RNA–Protein interactions for RNA: ENST00000558739.1

SMAD3-206, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-206ENST00000558739 CICQ96RK0 1608 aaPredicted RBP17.38■□□□□ 0.37
SMAD3-206ENST00000558739 IGSF1Q8N6C5 1336 aa17.38■□□□□ 0.37
SMAD3-206ENST00000558739 TOGARAM1Q9Y4F4 1720 aa17.38■□□□□ 0.37
SMAD3-206ENST00000558739 USP54Q70EL1 1684 aa17.37■□□□□ 0.37
SMAD3-206ENST00000558739 TNS4Q8IZW8 715 aa17.37■□□□□ 0.37
SMAD3-206ENST00000558739 CCNL1Q9UK58 526 aaPredicted RBP17.37■□□□□ 0.37
SMAD3-206ENST00000558739 PRELPP51888 382 aa17.36■□□□□ 0.37
SMAD3-206ENST00000558739 ANKRD24Q8TF21 1146 aa17.36■□□□□ 0.37
SMAD3-206ENST00000558739 ANKRD36BQ8N2N9 1353 aa17.36■□□□□ 0.37
SMAD3-206ENST00000558739 RAB3GAP2Q9H2M9 1393 aa17.36■□□□□ 0.37
SMAD3-206ENST00000558739 AMIGO3Q86WK7 504 aa17.35■□□□□ 0.37
SMAD3-206ENST00000558739 MON2Q7Z3U7 1717 aa17.35■□□□□ 0.37
SMAD3-206ENST00000558739 TAF1LQ8IZX4 1826 aa17.34■□□□□ 0.37
SMAD3-206ENST00000558739 NMRK2Q9NPI5 230 aa17.34■□□□□ 0.37
SMAD3-206ENST00000558739 TOMM70O94826 608 aa17.33■□□□□ 0.36
SMAD3-206ENST00000558739 SMIM5Q71RC9 77 aa17.33■□□□□ 0.36
SMAD3-206ENST00000558739 KLRG1Q96E93 195 aa17.33■□□□□ 0.36
SMAD3-206ENST00000558739 STAC3Q96MF2 364 aa17.33■□□□□ 0.36
SMAD3-206ENST00000558739 TTC21AQ8NDW8 1320 aa17.32■□□□□ 0.36
SMAD3-206ENST00000558739 JMYQ8N9B5 988 aa17.32■□□□□ 0.36
SMAD3-206ENST00000558739 FAM208AQ9UK61 1670 aaKnown RBP17.32■□□□□ 0.36
SMAD3-206ENST00000558739 RGPD2P0DJD1 1756 aa17.31■□□□□ 0.36
SMAD3-206ENST00000558739 KIAA1551Q9HCM1 1747 aa17.31■□□□□ 0.36
SMAD3-206ENST00000558739 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.3■□□□□ 0.36
SMAD3-206ENST00000558739 KTN1Q86UP2 1357 aaKnown RBP17.29■□□□□ 0.36
SMAD3-206ENST00000558739 UBR3Q6ZT12 1888 aa17.29■□□□□ 0.36
SMAD3-206ENST00000558739 NME9Q86XW9 330 aa17.29■□□□□ 0.36
SMAD3-206ENST00000558739 MEGF6O75095 1541 aa17.29■□□□□ 0.36
SMAD3-206ENST00000558739 N4BP2Q86UW6 1770 aaPredicted RBP17.28■□□□□ 0.36
SMAD3-206ENST00000558739 C4BP0C0L5 1744 aa17.28■□□□□ 0.36
SMAD3-206ENST00000558739 USP47Q96K76 1375 aa17.27■□□□□ 0.35
SMAD3-206ENST00000558739 LTV1Q96GA3 475 aaPredicted RBP17.26■□□□□ 0.35
SMAD3-206ENST00000558739 USP31Q70CQ4 1352 aa17.26■□□□□ 0.35
SMAD3-206ENST00000558739 PXDNLA1KZ92 1463 aa17.25■□□□□ 0.35
SMAD3-206ENST00000558739 EVC2Q86UK5 1308 aa17.25■□□□□ 0.35
SMAD3-206ENST00000558739 ZNF692Q9BU19 519 aaPredicted RBP17.25■□□□□ 0.35
SMAD3-206ENST00000558739 CD163L1Q9NR16 1453 aa17.24■□□□□ 0.35
SMAD3-206ENST00000558739 PHF14O94880 888 aa17.24■□□□□ 0.35
SMAD3-206ENST00000558739 SLC34A2O95436 690 aa17.24■□□□□ 0.35
SMAD3-206ENST00000558739 SBNO2Q9Y2G9 1366 aa17.24■□□□□ 0.35
SMAD3-206ENST00000558739 KIF13BQ9NQT8 1826 aa17.23■□□□□ 0.35
SMAD3-206ENST00000558739 RBM46Q8TBY0 533 aaKnown RBP17.22■□□□□ 0.35
SMAD3-206ENST00000558739 PKD1L3Q7Z443 1732 aa17.21■□□□□ 0.35
SMAD3-206ENST00000558739 PALLDQ8WX93 1383 aa17.21■□□□□ 0.35
SMAD3-206ENST00000558739 KCPQ6ZWJ8 1503 aa17.21■□□□□ 0.34
SMAD3-206ENST00000558739 BRCA1P38398 1863 aaKnown RBP17.2■□□□□ 0.34
SMAD3-206ENST00000558739 ZCRB1Q8TBF4 217 aaKnown RBP17.19■□□□□ 0.34
SMAD3-206ENST00000558739 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.18■□□□□ 0.34
SMAD3-206ENST00000558739 HSPA1AP0DMV8 641 aaKnown RBP17.18■□□□□ 0.34
SMAD3-206ENST00000558739 HSPA1BP0DMV9 641 aaKnown RBP17.18■□□□□ 0.34
SMAD3-206ENST00000558739 BCS1LQ9Y276 419 aa17.18■□□□□ 0.34
SMAD3-206ENST00000558739 ITGB4P16144 1822 aa17.17■□□□□ 0.34
SMAD3-206ENST00000558739 FLAD1Q8NFF5 587 aa17.17■□□□□ 0.34
SMAD3-206ENST00000558739 IP6K1Q92551 441 aa17.17■□□□□ 0.34
SMAD3-206ENST00000558739 AK7Q96M32 723 aa17.17■□□□□ 0.34
SMAD3-206ENST00000558739 MAP2P11137 1827 aaKnown RBP17.17■□□□□ 0.34
SMAD3-206ENST00000558739 FBLN1P23142 703 aa17.16■□□□□ 0.34
SMAD3-206ENST00000558739 A0A0G2JLW4 131 aa17.15■□□□□ 0.34
SMAD3-206ENST00000558739 ARHGAP27Q6ZUM4 889 aa17.15■□□□□ 0.34
SMAD3-206ENST00000558739 C16orf71Q8IYS4 520 aaPredicted RBP17.15■□□□□ 0.34
SMAD3-206ENST00000558739 USHBP1Q8N6Y0 703 aa17.15■□□□□ 0.34
SMAD3-206ENST00000558739 FSTL1Q12841 308 aa17.14■□□□□ 0.33
SMAD3-206ENST00000558739 C9orf131Q5VYM1 1079 aa17.14■□□□□ 0.33
SMAD3-206ENST00000558739 TNRC6CQ9HCJ0 1690 aaKnown RBP17.13■□□□□ 0.33
SMAD3-206ENST00000558739 C10orf71Q711Q0 1435 aa17.13■□□□□ 0.33
SMAD3-206ENST00000558739 MMP10P09238 476 aa17.13■□□□□ 0.33
SMAD3-206ENST00000558739 MPRIPQ6WCQ1 1025 aa17.13■□□□□ 0.33
SMAD3-206ENST00000558739 LINC00116Q8NCU8 138 aa17.13■□□□□ 0.33
SMAD3-206ENST00000558739 ARFGEF1Q9Y6D6 1849 aa17.12■□□□□ 0.33
SMAD3-206ENST00000558739 MAP3K19Q56UN5 1328 aa17.12■□□□□ 0.33
SMAD3-206ENST00000558739 HOXC9P31274 260 aa17.11■□□□□ 0.33
SMAD3-206ENST00000558739 EDC4Q6P2E9 1401 aaKnown RBP17.11■□□□□ 0.33
SMAD3-206ENST00000558739 DPEP1P16444 411 aa17.1■□□□□ 0.33
SMAD3-206ENST00000558739 NBPF6Q5VWK0 638 aa17.1■□□□□ 0.33
SMAD3-206ENST00000558739 NBPF4Q96M43 638 aa17.1■□□□□ 0.33
SMAD3-206ENST00000558739 RRAGCQ9HB90 399 aa17.1■□□□□ 0.33
SMAD3-206ENST00000558739 A0A1W2PP64 1363 aa17.1■□□□□ 0.33
SMAD3-206ENST00000558739 PLEKHG2Q9H7P9 1386 aa17.1■□□□□ 0.33
SMAD3-206ENST00000558739 SSFA2P28290 1259 aa17.09■□□□□ 0.33
SMAD3-206ENST00000558739 SBF1O95248 1867 aa17.09■□□□□ 0.33
SMAD3-206ENST00000558739 NSD3Q9BZ95 1437 aa17.08■□□□□ 0.32
SMAD3-206ENST00000558739 GNPATO15228 680 aa17.08■□□□□ 0.32
SMAD3-206ENST00000558739 FCHSD2O94868 740 aa17.08■□□□□ 0.32
SMAD3-206ENST00000558739 C4AP0C0L4 1744 aa17.07■□□□□ 0.32
SMAD3-206ENST00000558739 TMC1Q8TDI8 760 aa17.07■□□□□ 0.32
SMAD3-206ENST00000558739 SLC12A5Q9H2X9 1139 aa17.07■□□□□ 0.32
SMAD3-206ENST00000558739 CYP27B1O15528 508 aa17.06■□□□□ 0.32
SMAD3-206ENST00000558739 ITPK1Q13572 414 aa17.06■□□□□ 0.32
SMAD3-206ENST00000558739 SMC1BQ8NDV3 1235 aa17.06■□□□□ 0.32
SMAD3-206ENST00000558739 RNF181Q9P0P0 153 aa17.06■□□□□ 0.32
SMAD3-206ENST00000558739 PIGBQ92521 554 aa17.05■□□□□ 0.32
SMAD3-206ENST00000558739 ROCK2O75116 1388 aaKnown RBP17.04■□□□□ 0.32
SMAD3-206ENST00000558739 KDM2BQ8NHM5 1336 aa17.04■□□□□ 0.32
SMAD3-206ENST00000558739 PCDH11XQ9BZA7 1347 aa17.04■□□□□ 0.32
SMAD3-206ENST00000558739 PCDH11YQ9BZA8 1340 aa17.04■□□□□ 0.32
SMAD3-206ENST00000558739 KCNA3P22001 575 aa17.04■□□□□ 0.32
SMAD3-206ENST00000558739 TGFB2P61812 414 aa17.04■□□□□ 0.32
SMAD3-206ENST00000558739 LOC102724428A0A0B4J2F2 783 aa17.03■□□□□ 0.32
SMAD3-206ENST00000558739 AMPHP49418 695 aa17.03■□□□□ 0.32
SMAD3-206ENST00000558739 SIK1P57059 783 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms