RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 KAT6BQ8WYB5 2073 aa16.33■□□□□ 0.2
USP3-220ENST00000561381 SLC24A1O60721 1099 aa16.32■□□□□ 0.2
USP3-220ENST00000561381 AMPHP49418 695 aa16.32■□□□□ 0.2
USP3-220ENST00000561381 TMF1P82094 1093 aa16.32■□□□□ 0.2
USP3-220ENST00000561381 GGNBP2Q9H3C7 697 aa16.32■□□□□ 0.2
USP3-220ENST00000561381 STK32BQ9NY57 414 aa16.32■□□□□ 0.2
USP3-220ENST00000561381 FYB1O15117 783 aa16.31■□□□□ 0.2
USP3-220ENST00000561381 RRS1Q15050 365 aaKnown RBP16.31■□□□□ 0.2
USP3-220ENST00000561381 DDX54Q8TDD1 881 aaKnown RBP16.31■□□□□ 0.2
USP3-220ENST00000561381 SLC15A2Q16348 729 aa16.3■□□□□ 0.2
USP3-220ENST00000561381 BTAF1O14981 1849 aa16.3■□□□□ 0.2
USP3-220ENST00000561381 RGPD2P0DJD1 1756 aa16.29■□□□□ 0.2
USP3-220ENST00000561381 FAM208AQ9UK61 1670 aaKnown RBP16.28■□□□□ 0.2
USP3-220ENST00000561381 PTGER2P43116 358 aa16.28■□□□□ 0.2
USP3-220ENST00000561381 LRRC4BQ9NT99 713 aa16.27■□□□□ 0.2
USP3-220ENST00000561381 MEGF6O75095 1541 aa16.26■□□□□ 0.19
USP3-220ENST00000561381 NBPF6Q5VWK0 638 aa16.26■□□□□ 0.19
USP3-220ENST00000561381 USHBP1Q8N6Y0 703 aa16.26■□□□□ 0.19
USP3-220ENST00000561381 NBPF4Q96M43 638 aa16.26■□□□□ 0.19
USP3-220ENST00000561381 PAPPAQ13219 1627 aa16.26■□□□□ 0.19
USP3-220ENST00000561381 MYOM1P52179 1685 aa16.25■□□□□ 0.19
USP3-220ENST00000561381 ZNF827Q17R98 1081 aa16.25■□□□□ 0.19
USP3-220ENST00000561381 CARD14Q9BXL6 1004 aa16.25■□□□□ 0.19
USP3-220ENST00000561381 ZBTB12Q9Y330 459 aaPredicted RBP16.25■□□□□ 0.19
USP3-220ENST00000561381 RTL1A6NKG5 1358 aa16.25■□□□□ 0.19
USP3-220ENST00000561381 PRIM1P49642 420 aaKnown RBP16.24■□□□□ 0.19
USP3-220ENST00000561381 KCNQ4P56696 695 aa16.24■□□□□ 0.19
USP3-220ENST00000561381 ZCRB1Q8TBF4 217 aaKnown RBP16.24■□□□□ 0.19
USP3-220ENST00000561381 SYTL4Q96C24 671 aaPredicted RBP16.24■□□□□ 0.19
USP3-220ENST00000561381 SHANK3Q9BYB0 1731 aa16.24■□□□□ 0.19
USP3-220ENST00000561381 CDCA8Q53HL2 280 aa16.23■□□□□ 0.19
USP3-220ENST00000561381 HSP90AB2PQ58FF8 381 aa16.23■□□□□ 0.19
USP3-220ENST00000561381 MTFR1LQ9H019 292 aa16.23■□□□□ 0.19
USP3-220ENST00000561381 KIF20BQ96Q89 1820 aa16.22■□□□□ 0.19
USP3-220ENST00000561381 SGIP1Q9BQI5 828 aa16.22■□□□□ 0.19
USP3-220ENST00000561381 PCGF6Q9BYE7 350 aa16.22■□□□□ 0.19
USP3-220ENST00000561381 NSD2O96028 1365 aa16.22■□□□□ 0.19
USP3-220ENST00000561381 DOT1LQ8TEK3 1739 aa16.22■□□□□ 0.19
USP3-220ENST00000561381 ATXN8OSP0DMR3 200 aa16.21■□□□□ 0.19
USP3-220ENST00000561381 YY1P25490 414 aa16.21■□□□□ 0.19
USP3-220ENST00000561381 NSD3Q9BZ95 1437 aa16.2■□□□□ 0.18
USP3-220ENST00000561381 CHRDL2Q6WN34 429 aa16.2■□□□□ 0.18
USP3-220ENST00000561381 AKT1S1Q96B36 256 aa16.2■□□□□ 0.18
USP3-220ENST00000561381 FHDC1Q9C0D6 1143 aaPredicted RBP16.2■□□□□ 0.18
USP3-220ENST00000561381 INSRP06213 1382 aa16.19■□□□□ 0.18
USP3-220ENST00000561381 SLC27A3Q5K4L6 730 aa16.19■□□□□ 0.18
USP3-220ENST00000561381 EMILIN1Q9Y6C2 1016 aa16.19■□□□□ 0.18
USP3-220ENST00000561381 SMG6Q86US8 1419 aaKnown RBP16.19■□□□□ 0.18
USP3-220ENST00000561381 FLT4P35916 1363 aa16.18■□□□□ 0.18
USP3-220ENST00000561381 RAPGEF4Q8WZA2 1011 aa16.18■□□□□ 0.18
USP3-220ENST00000561381 SYT17Q9BSW7 474 aa16.18■□□□□ 0.18
USP3-220ENST00000561381 TIMELESSQ9UNS1 1208 aa16.18■□□□□ 0.18
USP3-220ENST00000561381 TATP17735 454 aaPredicted RBP16.16■□□□□ 0.18
USP3-220ENST00000561381 CGNL1Q0VF96 1302 aa16.16■□□□□ 0.18
USP3-220ENST00000561381 PNPLA7Q6ZV29 1317 aa16.16■□□□□ 0.18
USP3-220ENST00000561381 PPM1GO15355 546 aaPredicted RBP16.15■□□□□ 0.18
USP3-220ENST00000561381 LY75O60449 1722 aa16.15■□□□□ 0.18
USP3-220ENST00000561381 ARXQ96QS3 562 aa16.15■□□□□ 0.18
USP3-220ENST00000561381 POLR3GLQ9BT43 218 aa16.15■□□□□ 0.18
USP3-220ENST00000561381 CLSPNQ9HAW4 1339 aa16.15■□□□□ 0.18
USP3-220ENST00000561381 TUBGCP6Q96RT7 1819 aa16.15■□□□□ 0.18
USP3-220ENST00000561381 KIF24Q5T7B8 1368 aa16.14■□□□□ 0.17
USP3-220ENST00000561381 TFCP2L1Q9NZI6 479 aa16.14■□□□□ 0.17
USP3-220ENST00000561381 CCNL1Q9UK58 526 aaPredicted RBP16.14■□□□□ 0.17
USP3-220ENST00000561381 CYP27B1O15528 508 aa16.13■□□□□ 0.17
USP3-220ENST00000561381 PCDH11XQ9BZA7 1347 aa16.13■□□□□ 0.17
USP3-220ENST00000561381 PCDH11YQ9BZA8 1340 aa16.13■□□□□ 0.17
USP3-220ENST00000561381 QSER1Q2KHR3 1735 aa16.12■□□□□ 0.17
USP3-220ENST00000561381 MPRIPQ6WCQ1 1025 aa16.1■□□□□ 0.17
USP3-220ENST00000561381 SLC16A10Q8TF71 515 aa16.1■□□□□ 0.17
USP3-220ENST00000561381 POLKQ9UBT6 870 aa16.1■□□□□ 0.17
USP3-220ENST00000561381 WASHC2AQ641Q2 1341 aa16.1■□□□□ 0.17
USP3-220ENST00000561381 MAP2P11137 1827 aaKnown RBP16.1■□□□□ 0.17
USP3-220ENST00000561381 NCAPD2Q15021 1401 aa16.1■□□□□ 0.17
USP3-220ENST00000561381 ANKRD26Q9UPS8 1709 aa16.09■□□□□ 0.17
USP3-220ENST00000561381 TOGARAM1Q9Y4F4 1720 aa16.09■□□□□ 0.17
USP3-220ENST00000561381 HSPA5P11021 654 aaKnown RBP16.09■□□□□ 0.17
USP3-220ENST00000561381 TNNT2P45379 298 aaPredicted RBP16.09■□□□□ 0.17
USP3-220ENST00000561381 KLHL34Q8N239 644 aa16.09■□□□□ 0.17
USP3-220ENST00000561381 EYA1Q99502 592 aa16.09■□□□□ 0.17
USP3-220ENST00000561381 MAP3K5Q99683 1374 aa16.09■□□□□ 0.17
USP3-220ENST00000561381 COL23A1Q86Y22 540 aaPredicted RBP16.08■□□□□ 0.16
USP3-220ENST00000561381 PALLDQ8WX93 1383 aa16.08■□□□□ 0.16
USP3-220ENST00000561381 COL24A1Q17RW2 1714 aa16.08■□□□□ 0.16
USP3-220ENST00000561381 PKD1L3Q7Z443 1732 aa16.08■□□□□ 0.16
USP3-220ENST00000561381 POLD1P28340 1107 aa16.07■□□□□ 0.16
USP3-220ENST00000561381 EIF4G2P78344 907 aaKnown RBP eCLIP16.07■□□□□ 0.16
USP3-220ENST00000561381 UTRNP46939 3433 aa16.06■□□□□ 0.16
USP3-220ENST00000561381 ITGB4P16144 1822 aa16.06■□□□□ 0.16
USP3-220ENST00000561381 PIGBQ92521 554 aa16.06■□□□□ 0.16
USP3-220ENST00000561381 EIF4A2Q14240 407 aaKnown RBP16.05■□□□□ 0.16
USP3-220ENST00000561381 NKX1-1Q15270 411 aaPredicted RBP16.05■□□□□ 0.16
USP3-220ENST00000561381 MSL1Q68DK7 614 aa16.05■□□□□ 0.16
USP3-220ENST00000561381 PANK3Q9H999 370 aa16.05■□□□□ 0.16
USP3-220ENST00000561381 C5P01031 1676 aa16.05■□□□□ 0.16
USP3-220ENST00000561381 NLGN2Q8NFZ4 835 aa16.04■□□□□ 0.16
USP3-220ENST00000561381 CCER1Q8TC90 406 aaPredicted RBP16.04■□□□□ 0.16
USP3-220ENST00000561381 SPG7Q9UQ90 795 aa16.04■□□□□ 0.16
USP3-220ENST00000561381 TAF1LQ8IZX4 1826 aa16.03■□□□□ 0.16
USP3-220ENST00000561381 GPR162Q16538 588 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms