RNA–Protein interactions for RNA: ENST00000561749.1

SMPD3-202, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-202ENST00000561749 KAT6BQ8WYB5 2073 aa31.58■■■□□ 2.65
SMPD3-202ENST00000561749 ZCRB1Q8TBF4 217 aaKnown RBP31.58■■■□□ 2.65
SMPD3-202ENST00000561749 PKD1L3Q7Z443 1732 aa31.58■■■□□ 2.65
SMPD3-202ENST00000561749 CCDC125Q86Z20 511 aa31.56■■■□□ 2.64
SMPD3-202ENST00000561749 DIAPH1O60610 1272 aaKnown RBP31.55■■■□□ 2.64
SMPD3-202ENST00000561749 SF3B2Q13435 895 aaKnown RBP31.55■■■□□ 2.64
SMPD3-202ENST00000561749 AEBP1Q8IUX7 1158 aa31.54■■■□□ 2.64
SMPD3-202ENST00000561749 DEFB132Q7Z7B7 95 aa31.52■■■□□ 2.64
SMPD3-202ENST00000561749 SULT6B1Q6IMI4 303 aa31.51■■■□□ 2.63
SMPD3-202ENST00000561749 CFAP53Q96M91 514 aa31.51■■■□□ 2.63
SMPD3-202ENST00000561749 DOT1LQ8TEK3 1739 aa31.5■■■□□ 2.63
SMPD3-202ENST00000561749 PTF1AQ7RTS3 328 aa31.49■■■□□ 2.63
SMPD3-202ENST00000561749 ACSBG1Q96GR2 724 aa31.49■■■□□ 2.63
SMPD3-202ENST00000561749 BCL9O00512 1426 aa31.49■■■□□ 2.63
SMPD3-202ENST00000561749 NHSQ6T4R5 1651 aa31.48■■■□□ 2.63
SMPD3-202ENST00000561749 U2SURPO15042 1029 aaKnown RBP31.47■■■□□ 2.63
SMPD3-202ENST00000561749 HMOX1P09601 288 aa31.47■■■□□ 2.63
SMPD3-202ENST00000561749 RALBP1Q15311 655 aa31.47■■■□□ 2.63
SMPD3-202ENST00000561749 PCDH11XQ9BZA7 1347 aa31.46■■■□□ 2.63
SMPD3-202ENST00000561749 PCDH11YQ9BZA8 1340 aa31.46■■■□□ 2.63
SMPD3-202ENST00000561749 SPG7Q9UQ90 795 aa31.45■■■□□ 2.63
SMPD3-202ENST00000561749 CYP27B1O15528 508 aa31.44■■■□□ 2.62
SMPD3-202ENST00000561749 KCNQ2O43526 872 aa31.44■■■□□ 2.62
SMPD3-202ENST00000561749 APBA3O96018 575 aa31.44■■■□□ 2.62
SMPD3-202ENST00000561749 BAG6P46379 1132 aa31.44■■■□□ 2.62
SMPD3-202ENST00000561749 KDRP35968 1356 aa31.43■■■□□ 2.62
SMPD3-202ENST00000561749 EN1Q05925 392 aaPredicted RBP31.43■■■□□ 2.62
SMPD3-202ENST00000561749 BTAF1O14981 1849 aa31.42■■■□□ 2.62
SMPD3-202ENST00000561749 BCL11BQ9C0K0 894 aaPredicted RBP31.41■■■□□ 2.62
SMPD3-202ENST00000561749 TOGARAM1Q9Y4F4 1720 aa31.4■■■□□ 2.62
SMPD3-202ENST00000561749 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.39■■■□□ 2.62
SMPD3-202ENST00000561749 MYBBP1AQ9BQG0 1328 aaKnown RBP31.38■■■□□ 2.61
SMPD3-202ENST00000561749 PLEKHO1Q53GL0 409 aaPredicted RBP31.37■■■□□ 2.61
SMPD3-202ENST00000561749 PRKRIP1Q9H875 184 aaPredicted RBP31.37■■■□□ 2.61
SMPD3-202ENST00000561749 ITGB4P16144 1822 aa31.37■■■□□ 2.61
SMPD3-202ENST00000561749 SYTL4Q96C24 671 aaPredicted RBP31.36■■■□□ 2.61
SMPD3-202ENST00000561749 NUDCQ9Y266 331 aa31.36■■■□□ 2.61
SMPD3-202ENST00000561749 EZH2Q15910 746 aaKnown RBP31.35■■■□□ 2.61
SMPD3-202ENST00000561749 PLEKHG2Q9H7P9 1386 aa31.34■■■□□ 2.61
SMPD3-202ENST00000561749 PHKG2P15735 406 aa31.34■■■□□ 2.61
SMPD3-202ENST00000561749 PRIM1P49642 420 aaKnown RBP31.34■■■□□ 2.61
SMPD3-202ENST00000561749 ZNF530Q6P9A1 599 aaPredicted RBP31.34■■■□□ 2.61
SMPD3-202ENST00000561749 U2AF1L5P0DN76 240 aaPredicted RBP31.33■■■□□ 2.61
SMPD3-202ENST00000561749 U2AF1Q01081 240 aaKnown RBP eCLIP31.33■■■□□ 2.61
SMPD3-202ENST00000561749 IFNL2Q8IZJ0 200 aa31.33■■■□□ 2.61
SMPD3-202ENST00000561749 RREB1Q92766 1687 aa31.32■■■□□ 2.6
SMPD3-202ENST00000561749 AMOTQ4VCS5 1084 aa31.32■■■□□ 2.6
SMPD3-202ENST00000561749 CAMKK2Q96RR4 588 aa31.32■■■□□ 2.6
SMPD3-202ENST00000561749 RGPD3A6NKT7 1758 aaPredicted RBP31.32■■■□□ 2.6
SMPD3-202ENST00000561749 RGPD4Q7Z3J3 1758 aa31.32■■■□□ 2.6
SMPD3-202ENST00000561749 VIRMAQ69YN4 1812 aaKnown RBP31.31■■■□□ 2.6
SMPD3-202ENST00000561749 NKX1-1Q15270 411 aaPredicted RBP31.29■■■□□ 2.6
SMPD3-202ENST00000561749 NUP188Q5SRE5 1749 aa31.28■■■□□ 2.6
SMPD3-202ENST00000561749 PRKAR2BP31323 418 aa31.27■■■□□ 2.6
SMPD3-202ENST00000561749 C1orf141Q5JVX7 400 aa31.26■■■□□ 2.59
SMPD3-202ENST00000561749 RSPH6AQ9H0K4 717 aa31.26■■■□□ 2.59
SMPD3-202ENST00000561749 MTHFSDQ2M296 383 aaKnown RBP31.25■■■□□ 2.59
SMPD3-202ENST00000561749 PLSCR1O15162 318 aa31.24■■■□□ 2.59
SMPD3-202ENST00000561749 SCN11AQ9UI33 1791 aa31.24■■■□□ 2.59
SMPD3-202ENST00000561749 MPRIPQ6WCQ1 1025 aa31.23■■■□□ 2.59
SMPD3-202ENST00000561749 KDM6AO15550 1401 aaPredicted RBP31.23■■■□□ 2.59
SMPD3-202ENST00000561749 HSP90AB1P08238 724 aaKnown RBP31.21■■■□□ 2.59
SMPD3-202ENST00000561749 PHACTR3Q96KR7 559 aa31.2■■■□□ 2.59
SMPD3-202ENST00000561749 LY75O60449 1722 aa31.19■■■□□ 2.58
SMPD3-202ENST00000561749 FCHSD2O94868 740 aa31.19■■■□□ 2.58
SMPD3-202ENST00000561749 AKAP4Q5JQC9 854 aa31.19■■■□□ 2.58
SMPD3-202ENST00000561749 DCAF5Q96JK2 942 aa31.19■■■□□ 2.58
SMPD3-202ENST00000561749 ANP32CO43423 234 aa31.18■■■□□ 2.58
SMPD3-202ENST00000561749 PROM2Q8N271 834 aa31.18■■■□□ 2.58
SMPD3-202ENST00000561749 TXNRD1Q16881 649 aa31.17■■■□□ 2.58
SMPD3-202ENST00000561749 PIGBQ92521 554 aa31.17■■■□□ 2.58
SMPD3-202ENST00000561749 TMOD3Q9NYL9 352 aa31.16■■■□□ 2.58
SMPD3-202ENST00000561749 GAS2L2Q8NHY3 880 aa31.14■■■□□ 2.58
SMPD3-202ENST00000561749 LGR6Q9HBX8 967 aa31.13■■■□□ 2.57
SMPD3-202ENST00000561749 DLG5Q8TDM6 1919 aa31.12■■■□□ 2.57
SMPD3-202ENST00000561749 ERVV-2B6SEH9 535 aa31.12■■■□□ 2.57
SMPD3-202ENST00000561749 ADAMTS7Q9UKP4 1686 aa31.12■■■□□ 2.57
SMPD3-202ENST00000561749 KCNQ4P56696 695 aa31.11■■■□□ 2.57
SMPD3-202ENST00000561749 CABP4P57796 275 aa31.11■■■□□ 2.57
SMPD3-202ENST00000561749 CCDC184Q52MB2 194 aa31.11■■■□□ 2.57
SMPD3-202ENST00000561749 MAP3K5Q99683 1374 aa31.11■■■□□ 2.57
SMPD3-202ENST00000561749 RNMTO43148 476 aaKnown RBP31.1■■■□□ 2.57
SMPD3-202ENST00000561749 PALLDQ8WX93 1383 aa31.09■■■□□ 2.57
SMPD3-202ENST00000561749 PSDA5PKW4 1024 aaPredicted RBP31.09■■■□□ 2.57
SMPD3-202ENST00000561749 WDR43Q15061 677 aaKnown RBP eCLIP31.09■■■□□ 2.57
SMPD3-202ENST00000561749 PLEKHF1Q96S99 279 aa31.08■■■□□ 2.57
SMPD3-202ENST00000561749 ASAP1Q9ULH1 1129 aa31.08■■■□□ 2.57
SMPD3-202ENST00000561749 GNAT3A8MTJ3 354 aa31.07■■■□□ 2.56
SMPD3-202ENST00000561749 NEFMP07197 916 aa31.07■■■□□ 2.56
SMPD3-202ENST00000561749 LRRC4BQ9NT99 713 aa31.07■■■□□ 2.56
SMPD3-202ENST00000561749 NFATC2IPQ8NCF5 419 aa31.06■■■□□ 2.56
SMPD3-202ENST00000561749 ANO8Q9HCE9 1232 aaPredicted RBP31.06■■■□□ 2.56
SMPD3-202ENST00000561749 PAPPAQ13219 1627 aa31.06■■■□□ 2.56
SMPD3-202ENST00000561749 R3HDM1Q15032 1099 aaKnown RBP31.05■■■□□ 2.56
SMPD3-202ENST00000561749 NBPF14Q5TI25 921 aa31.05■■■□□ 2.56
SMPD3-202ENST00000561749 CCNL1Q9UK58 526 aaPredicted RBP31.05■■■□□ 2.56
SMPD3-202ENST00000561749 MRC1P22897 1456 aa31.04■■■□□ 2.56
SMPD3-202ENST00000561749 TAF1LQ8IZX4 1826 aa31.04■■■□□ 2.56
SMPD3-202ENST00000561749 SMARCC1Q92922 1105 aaPredicted RBP31.04■■■□□ 2.56
SMPD3-202ENST00000561749 MAPK8IP3Q9UPT6 1336 aa31.03■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms