RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 EIF5P55010 431 aaKnown RBP15.49■□□□□ 0.07
CSPG4P11-201ENST00000560634 CCDC148Q8NFR7 591 aa15.49■□□□□ 0.07
CSPG4P11-201ENST00000560634 CENPHQ9H3R5 247 aa15.49■□□□□ 0.07
CSPG4P11-201ENST00000560634 SFPQP23246 707 aaKnown RBP eCLIP15.49■□□□□ 0.07
CSPG4P11-201ENST00000560634 CCDC102AQ96A19 550 aa15.49■□□□□ 0.07
CSPG4P11-201ENST00000560634 SCAND2PQ9GZW5 306 aaPredicted RBP15.49■□□□□ 0.07
CSPG4P11-201ENST00000560634 SIL1Q9H173 461 aa15.49■□□□□ 0.07
CSPG4P11-201ENST00000560634 DESP17661 470 aa15.48■□□□□ 0.07
CSPG4P11-201ENST00000560634 IMMTQ16891 758 aaKnown RBP15.48■□□□□ 0.07
CSPG4P11-201ENST00000560634 SPG7Q9UQ90 795 aa15.48■□□□□ 0.07
CSPG4P11-201ENST00000560634 CABP4P57796 275 aa15.48■□□□□ 0.07
CSPG4P11-201ENST00000560634 CRACR2AQ9BSW2 395 aa15.48■□□□□ 0.07
CSPG4P11-201ENST00000560634 RAD54L2Q9Y4B4 1467 aa15.48■□□□□ 0.07
CSPG4P11-201ENST00000560634 NBPF1Q3BBV0 1214 aa15.48■□□□□ 0.07
CSPG4P11-201ENST00000560634 CFAP100Q494V2 611 aa15.48■□□□□ 0.07
CSPG4P11-201ENST00000560634 MPNDQ8N594 471 aa15.48■□□□□ 0.07
CSPG4P11-201ENST00000560634 ATP2B2Q01814 1243 aa15.47■□□□□ 0.07
CSPG4P11-201ENST00000560634 FAM69CQ0P6D2 419 aa15.47■□□□□ 0.07
CSPG4P11-201ENST00000560634 ESCO1Q5FWF5 840 aa15.47■□□□□ 0.07
CSPG4P11-201ENST00000560634 JAKMIP3Q5VZ66 844 aa15.47■□□□□ 0.07
CSPG4P11-201ENST00000560634 KIAA1328Q86T90 577 aa15.47■□□□□ 0.07
CSPG4P11-201ENST00000560634 ZNF397Q8NF99 534 aaPredicted RBP15.47■□□□□ 0.07
CSPG4P11-201ENST00000560634 CETN2P41208 172 aa15.47■□□□□ 0.07
CSPG4P11-201ENST00000560634 TXNDC2Q86VQ3 553 aa15.47■□□□□ 0.07
CSPG4P11-201ENST00000560634 PTPN14Q15678 1187 aa15.47■□□□□ 0.07
CSPG4P11-201ENST00000560634 CWC27Q6UX04 472 aaKnown RBP15.47■□□□□ 0.07
CSPG4P11-201ENST00000560634 TDO2P48775 406 aa15.46■□□□□ 0.07
CSPG4P11-201ENST00000560634 FKBP4Q02790 459 aaKnown RBP eCLIP15.46■□□□□ 0.07
CSPG4P11-201ENST00000560634 ANO10Q9NW15 660 aa15.46■□□□□ 0.07
CSPG4P11-201ENST00000560634 SLC52A1Q9NWF4 448 aa15.46■□□□□ 0.07
CSPG4P11-201ENST00000560634 GLRX3O76003 335 aaKnown RBP15.46■□□□□ 0.07
CSPG4P11-201ENST00000560634 MCM3P25205 808 aa15.46■□□□□ 0.07
CSPG4P11-201ENST00000560634 GBP2P32456 591 aaPredicted RBP15.46■□□□□ 0.07
CSPG4P11-201ENST00000560634 MAP9Q49MG5 647 aa15.46■□□□□ 0.07
CSPG4P11-201ENST00000560634 KIF18AQ8NI77 898 aa15.46■□□□□ 0.07
CSPG4P11-201ENST00000560634 KIAA1107Q9UPP5 1409 aa15.45■□□□□ 0.06
CSPG4P11-201ENST00000560634 SSBP05455 408 aaKnown RBP eCLIP15.45■□□□□ 0.06
CSPG4P11-201ENST00000560634 CABP1Q9NZU7 370 aa15.45■□□□□ 0.06
CSPG4P11-201ENST00000560634 U3KPZ7 1027 aaPredicted RBP15.45■□□□□ 0.06
CSPG4P11-201ENST00000560634 ANKRD30BQ9BXX2 1392 aa15.45■□□□□ 0.06
CSPG4P11-201ENST00000560634 KIF1BPQ96EK5 621 aa15.45■□□□□ 0.06
CSPG4P11-201ENST00000560634 CDK19Q9BWU1 502 aa15.45■□□□□ 0.06
CSPG4P11-201ENST00000560634 SH2B1Q9NRF2 756 aaPredicted RBP15.45■□□□□ 0.06
CSPG4P11-201ENST00000560634 RAB11FIP3O75154 756 aa15.45■□□□□ 0.06
CSPG4P11-201ENST00000560634 ATAD2Q6PL18 1390 aa15.44■□□□□ 0.06
CSPG4P11-201ENST00000560634 PPP1R12BO60237 982 aaPredicted RBP15.44■□□□□ 0.06
CSPG4P11-201ENST00000560634 SLFN5Q08AF3 891 aa15.44■□□□□ 0.06
CSPG4P11-201ENST00000560634 SYCE3A1L190 88 aa15.44■□□□□ 0.06
CSPG4P11-201ENST00000560634 FAM193AP78312 1265 aa15.44■□□□□ 0.06
CSPG4P11-201ENST00000560634 AEBP2Q6ZN18 517 aaPredicted RBP15.44■□□□□ 0.06
CSPG4P11-201ENST00000560634 AFAP1Q8N556 730 aa15.44■□□□□ 0.06
CSPG4P11-201ENST00000560634 KIF21BO75037 1637 aa15.44■□□□□ 0.06
CSPG4P11-201ENST00000560634 CCDC183Q5T5S1 534 aa15.43■□□□□ 0.06
CSPG4P11-201ENST00000560634 CTAGE5O15320 804 aa15.43■□□□□ 0.06
CSPG4P11-201ENST00000560634 MAP4K4O95819 1239 aaPredicted RBP15.43■□□□□ 0.06
CSPG4P11-201ENST00000560634 POTEJP0CG39 1038 aa15.43■□□□□ 0.06
CSPG4P11-201ENST00000560634 SPA17Q15506 151 aa15.43■□□□□ 0.06
CSPG4P11-201ENST00000560634 NFE2L2Q16236 605 aa15.43■□□□□ 0.06
CSPG4P11-201ENST00000560634 IL1RAPL2Q9NP60 686 aa15.43■□□□□ 0.06
CSPG4P11-201ENST00000560634 PROSER2Q86WR7 435 aaPredicted RBP15.43■□□□□ 0.06
CSPG4P11-201ENST00000560634 PLEKHH1Q9ULM0 1364 aa15.43■□□□□ 0.06
CSPG4P11-201ENST00000560634 CCDC196A0A1B0GTZ2 297 aa15.43■□□□□ 0.06
CSPG4P11-201ENST00000560634 NEMFO60524 1076 aa15.43■□□□□ 0.06
CSPG4P11-201ENST00000560634 RPGRIP1LQ68CZ1 1315 aa15.43■□□□□ 0.06
CSPG4P11-201ENST00000560634 SHTN1A0MZ66 631 aa15.42■□□□□ 0.06
CSPG4P11-201ENST00000560634 CASTP20810 708 aaKnown RBP15.42■□□□□ 0.06
CSPG4P11-201ENST00000560634 SEPT11Q9NVA2 429 aaKnown RBP15.42■□□□□ 0.06
CSPG4P11-201ENST00000560634 KIF5CO60282 957 aa15.42■□□□□ 0.06
CSPG4P11-201ENST00000560634 ZNF287Q9HBT7 754 aa15.42■□□□□ 0.06
CSPG4P11-201ENST00000560634 NBPF8Q3BBV2 869 aa15.41■□□□□ 0.06
CSPG4P11-201ENST00000560634 PHAXQ9H814 394 aaKnown RBP15.41■□□□□ 0.06
CSPG4P11-201ENST00000560634 CFTRP13569 1480 aa15.41■□□□□ 0.06
CSPG4P11-201ENST00000560634 CCDC83Q8IWF9 413 aa15.41■□□□□ 0.06
CSPG4P11-201ENST00000560634 KLHL34Q8N239 644 aa15.41■□□□□ 0.06
CSPG4P11-201ENST00000560634 ERBINQ96RT1 1412 aa15.41■□□□□ 0.06
CSPG4P11-201ENST00000560634 HMGB1P09429 215 aaKnown RBP15.41■□□□□ 0.06
CSPG4P11-201ENST00000560634 VPS36Q86VN1 386 aa15.41■□□□□ 0.06
CSPG4P11-201ENST00000560634 THEMISQ8N1K5 641 aaPredicted RBP15.41■□□□□ 0.06
CSPG4P11-201ENST00000560634 TMEM57Q8N5G2 664 aa15.41■□□□□ 0.06
CSPG4P11-201ENST00000560634 SLC26A8Q96RN1 970 aa15.41■□□□□ 0.06
CSPG4P11-201ENST00000560634 MX1P20591 662 aa15.4■□□□□ 0.06
CSPG4P11-201ENST00000560634 FKBP15Q5T1M5 1219 aa15.4■□□□□ 0.06
CSPG4P11-201ENST00000560634 STK11IPQ8N1F8 1099 aa15.4■□□□□ 0.06
CSPG4P11-201ENST00000560634 AIDAQ96BJ3 306 aa15.4■□□□□ 0.06
CSPG4P11-201ENST00000560634 LRP2BPQ9P2M1 347 aa15.4■□□□□ 0.06
CSPG4P11-201ENST00000560634 HMGB2P26583 209 aaKnown RBP15.4■□□□□ 0.06
CSPG4P11-201ENST00000560634 TMPOP42166 694 aaKnown RBP15.4■□□□□ 0.06
CSPG4P11-201ENST00000560634 RAI14Q9P0K7 980 aa15.4■□□□□ 0.06
CSPG4P11-201ENST00000560634 AKAP2Q9Y2D5 859 aa15.4■□□□□ 0.06
CSPG4P11-201ENST00000560634 CCDC91Q7Z6B0 441 aa15.4■□□□□ 0.06
CSPG4P11-201ENST00000560634 ALDH1L2Q3SY69 923 aa15.4■□□□□ 0.06
CSPG4P11-201ENST00000560634 FGFR1OPO95684 399 aaKnown RBP15.39■□□□□ 0.05
CSPG4P11-201ENST00000560634 MYL6BP14649 208 aa15.39■□□□□ 0.05
CSPG4P11-201ENST00000560634 DDX11Q96FC9 970 aa15.39■□□□□ 0.05
CSPG4P11-201ENST00000560634 RTEL1-TNFRSF6BF6WH68 1400 aa15.39■□□□□ 0.05
CSPG4P11-201ENST00000560634 AQRO60306 1485 aaKnown RBP eCLIP15.39■□□□□ 0.05
CSPG4P11-201ENST00000560634 ZNF76P36508 570 aa15.39■□□□□ 0.05
CSPG4P11-201ENST00000560634 KIF4BQ2VIQ3 1234 aa15.39■□□□□ 0.05
CSPG4P11-201ENST00000560634 PLEKHH2Q8IVE3 1493 aa15.39■□□□□ 0.05
CSPG4P11-201ENST00000560634 BTBD11A6QL63 1104 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms