□□□□ -0.94
HERPUD1-209ENST00000564678 GOPCQ9HD26 462 aa9.19□□□□□ -0.94
HERPUD1-209ENST00000564678 TNNQ9UQP3 1299 aa9.19□□□□□ -0.94
HERPUD1-209ENST00000564678 ARIH1Q9Y4X5 557 aaPredicted RBP9.19□□□□□ -0.94
HERPUD1-209ENST00000564678 DLG5Q8TDM6 1919 aa9.19□□□□□ -0.94
HERPUD1-209ENST00000564678 SBNO1A3KN83 1393 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms