RNA–Protein interactions for RNA: ENST00000559460.5

SMAD3-211, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-211ENST00000559460 TTC21AQ8NDW8 1320 aa14.07□□□□□ -0.16
SMAD3-211ENST00000559460 CENPJQ9HC77 1338 aaPredicted RBP14.07□□□□□ -0.16
SMAD3-211ENST00000559460 USP47Q96K76 1375 aa14.07□□□□□ -0.16
SMAD3-211ENST00000559460 PRIM1P49642 420 aaKnown RBP14.06□□□□□ -0.16
SMAD3-211ENST00000559460 HTRA3P83110 453 aa14.06□□□□□ -0.16
SMAD3-211ENST00000559460 ZNF692Q9BU19 519 aaPredicted RBP14.06□□□□□ -0.16
SMAD3-211ENST00000559460 TTC21BQ7Z4L5 1316 aa14.06□□□□□ -0.16
SMAD3-211ENST00000559460 ANKRD36BQ8N2N9 1353 aa14.06□□□□□ -0.16
SMAD3-211ENST00000559460 FSTL1Q12841 308 aa14.05□□□□□ -0.16
SMAD3-211ENST00000559460 ANKRD24Q8TF21 1146 aa14.05□□□□□ -0.16
SMAD3-211ENST00000559460 NMRK2Q9NPI5 230 aa14.04□□□□□ -0.16
SMAD3-211ENST00000559460 NFAT5O94916 1531 aa14.04□□□□□ -0.16
SMAD3-211ENST00000559460 LY75O60449 1722 aa14.02□□□□□ -0.16
SMAD3-211ENST00000559460 HSPA1AP0DMV8 641 aaKnown RBP14.02□□□□□ -0.17
SMAD3-211ENST00000559460 HSPA1BP0DMV9 641 aaKnown RBP14.02□□□□□ -0.17
SMAD3-211ENST00000559460 EVC2Q86UK5 1308 aa14.01□□□□□ -0.17
SMAD3-211ENST00000559460 AK7Q96M32 723 aa14.01□□□□□ -0.17
SMAD3-211ENST00000559460 DOT1LQ8TEK3 1739 aa14.01□□□□□ -0.17
SMAD3-211ENST00000559460 NSD3Q9BZ95 1437 aa14□□□□□ -0.17
SMAD3-211ENST00000559460 PCDH10Q9P2E7 1040 aa14□□□□□ -0.17
SMAD3-211ENST00000559460 CICQ96RK0 1608 aaPredicted RBP14□□□□□ -0.17
SMAD3-211ENST00000559460 KTN1Q86UP2 1357 aaKnown RBP13.99□□□□□ -0.17
SMAD3-211ENST00000559460 PLEKHG2Q9H7P9 1386 aa13.99□□□□□ -0.17
SMAD3-211ENST00000559460 KDM2BQ8NHM5 1336 aa13.99□□□□□ -0.17
SMAD3-211ENST00000559460 PHF14O94880 888 aa13.99□□□□□ -0.17
SMAD3-211ENST00000559460 ARHGAP27Q6ZUM4 889 aa13.99□□□□□ -0.17
SMAD3-211ENST00000559460 BCS1LQ9Y276 419 aa13.99□□□□□ -0.17
SMAD3-211ENST00000559460 NSD2O96028 1365 aa13.97□□□□□ -0.17
SMAD3-211ENST00000559460 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.97□□□□□ -0.174e-6■■□□□ 13.1
SMAD3-211ENST00000559460 SMC1BQ8NDV3 1235 aa13.97□□□□□ -0.17
SMAD3-211ENST00000559460 KIAA1210Q9ULL0 1709 aa13.97□□□□□ -0.17
SMAD3-211ENST00000559460 C5P01031 1676 aa13.97□□□□□ -0.17
SMAD3-211ENST00000559460 LTV1Q96GA3 475 aaPredicted RBP13.96□□□□□ -0.17
SMAD3-211ENST00000559460 ZCRB1Q8TBF4 217 aaKnown RBP13.95□□□□□ -0.18
SMAD3-211ENST00000559460 LTN1O94822 1766 aa13.94□□□□□ -0.18
SMAD3-211ENST00000559460 NBPF1Q3BBV0 1214 aa13.94□□□□□ -0.18
SMAD3-211ENST00000559460 PALLDQ8WX93 1383 aa13.94□□□□□ -0.18
SMAD3-211ENST00000559460 FCHSD2O94868 740 aa13.93□□□□□ -0.18
SMAD3-211ENST00000559460 TGFB2P61812 414 aa13.93□□□□□ -0.18
SMAD3-211ENST00000559460 C9orf131Q5VYM1 1079 aa13.93□□□□□ -0.18
SMAD3-211ENST00000559460 FAM208AQ9UK61 1670 aaKnown RBP13.93□□□□□ -0.18
SMAD3-211ENST00000559460 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.92□□□□□ -0.18
SMAD3-211ENST00000559460 USP31Q70CQ4 1352 aa13.92□□□□□ -0.18
SMAD3-211ENST00000559460 KCPQ6ZWJ8 1503 aa13.91□□□□□ -0.18
SMAD3-211ENST00000559460 SSFA2P28290 1259 aa13.91□□□□□ -0.18
SMAD3-211ENST00000559460 RRAGCQ9HB90 399 aa13.91□□□□□ -0.18
SMAD3-211ENST00000559460 PXDNLA1KZ92 1463 aa13.91□□□□□ -0.18
SMAD3-211ENST00000559460 USP54Q70EL1 1684 aa13.91□□□□□ -0.18
SMAD3-211ENST00000559460 C4BP0C0L5 1744 aa13.9□□□□□ -0.18
SMAD3-211ENST00000559460 SMARCC1Q92922 1105 aaPredicted RBP13.9□□□□□ -0.18
SMAD3-211ENST00000559460 RNF181Q9P0P0 153 aa13.9□□□□□ -0.18
SMAD3-211ENST00000559460 C10orf71Q711Q0 1435 aa13.9□□□□□ -0.19
SMAD3-211ENST00000559460 A0A0G2JLW4 131 aa13.89□□□□□ -0.19
SMAD3-211ENST00000559460 MMP10P09238 476 aa13.89□□□□□ -0.19
SMAD3-211ENST00000559460 NME9Q86XW9 330 aa13.89□□□□□ -0.19
SMAD3-211ENST00000559460 IP6K1Q92551 441 aa13.89□□□□□ -0.19
SMAD3-211ENST00000559460 RAB3GAP2Q9H2M9 1393 aa13.88□□□□□ -0.19
SMAD3-211ENST00000559460 MPRIPQ6WCQ1 1025 aa13.88□□□□□ -0.19
SMAD3-211ENST00000559460 CCDC87Q9NVE4 849 aa13.88□□□□□ -0.19
SMAD3-211ENST00000559460 TNRC6CQ9HCJ0 1690 aaKnown RBP13.88□□□□□ -0.19
SMAD3-211ENST00000559460 HDGFL2Q7Z4V5 671 aaPredicted RBP13.87□□□□□ -0.19
SMAD3-211ENST00000559460 RAPGEF4Q8WZA2 1011 aa13.87□□□□□ -0.19
SMAD3-211ENST00000559460 CGNL1Q0VF96 1302 aa13.87□□□□□ -0.19
SMAD3-211ENST00000559460 TAF1LQ8IZX4 1826 aa13.86□□□□□ -0.19
SMAD3-211ENST00000559460 GNPATO15228 680 aa13.86□□□□□ -0.19
SMAD3-211ENST00000559460 AMPHP49418 695 aa13.86□□□□□ -0.19
SMAD3-211ENST00000559460 FAM161AQ3B820 660 aa13.86□□□□□ -0.19
SMAD3-211ENST00000559460 MON2Q7Z3U7 1717 aa13.86□□□□□ -0.19
SMAD3-211ENST00000559460 PCDH11XQ9BZA7 1347 aa13.86□□□□□ -0.19
SMAD3-211ENST00000559460 PCDH11YQ9BZA8 1340 aa13.86□□□□□ -0.19
SMAD3-211ENST00000559460 MEGF6O75095 1541 aa13.85□□□□□ -0.19
SMAD3-211ENST00000559460 PKD1L3Q7Z443 1732 aa13.85□□□□□ -0.19
SMAD3-211ENST00000559460 SMIM5Q71RC9 77 aa13.85□□□□□ -0.19
SMAD3-211ENST00000559460 AIDAQ96BJ3 306 aa13.85□□□□□ -0.19
SMAD3-211ENST00000559460 N4BP2Q86UW6 1770 aaPredicted RBP13.84□□□□□ -0.19
SMAD3-211ENST00000559460 DPEP1P16444 411 aa13.84□□□□□ -0.19
SMAD3-211ENST00000559460 TATP17735 454 aaPredicted RBP13.84□□□□□ -0.19
SMAD3-211ENST00000559460 TMC1Q8TDI8 760 aa13.84□□□□□ -0.19
SMAD3-211ENST00000559460 AMIGO3Q86WK7 504 aa13.83□□□□□ -0.2
SMAD3-211ENST00000559460 NLGN1Q8N2Q7 840 aa13.83□□□□□ -0.2
SMAD3-211ENST00000559460 PIM2Q9P1W9 311 aa13.83□□□□□ -0.2
SMAD3-211ENST00000559460 PARP3Q9Y6F1 533 aa13.83□□□□□ -0.2
SMAD3-211ENST00000559460 UBR3Q6ZT12 1888 aa13.82□□□□□ -0.2
SMAD3-211ENST00000559460 SMG6Q86US8 1419 aaKnown RBP13.82□□□□□ -0.2
SMAD3-211ENST00000559460 TOGARAM1Q9Y4F4 1720 aa13.82□□□□□ -0.2
SMAD3-211ENST00000559460 VEGFAP15692 232 aaPredicted RBP13.82□□□□□ -0.2
SMAD3-211ENST00000559460 TMF1P82094 1093 aa13.82□□□□□ -0.2
SMAD3-211ENST00000559460 PRDM10Q9NQV6 1147 aa13.82□□□□□ -0.2
SMAD3-211ENST00000559460 EDC4Q6P2E9 1401 aaKnown RBP13.81□□□□□ -0.2
SMAD3-211ENST00000559460 KIF13BQ9NQT8 1826 aa13.81□□□□□ -0.2
SMAD3-211ENST00000559460 HOXC9P31274 260 aa13.81□□□□□ -0.2
SMAD3-211ENST00000559460 DALRD3Q5D0E6 543 aaKnown RBP13.81□□□□□ -0.2
SMAD3-211ENST00000559460 SBNO2Q9Y2G9 1366 aa13.81□□□□□ -0.2
SMAD3-211ENST00000559460 LOC102724428A0A0B4J2F2 783 aa13.8□□□□□ -0.2
SMAD3-211ENST00000559460 SIK1P57059 783 aa13.8□□□□□ -0.2
SMAD3-211ENST00000559460 TERF2IPQ9NYB0 399 aa13.8□□□□□ -0.2
SMAD3-211ENST00000559460 MKRN1Q9UHC7 482 aaKnown RBP13.8□□□□□ -0.2
SMAD3-211ENST00000559460 ZC3H4Q9UPT8 1303 aaKnown RBP13.8□□□□□ -0.2
SMAD3-211ENST00000559460 FOXN1O15353 648 aa13.79□□□□□ -0.2
SMAD3-211ENST00000559460 CTCFP49711 727 aaPredicted RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms