RNA–Protein interactions for RNA: ENST00000560897.1

HERC1-210, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 539 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-210ENST00000560897 ERBB3P21860 1342 aa13.9□□□□□ -0.18
HERC1-210ENST00000560897 FLAD1Q8NFF5 587 aa13.9□□□□□ -0.18
HERC1-210ENST00000560897 RBM46Q8TBY0 533 aaKnown RBP13.9□□□□□ -0.18
HERC1-210ENST00000560897 HTRA3P83110 453 aa13.89□□□□□ -0.19
HERC1-210ENST00000560897 NFAT5O94916 1531 aa13.89□□□□□ -0.19
HERC1-210ENST00000560897 CENPJQ9HC77 1338 aaPredicted RBP13.89□□□□□ -0.19
HERC1-210ENST00000560897 PRIM1P49642 420 aaKnown RBP13.88□□□□□ -0.19
HERC1-210ENST00000560897 TTC21BQ7Z4L5 1316 aa13.88□□□□□ -0.19
HERC1-210ENST00000560897 TTC21AQ8NDW8 1320 aa13.88□□□□□ -0.19
HERC1-210ENST00000560897 DOT1LQ8TEK3 1739 aa13.87□□□□□ -0.19
HERC1-210ENST00000560897 ANKRD36BQ8N2N9 1353 aa13.87□□□□□ -0.19
HERC1-210ENST00000560897 USP47Q96K76 1375 aa13.87□□□□□ -0.19
HERC1-210ENST00000560897 FSTL1Q12841 308 aa13.87□□□□□ -0.19
HERC1-210ENST00000560897 ZNF692Q9BU19 519 aaPredicted RBP13.87□□□□□ -0.19
HERC1-210ENST00000560897 NMRK2Q9NPI5 230 aa13.86□□□□□ -0.19
HERC1-210ENST00000560897 CICQ96RK0 1608 aaPredicted RBP13.86□□□□□ -0.19
HERC1-210ENST00000560897 ANKRD24Q8TF21 1146 aa13.85□□□□□ -0.19
HERC1-210ENST00000560897 C5P01031 1676 aa13.85□□□□□ -0.19
HERC1-210ENST00000560897 KIAA1210Q9ULL0 1709 aa13.84□□□□□ -0.19
HERC1-210ENST00000560897 LTN1O94822 1766 aa13.83□□□□□ -0.19
HERC1-210ENST00000560897 HSPA1AP0DMV8 641 aaKnown RBP13.83□□□□□ -0.2
HERC1-210ENST00000560897 HSPA1BP0DMV9 641 aaKnown RBP13.83□□□□□ -0.2
HERC1-210ENST00000560897 PCDH10Q9P2E7 1040 aa13.82□□□□□ -0.2
HERC1-210ENST00000560897 PCNTO95613 3336 aa13.82□□□□□ -0.2
HERC1-210ENST00000560897 PLEKHG2Q9H7P9 1386 aa13.82□□□□□ -0.2
HERC1-210ENST00000560897 AK7Q96M32 723 aa13.81□□□□□ -0.2
HERC1-210ENST00000560897 BCS1LQ9Y276 419 aa13.81□□□□□ -0.2
HERC1-210ENST00000560897 EVC2Q86UK5 1308 aa13.81□□□□□ -0.2
HERC1-210ENST00000560897 NSD2O96028 1365 aa13.81□□□□□ -0.2
HERC1-210ENST00000560897 NSD3Q9BZ95 1437 aa13.81□□□□□ -0.2
HERC1-210ENST00000560897 FAM208AQ9UK61 1670 aaKnown RBP13.8□□□□□ -0.2
HERC1-210ENST00000560897 ARHGAP27Q6ZUM4 889 aa13.8□□□□□ -0.2
HERC1-210ENST00000560897 KDM2BQ8NHM5 1336 aa13.8□□□□□ -0.2
HERC1-210ENST00000560897 KTN1Q86UP2 1357 aaKnown RBP13.8□□□□□ -0.2
HERC1-210ENST00000560897 PHF14O94880 888 aa13.79□□□□□ -0.2
HERC1-210ENST00000560897 SMC1BQ8NDV3 1235 aa13.79□□□□□ -0.2
HERC1-210ENST00000560897 USP54Q70EL1 1684 aa13.79□□□□□ -0.2
HERC1-210ENST00000560897 ZCRB1Q8TBF4 217 aaKnown RBP13.78□□□□□ -0.2
HERC1-210ENST00000560897 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.77□□□□□ -0.21
HERC1-210ENST00000560897 TAF1LQ8IZX4 1826 aa13.77□□□□□ -0.21
HERC1-210ENST00000560897 LTV1Q96GA3 475 aaPredicted RBP13.77□□□□□ -0.21
HERC1-210ENST00000560897 NBPF1Q3BBV0 1214 aa13.76□□□□□ -0.21
HERC1-210ENST00000560897 C4BP0C0L5 1744 aa13.76□□□□□ -0.21
HERC1-210ENST00000560897 PALLDQ8WX93 1383 aa13.75□□□□□ -0.21
HERC1-210ENST00000560897 C9orf131Q5VYM1 1079 aa13.75□□□□□ -0.21
HERC1-210ENST00000560897 TNRC6CQ9HCJ0 1690 aaKnown RBP13.75□□□□□ -0.21
HERC1-210ENST00000560897 KCPQ6ZWJ8 1503 aa13.74□□□□□ -0.21
HERC1-210ENST00000560897 C10orf71Q711Q0 1435 aa13.74□□□□□ -0.21
HERC1-210ENST00000560897 USP31Q70CQ4 1352 aa13.74□□□□□ -0.21
HERC1-210ENST00000560897 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.74□□□□□ -0.21
HERC1-210ENST00000560897 FCHSD2O94868 740 aa13.74□□□□□ -0.21
HERC1-210ENST00000560897 TGFB2P61812 414 aa13.74□□□□□ -0.21
HERC1-210ENST00000560897 RRAGCQ9HB90 399 aa13.74□□□□□ -0.21
HERC1-210ENST00000560897 PXDNLA1KZ92 1463 aa13.74□□□□□ -0.21
HERC1-210ENST00000560897 N4BP2Q86UW6 1770 aaPredicted RBP13.73□□□□□ -0.21
HERC1-210ENST00000560897 MON2Q7Z3U7 1717 aa13.73□□□□□ -0.21
HERC1-210ENST00000560897 PKD1L3Q7Z443 1732 aa13.73□□□□□ -0.21
HERC1-210ENST00000560897 SSFA2P28290 1259 aa13.73□□□□□ -0.21
HERC1-210ENST00000560897 UBR3Q6ZT12 1888 aa13.73□□□□□ -0.21
HERC1-210ENST00000560897 NME9Q86XW9 330 aa13.72□□□□□ -0.21
HERC1-210ENST00000560897 SMARCC1Q92922 1105 aaPredicted RBP13.72□□□□□ -0.21
HERC1-210ENST00000560897 MMP10P09238 476 aa13.71□□□□□ -0.21
HERC1-210ENST00000560897 IP6K1Q92551 441 aa13.71□□□□□ -0.21
HERC1-210ENST00000560897 KIF13BQ9NQT8 1826 aa13.71□□□□□ -0.22
HERC1-210ENST00000560897 RAB3GAP2Q9H2M9 1393 aa13.71□□□□□ -0.22
HERC1-210ENST00000560897 TOGARAM1Q9Y4F4 1720 aa13.7□□□□□ -0.22
HERC1-210ENST00000560897 A0A0G2JLW4 131 aa13.7□□□□□ -0.22
HERC1-210ENST00000560897 MPRIPQ6WCQ1 1025 aa13.7□□□□□ -0.22
HERC1-210ENST00000560897 RNF181Q9P0P0 153 aa13.7□□□□□ -0.22
HERC1-210ENST00000560897 CGNL1Q0VF96 1302 aa13.69□□□□□ -0.22
HERC1-210ENST00000560897 CCDC87Q9NVE4 849 aa13.69□□□□□ -0.22
HERC1-210ENST00000560897 MEGF6O75095 1541 aa13.69□□□□□ -0.22
HERC1-210ENST00000560897 AMIGO3Q86WK7 504 aa13.68□□□□□ -0.22
HERC1-210ENST00000560897 RAPGEF4Q8WZA2 1011 aa13.68□□□□□ -0.22
HERC1-210ENST00000560897 KIAA1551Q9HCM1 1747 aa13.67□□□□□ -0.22
HERC1-210ENST00000560897 ARFGEF1Q9Y6D6 1849 aa13.67□□□□□ -0.22
HERC1-210ENST00000560897 GNPATO15228 680 aa13.67□□□□□ -0.22
HERC1-210ENST00000560897 DPEP1P16444 411 aa13.67□□□□□ -0.22
HERC1-210ENST00000560897 AMPHP49418 695 aa13.67□□□□□ -0.22
HERC1-210ENST00000560897 FAM161AQ3B820 660 aa13.67□□□□□ -0.22
HERC1-210ENST00000560897 SMIM5Q71RC9 77 aa13.67□□□□□ -0.22
HERC1-210ENST00000560897 HDGFL2Q7Z4V5 671 aaPredicted RBP13.67□□□□□ -0.22
HERC1-210ENST00000560897 PCDH11XQ9BZA7 1347 aa13.66□□□□□ -0.22
HERC1-210ENST00000560897 PCDH11YQ9BZA8 1340 aa13.66□□□□□ -0.22
HERC1-210ENST00000560897 AIDAQ96BJ3 306 aa13.66□□□□□ -0.22
HERC1-210ENST00000560897 RGPD2P0DJD1 1756 aa13.66□□□□□ -0.22
HERC1-210ENST00000560897 BRCA1P38398 1863 aaKnown RBP13.65□□□□□ -0.22
HERC1-210ENST00000560897 TATP17735 454 aaPredicted RBP13.65□□□□□ -0.22
HERC1-210ENST00000560897 PRDM10Q9NQV6 1147 aa13.65□□□□□ -0.22
HERC1-210ENST00000560897 SBNO2Q9Y2G9 1366 aa13.64□□□□□ -0.23
HERC1-210ENST00000560897 DALRD3Q5D0E6 543 aaKnown RBP13.64□□□□□ -0.23
HERC1-210ENST00000560897 NLGN1Q8N2Q7 840 aa13.64□□□□□ -0.23
HERC1-210ENST00000560897 TMC1Q8TDI8 760 aa13.64□□□□□ -0.23
HERC1-210ENST00000560897 PIM2Q9P1W9 311 aa13.64□□□□□ -0.23
HERC1-210ENST00000560897 SMG6Q86US8 1419 aaKnown RBP13.64□□□□□ -0.23
HERC1-210ENST00000560897 VEGFAP15692 232 aaPredicted RBP13.63□□□□□ -0.23
HERC1-210ENST00000560897 HOXC9P31274 260 aa13.63□□□□□ -0.23
HERC1-210ENST00000560897 TMF1P82094 1093 aa13.63□□□□□ -0.23
HERC1-210ENST00000560897 PARP3Q9Y6F1 533 aa13.63□□□□□ -0.23
HERC1-210ENST00000560897 EDC4Q6P2E9 1401 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms