RNA–Protein interactions for RNA: ENST00000559819.5

LRRC28-216, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 2,712 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-216ENST00000559819 RGPD1P0DJD0 1748 aa12.54□□□□□ -0.4
LRRC28-216ENST00000559819 NALCNQ8IZF0 1738 aa12.54□□□□□ -0.4
LRRC28-216ENST00000559819 APBB1O00213 710 aa12.53□□□□□ -0.4
LRRC28-216ENST00000559819 OTUD7AQ8TE49 926 aaPredicted RBP12.53□□□□□ -0.4
LRRC28-216ENST00000559819 NUTM2GQ5VZR2 741 aa12.53□□□□□ -0.4
LRRC28-216ENST00000559819 PLEKHM2Q8IWE5 1019 aa12.53□□□□□ -0.4
LRRC28-216ENST00000559819 RBM42Q9BTD8 480 aaKnown RBP12.53□□□□□ -0.4
LRRC28-216ENST00000559819 ATP10DQ9P241 1426 aa12.53□□□□□ -0.4
LRRC28-216ENST00000559819 CD2BP2O95400 341 aaKnown RBP12.53□□□□□ -0.4
LRRC28-216ENST00000559819 MCM4P33991 863 aa12.53□□□□□ -0.4
LRRC28-216ENST00000559819 G2E3Q7L622 706 aa12.53□□□□□ -0.4
LRRC28-216ENST00000559819 MEIS3Q99687 375 aa12.53□□□□□ -0.4
LRRC28-216ENST00000559819 DCTPP1Q9H773 170 aa12.53□□□□□ -0.4
LRRC28-216ENST00000559819 KIF24Q5T7B8 1368 aa12.52□□□□□ -0.41
LRRC28-216ENST00000559819 SMARCA5O60264 1052 aaPredicted RBP12.52□□□□□ -0.41
LRRC28-216ENST00000559819 SLC4A2P04920 1241 aa12.52□□□□□ -0.41
LRRC28-216ENST00000559819 CEP85Q6P2H3 762 aa12.52□□□□□ -0.41
LRRC28-216ENST00000559819 FOXD4L1Q9NU39 408 aa12.52□□□□□ -0.41
LRRC28-216ENST00000559819 ARHGEF10O15013 1369 aa12.52□□□□□ -0.41
LRRC28-216ENST00000559819 KIAA0232Q92628 1395 aa12.52□□□□□ -0.41
LRRC28-216ENST00000559819 ANKRD44Q8N8A2 993 aa12.52□□□□□ -0.41
LRRC28-216ENST00000559819 ARXQ96QS3 562 aa12.52□□□□□ -0.41
LRRC28-216ENST00000559819 EYA1Q99502 592 aa12.52□□□□□ -0.41
LRRC28-216ENST00000559819 TSPYL4Q9UJ04 414 aa12.52□□□□□ -0.41
LRRC28-216ENST00000559819 F6X3S4 739 aa12.51□□□□□ -0.41
LRRC28-216ENST00000559819 AMPHP49418 695 aa12.51□□□□□ -0.41
LRRC28-216ENST00000559819 CEP170BQ9Y4F5 1589 aaPredicted RBP12.51□□□□□ -0.41
LRRC28-216ENST00000559819 RTL1A6NKG5 1358 aa12.51□□□□□ -0.41
LRRC28-216ENST00000559819 SNX21Q969T3 373 aa12.51□□□□□ -0.41
LRRC28-216ENST00000559819 SBNO1A3KN83 1393 aa12.5□□□□□ -0.41
LRRC28-216ENST00000559819 DIP2AQ14689 1571 aa12.5□□□□□ -0.41
LRRC28-216ENST00000559819 TTC21AQ8NDW8 1320 aa12.5□□□□□ -0.41
LRRC28-216ENST00000559819 CDC45O75419 566 aa12.5□□□□□ -0.41
LRRC28-216ENST00000559819 HSP90AB1P08238 724 aaKnown RBP12.5□□□□□ -0.41
LRRC28-216ENST00000559819 RTF1Q92541 710 aaKnown RBP12.5□□□□□ -0.41
LRRC28-216ENST00000559819 GZF1Q9H116 711 aaPredicted RBP12.5□□□□□ -0.41
LRRC28-216ENST00000559819 NCOA3Q9Y6Q9 1424 aa12.5□□□□□ -0.41
LRRC28-216ENST00000559819 FLT4P35916 1363 aa12.5□□□□□ -0.41
LRRC28-216ENST00000559819 SLC4A10Q6U841 1118 aa12.5□□□□□ -0.41
LRRC28-216ENST00000559819 TBX22Q9Y458 520 aa12.5□□□□□ -0.41
LRRC28-216ENST00000559819 RGPD8O14715 1765 aaPredicted RBP12.5□□□□□ -0.41
LRRC28-216ENST00000559819 PTPRCP08575 1304 aa12.49□□□□□ -0.41
LRRC28-216ENST00000559819 DDIT3P35638 169 aa12.49□□□□□ -0.41
LRRC28-216ENST00000559819 NLRP6P59044 892 aa12.49□□□□□ -0.41
LRRC28-216ENST00000559819 TTC22Q5TAA0 569 aa12.49□□□□□ -0.41
LRRC28-216ENST00000559819 HAP1P54257 671 aaPredicted RBP12.48□□□□□ -0.41
LRRC28-216ENST00000559819 NECTIN2Q92692 538 aa12.48□□□□□ -0.41
LRRC28-216ENST00000559819 ARHGAP23Q9P227 1491 aa12.48□□□□□ -0.41
LRRC28-216ENST00000559819 SLIT1O75093 1534 aa12.48□□□□□ -0.41
LRRC28-216ENST00000559819 RPAP2Q8IXW5 612 aaPredicted RBP12.48□□□□□ -0.41
LRRC28-216ENST00000559819 LTV1Q96GA3 475 aaPredicted RBP12.48□□□□□ -0.41
LRRC28-216ENST00000559819 FMN2Q9NZ56 1722 aa12.48□□□□□ -0.41
LRRC28-216ENST00000559819 PIK3C2AO00443 1686 aa12.48□□□□□ -0.41
LRRC28-216ENST00000559819 IGSF1Q8N6C5 1336 aa12.48□□□□□ -0.41
LRRC28-216ENST00000559819 KCNA6P17658 529 aa12.47□□□□□ -0.41
LRRC28-216ENST00000559819 KDRP35968 1356 aa12.47□□□□□ -0.41
LRRC28-216ENST00000559819 TRAK2O60296 914 aa12.46□□□□□ -0.41
LRRC28-216ENST00000559819 TRHP20396 242 aaPredicted RBP12.46□□□□□ -0.41
LRRC28-216ENST00000559819 USHBP1Q8N6Y0 703 aa12.46□□□□□ -0.42
LRRC28-216ENST00000559819 GAS2L2Q8NHY3 880 aa12.46□□□□□ -0.42
LRRC28-216ENST00000559819 TNPO1Q92973 898 aaKnown RBP12.46□□□□□ -0.42
LRRC28-216ENST00000559819 K7ELQ4 463 aaPredicted RBP12.45□□□□□ -0.42
LRRC28-216ENST00000559819 SDSP20132 328 aa12.45□□□□□ -0.42
LRRC28-216ENST00000559819 HOXC9P31274 260 aa12.45□□□□□ -0.42
LRRC28-216ENST00000559819 THEMISQ8N1K5 641 aaPredicted RBP12.45□□□□□ -0.42
LRRC28-216ENST00000559819 RBM33Q96EV2 1170 aaKnown RBP12.45□□□□□ -0.42
LRRC28-216ENST00000559819 C14orf37Q86TY3 774 aa12.45□□□□□ -0.42
LRRC28-216ENST00000559819 HSP90AA1P07900 732 aaKnown RBP12.44□□□□□ -0.42
LRRC28-216ENST00000559819 ABTB2Q8N961 1025 aa12.43□□□□□ -0.42
LRRC28-216ENST00000559819 GNAT3A8MTJ3 354 aa12.43□□□□□ -0.42
LRRC28-216ENST00000559819 TSHZ3Q63HK5 1081 aa12.43□□□□□ -0.42
LRRC28-216ENST00000559819 IL17REQ8NFR9 667 aa12.43□□□□□ -0.42
LRRC28-216ENST00000559819 EXOC6BQ9Y2D4 811 aa12.43□□□□□ -0.42
LRRC28-216ENST00000559819 CCT4P50991 539 aaKnown RBP12.42□□□□□ -0.42
LRRC28-216ENST00000559819 FLIIQ13045 1269 aa12.42□□□□□ -0.42
LRRC28-216ENST00000559819 RAB3GAP1Q15042 981 aa12.42□□□□□ -0.42
LRRC28-216ENST00000559819 STK31Q9BXU1 1019 aa12.42□□□□□ -0.42
LRRC28-216ENST00000559819 USP26Q9BXU7 913 aa12.42□□□□□ -0.42
LRRC28-216ENST00000559819 NWD1Q149M9 1564 aa12.42□□□□□ -0.42
LRRC28-216ENST00000559819 XRN1Q8IZH2 1706 aaKnown RBP12.42□□□□□ -0.42
LRRC28-216ENST00000559819 FKBP5Q13451 457 aaPredicted RBP12.42□□□□□ -0.42
LRRC28-216ENST00000559819 FER1L4A9Z1Z3 1794 aa12.42□□□□□ -0.42
LRRC28-216ENST00000559819 L1TD1Q5T7N2 865 aaKnown RBP12.41□□□□□ -0.42
LRRC28-216ENST00000559819 GOLGA6L3A6NEY3 463 aa12.41□□□□□ -0.42
LRRC28-216ENST00000559819 DDX11L8A8MPP1 907 aa12.41□□□□□ -0.42
LRRC28-216ENST00000559819 XRCC6P12956 609 aaKnown RBP eCLIP12.41□□□□□ -0.42
LRRC28-216ENST00000559819 SSFA2P28290 1259 aa12.41□□□□□ -0.42
LRRC28-216ENST00000559819 CIZ1Q9ULV3 898 aaPredicted RBP12.41□□□□□ -0.42
LRRC28-216ENST00000559819 MARF1Q9Y4F3 1742 aaKnown RBP12.41□□□□□ -0.42
LRRC28-216ENST00000559819 FSD2A1L4K1 749 aa12.4□□□□□ -0.42
LRRC28-216ENST00000559819 ZBTB7CA1YPR0 619 aa12.4□□□□□ -0.42
LRRC28-216ENST00000559819 HMMRO75330 724 aa12.4□□□□□ -0.42
LRRC28-216ENST00000559819 GNAI2P04899 355 aa12.4□□□□□ -0.42
LRRC28-216ENST00000559819 ANKARQ7Z5J8 1434 aa12.4□□□□□ -0.42
LRRC28-216ENST00000559819 PNMA6EA0A0J9YXQ4 647 aa12.4□□□□□ -0.42
LRRC28-216ENST00000559819 PANK2Q9BZ23 570 aa12.4□□□□□ -0.42
LRRC28-216ENST00000559819 LRRC37A3O60309 1634 aa12.4□□□□□ -0.42
LRRC28-216ENST00000559819 MAP3K5Q99683 1374 aa12.4□□□□□ -0.43
LRRC28-216ENST00000559819 PLEKHG5O94827 1062 aa12.39□□□□□ -0.43
LRRC28-216ENST00000559819 CCDC30Q5VVM6 783 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms