RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 PPP2R1AP30153 589 aa22.58■■□□□ 1.21
CLK3-207ENST00000562389 PLEKHG2Q9H7P9 1386 aa22.58■■□□□ 1.21
CLK3-207ENST00000562389 ZCRB1Q8TBF4 217 aaKnown RBP22.56■■□□□ 1.2
CLK3-207ENST00000562389 DIAPH1O60610 1272 aaKnown RBP22.55■■□□□ 1.2
CLK3-207ENST00000562389 KDRP35968 1356 aa22.54■■□□□ 1.2
CLK3-207ENST00000562389 SF3B2Q13435 895 aaKnown RBP22.54■■□□□ 1.2
CLK3-207ENST00000562389 RALBP1Q15311 655 aa22.54■■□□□ 1.2
CLK3-207ENST00000562389 NHSQ6T4R5 1651 aa22.53■■□□□ 1.2
CLK3-207ENST00000562389 CFAP53Q96M91 514 aa22.53■■□□□ 1.2
CLK3-207ENST00000562389 TRIM37O94972 964 aa22.52■■□□□ 1.2
CLK3-207ENST00000562389 PCDH11XQ9BZA7 1347 aa22.52■■□□□ 1.2
CLK3-207ENST00000562389 PCDH11YQ9BZA8 1340 aa22.52■■□□□ 1.2
CLK3-207ENST00000562389 DDX54Q8TDD1 881 aaKnown RBP22.51■■□□□ 1.19
CLK3-207ENST00000562389 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.5■■□□□ 1.19
CLK3-207ENST00000562389 DOT1LQ8TEK3 1739 aa22.49■■□□□ 1.19
CLK3-207ENST00000562389 SULT6B1Q6IMI4 303 aa22.49■■□□□ 1.19
CLK3-207ENST00000562389 AEBP1Q8IUX7 1158 aa22.49■■□□□ 1.19
CLK3-207ENST00000562389 SPG7Q9UQ90 795 aa22.48■■□□□ 1.19
CLK3-207ENST00000562389 BAG6P46379 1132 aa22.47■■□□□ 1.19
CLK3-207ENST00000562389 BCL11BQ9C0K0 894 aaPredicted RBP22.47■■□□□ 1.19
CLK3-207ENST00000562389 RGPD3A6NKT7 1758 aaPredicted RBP22.47■■□□□ 1.19
CLK3-207ENST00000562389 RGPD4Q7Z3J3 1758 aa22.47■■□□□ 1.19
CLK3-207ENST00000562389 CYP27B1O15528 508 aa22.45■■□□□ 1.18
CLK3-207ENST00000562389 DEFB132Q7Z7B7 95 aa22.45■■□□□ 1.18
CLK3-207ENST00000562389 MYBBP1AQ9BQG0 1328 aaKnown RBP22.45■■□□□ 1.18
CLK3-207ENST00000562389 KAT6BQ8WYB5 2073 aa22.45■■□□□ 1.18
CLK3-207ENST00000562389 PRKRIP1Q9H875 184 aaPredicted RBP22.44■■□□□ 1.18
CLK3-207ENST00000562389 BTAF1O14981 1849 aa22.43■■□□□ 1.18
CLK3-207ENST00000562389 TOGARAM1Q9Y4F4 1720 aa22.43■■□□□ 1.18
CLK3-207ENST00000562389 U2SURPO15042 1029 aaKnown RBP22.43■■□□□ 1.18
CLK3-207ENST00000562389 APBA3O96018 575 aa22.43■■□□□ 1.18
CLK3-207ENST00000562389 HMOX1P09601 288 aa22.43■■□□□ 1.18
CLK3-207ENST00000562389 AMOTQ4VCS5 1084 aa22.43■■□□□ 1.18
CLK3-207ENST00000562389 PLEKHO1Q53GL0 409 aaPredicted RBP22.43■■□□□ 1.18
CLK3-207ENST00000562389 ACSBG1Q96GR2 724 aa22.43■■□□□ 1.18
CLK3-207ENST00000562389 NUDCQ9Y266 331 aa22.43■■□□□ 1.18
CLK3-207ENST00000562389 PTF1AQ7RTS3 328 aa22.42■■□□□ 1.18
CLK3-207ENST00000562389 RREB1Q92766 1687 aa22.42■■□□□ 1.18
CLK3-207ENST00000562389 KCNQ2O43526 872 aa22.41■■□□□ 1.18
CLK3-207ENST00000562389 NKX1-1Q15270 411 aaPredicted RBP22.41■■□□□ 1.18
CLK3-207ENST00000562389 IFNL2Q8IZJ0 200 aa22.41■■□□□ 1.18
CLK3-207ENST00000562389 PHKG2P15735 406 aa22.4■■□□□ 1.18
CLK3-207ENST00000562389 EN1Q05925 392 aaPredicted RBP22.4■■□□□ 1.18
CLK3-207ENST00000562389 ITGB4P16144 1822 aa22.4■■□□□ 1.18
CLK3-207ENST00000562389 CAMKK2Q96RR4 588 aa22.39■■□□□ 1.17
CLK3-207ENST00000562389 PLSCR1O15162 318 aa22.38■■□□□ 1.17
CLK3-207ENST00000562389 ZNF530Q6P9A1 599 aaPredicted RBP22.37■■□□□ 1.17
CLK3-207ENST00000562389 U2AF1L5P0DN76 240 aaPredicted RBP22.36■■□□□ 1.17
CLK3-207ENST00000562389 PRIM1P49642 420 aaKnown RBP22.36■■□□□ 1.17
CLK3-207ENST00000562389 U2AF1Q01081 240 aaKnown RBP eCLIP22.36■■□□□ 1.17
CLK3-207ENST00000562389 EZH2Q15910 746 aaKnown RBP22.36■■□□□ 1.17
CLK3-207ENST00000562389 RSPH6AQ9H0K4 717 aa22.36■■□□□ 1.17
CLK3-207ENST00000562389 NUP188Q5SRE5 1749 aa22.36■■□□□ 1.17
CLK3-207ENST00000562389 HSP90AB1P08238 724 aaKnown RBP22.35■■□□□ 1.17
CLK3-207ENST00000562389 SYTL4Q96C24 671 aaPredicted RBP22.34■■□□□ 1.17
CLK3-207ENST00000562389 VIRMAQ69YN4 1812 aaKnown RBP22.34■■□□□ 1.17
CLK3-207ENST00000562389 SCN11AQ9UI33 1791 aa22.33■■□□□ 1.17
CLK3-207ENST00000562389 FCHSD2O94868 740 aa22.33■■□□□ 1.17
CLK3-207ENST00000562389 C1orf141Q5JVX7 400 aa22.33■■□□□ 1.17
CLK3-207ENST00000562389 KDM6AO15550 1401 aaPredicted RBP22.32■■□□□ 1.16
CLK3-207ENST00000562389 PRKAR2BP31323 418 aa22.32■■□□□ 1.16
CLK3-207ENST00000562389 AKAP4Q5JQC9 854 aa22.32■■□□□ 1.16
CLK3-207ENST00000562389 DCAF5Q96JK2 942 aa22.32■■□□□ 1.16
CLK3-207ENST00000562389 LY75O60449 1722 aa22.31■■□□□ 1.16
CLK3-207ENST00000562389 ADAMTS7Q9UKP4 1686 aa22.31■■□□□ 1.16
CLK3-207ENST00000562389 MTHFSDQ2M296 383 aaKnown RBP22.31■■□□□ 1.16
CLK3-207ENST00000562389 ANP32CO43423 234 aa22.29■■□□□ 1.16
CLK3-207ENST00000562389 GAS2L2Q8NHY3 880 aa22.29■■□□□ 1.16
CLK3-207ENST00000562389 ERVV-2B6SEH9 535 aa22.28■■□□□ 1.16
CLK3-207ENST00000562389 MPRIPQ6WCQ1 1025 aa22.28■■□□□ 1.16
CLK3-207ENST00000562389 PROM2Q8N271 834 aa22.27■■□□□ 1.16
CLK3-207ENST00000562389 PHACTR3Q96KR7 559 aa22.27■■□□□ 1.16
CLK3-207ENST00000562389 TXNRD1Q16881 649 aa22.26■■□□□ 1.15
CLK3-207ENST00000562389 PIGBQ92521 554 aa22.26■■□□□ 1.15
CLK3-207ENST00000562389 TMOD3Q9NYL9 352 aa22.26■■□□□ 1.15
CLK3-207ENST00000562389 MRC1P22897 1456 aa22.26■■□□□ 1.15
CLK3-207ENST00000562389 MAP3K5Q99683 1374 aa22.25■■□□□ 1.15
CLK3-207ENST00000562389 PAPPAQ13219 1627 aa22.24■■□□□ 1.15
CLK3-207ENST00000562389 PLEKHF1Q96S99 279 aa22.24■■□□□ 1.15
CLK3-207ENST00000562389 PNNQ9H307 717 aaKnown RBP22.24■■□□□ 1.15
CLK3-207ENST00000562389 PALLDQ8WX93 1383 aa22.23■■□□□ 1.15
CLK3-207ENST00000562389 RNMTO43148 476 aaKnown RBP22.22■■□□□ 1.15
CLK3-207ENST00000562389 CABP4P57796 275 aa22.22■■□□□ 1.15
CLK3-207ENST00000562389 SLC27A3Q5K4L6 730 aa22.22■■□□□ 1.15
CLK3-207ENST00000562389 SMARCC1Q92922 1105 aaPredicted RBP22.22■■□□□ 1.15
CLK3-207ENST00000562389 DLG5Q8TDM6 1919 aa22.21■■□□□ 1.15
CLK3-207ENST00000562389 GNAT3A8MTJ3 354 aa22.21■■□□□ 1.15
CLK3-207ENST00000562389 NEFMP07197 916 aa22.21■■□□□ 1.15
CLK3-207ENST00000562389 WDR43Q15061 677 aaKnown RBP eCLIP22.2■■□□□ 1.14
CLK3-207ENST00000562389 LGR6Q9HBX8 967 aa22.2■■□□□ 1.14
CLK3-207ENST00000562389 SIPA1L3O60292 1781 aaPredicted RBP22.2■■□□□ 1.14
CLK3-207ENST00000562389 NBPF14Q5TI25 921 aa22.19■■□□□ 1.14
CLK3-207ENST00000562389 TAF1LQ8IZX4 1826 aa22.18■■□□□ 1.14
CLK3-207ENST00000562389 MAPK8IP3Q9UPT6 1336 aa22.18■■□□□ 1.14
CLK3-207ENST00000562389 SLC52A2Q9HAB3 445 aa22.18■■□□□ 1.14
CLK3-207ENST00000562389 LRRC4BQ9NT99 713 aa22.18■■□□□ 1.14
CLK3-207ENST00000562389 C5P01031 1676 aa22.17■■□□□ 1.14
CLK3-207ENST00000562389 ZNF831Q5JPB2 1677 aa22.17■■□□□ 1.14
CLK3-207ENST00000562389 CEMIPQ8WUJ3 1361 aa22.17■■□□□ 1.14
CLK3-207ENST00000562389 NFATC2IPQ8NCF5 419 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms