RNA–Protein interactions for RNA: ENST00000557477.1

PRPF39-212, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-212ENST00000557477 SLAIN2Q9P270 581 aa8.37□□□□□ -1.07
PRPF39-212ENST00000557477 PCDHGA11Q9Y5H2 935 aa8.37□□□□□ -1.07
PRPF39-212ENST00000557477 WNT7AO00755 349 aa8.36□□□□□ -1.07
PRPF39-212ENST00000557477 USP4Q13107 963 aa8.36□□□□□ -1.07
PRPF39-212ENST00000557477 LARGE2Q8N3Y3 721 aa8.36□□□□□ -1.07
PRPF39-212ENST00000557477 MRGPRX2Q96LB1 330 aa8.36□□□□□ -1.07
PRPF39-212ENST00000557477 V9GY48 417 aaPredicted RBP8.36□□□□□ -1.07
PRPF39-212ENST00000557477 RGS20O76081 388 aa8.35□□□□□ -1.07
PRPF39-212ENST00000557477 PSME1Q06323 249 aa8.35□□□□□ -1.07
PRPF39-212ENST00000557477 FOXC1Q12948 553 aa8.35□□□□□ -1.07
PRPF39-212ENST00000557477 ZNF598Q86UK7 904 aaKnown RBP8.35□□□□□ -1.07
PRPF39-212ENST00000557477 CCDC125Q86Z20 511 aa8.35□□□□□ -1.07
PRPF39-212ENST00000557477 SIX5Q8N196 739 aa8.35□□□□□ -1.07
PRPF39-212ENST00000557477 TPCN2Q8NHX9 752 aa8.35□□□□□ -1.07
PRPF39-212ENST00000557477 TMPRSS4Q9NRS4 437 aa8.35□□□□□ -1.07
PRPF39-212ENST00000557477 ADH1CP00326 375 aa8.34□□□□□ -1.07
PRPF39-212ENST00000557477 MPNDQ8N594 471 aa8.34□□□□□ -1.07
PRPF39-212ENST00000557477 SIRT1Q96EB6 747 aa8.34□□□□□ -1.07
PRPF39-212ENST00000557477 NR3C2P08235 984 aa8.33□□□□□ -1.08
PRPF39-212ENST00000557477 ERVK-9P63128 1117 aa8.33□□□□□ -1.08
PRPF39-212ENST00000557477 KCNA1Q09470 495 aa8.33□□□□□ -1.08
PRPF39-212ENST00000557477 CCDC102BQ68D86 513 aa8.33□□□□□ -1.08
PRPF39-212ENST00000557477 CYLDQ9NQC7 956 aa8.33□□□□□ -1.08
PRPF39-212ENST00000557477 SFI1A8K8P3 1242 aa8.32□□□□□ -1.08
PRPF39-212ENST00000557477 MYCP01106 439 aaPredicted RBP8.32□□□□□ -1.08
PRPF39-212ENST00000557477 PHLDB3Q6NSJ2 640 aa8.32□□□□□ -1.08
PRPF39-212ENST00000557477 ZNF784Q8NCA9 323 aaPredicted RBP8.32□□□□□ -1.08
PRPF39-212ENST00000557477 SEC13P55735 322 aa8.31□□□□□ -1.08
PRPF39-212ENST00000557477 PPP1R26Q5T8A7 1209 aaPredicted RBP8.31□□□□□ -1.08
PRPF39-212ENST00000557477 CC2D2BQ6DHV5 1058 aa8.31□□□□□ -1.08
PRPF39-212ENST00000557477 CCDC116Q8IYX3 515 aa8.31□□□□□ -1.08
PRPF39-212ENST00000557477 CLP1Q92989 425 aaKnown RBP8.31□□□□□ -1.08
PRPF39-212ENST00000557477 OSBPL3Q9H4L5 887 aa8.31□□□□□ -1.08
PRPF39-212ENST00000557477 LILRA1O75019 489 aa8.3□□□□□ -1.08
PRPF39-212ENST00000557477 LGR5O75473 907 aa8.3□□□□□ -1.08
PRPF39-212ENST00000557477 STAU1O95793 577 aaKnown RBP8.3□□□□□ -1.08
PRPF39-212ENST00000557477 DHX9Q08211 1270 aaKnown RBP8.3□□□□□ -1.08
PRPF39-212ENST00000557477 NR5A1Q13285 461 aa8.3□□□□□ -1.08
PRPF39-212ENST00000557477 SWI5Q1ZZU3 235 aa8.3□□□□□ -1.08
PRPF39-212ENST00000557477 GZF1Q9H116 711 aaPredicted RBP8.3□□□□□ -1.08
PRPF39-212ENST00000557477 PKD2L1Q9P0L9 805 aa8.3□□□□□ -1.08
PRPF39-212ENST00000557477 ALDH1A1P00352 501 aa8.29□□□□□ -1.08
PRPF39-212ENST00000557477 SSFA2P28290 1259 aa8.29□□□□□ -1.08
PRPF39-212ENST00000557477 RBM19Q9Y4C8 960 aaKnown RBP8.29□□□□□ -1.08
PRPF39-212ENST00000557477 IVNS1ABPQ9Y6Y0 642 aa8.29□□□□□ -1.08
PRPF39-212ENST00000557477 PATL2C9JE40 543 aaKnown RBP8.28□□□□□ -1.08
PRPF39-212ENST00000557477 TNFRSF10AO00220 468 aa8.28□□□□□ -1.08
PRPF39-212ENST00000557477 B4GALNT3Q6L9W6 998 aa8.28□□□□□ -1.08
PRPF39-212ENST00000557477 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.28□□□□□ -1.08
PRPF39-212ENST00000557477 TMEM229AB2RXF0 380 aa8.27□□□□□ -1.09
PRPF39-212ENST00000557477 PRMT3O60678 531 aa8.27□□□□□ -1.09
PRPF39-212ENST00000557477 ATP2B4P23634 1241 aa8.27□□□□□ -1.09
PRPF39-212ENST00000557477 SCNN1AP37088 669 aa8.27□□□□□ -1.09
PRPF39-212ENST00000557477 SCNN1DP51172 638 aa8.27□□□□□ -1.09
PRPF39-212ENST00000557477 NNTQ13423 1086 aa8.27□□□□□ -1.09
PRPF39-212ENST00000557477 TSEN2Q8NCE0 465 aaKnown RBP8.27□□□□□ -1.09
PRPF39-212ENST00000557477 IRX2Q9BZI1 471 aaPredicted RBP8.27□□□□□ -1.09
PRPF39-212ENST00000557477 ESF1Q9H501 851 aaKnown RBP8.27□□□□□ -1.09
PRPF39-212ENST00000557477 ZNF358Q9NW07 568 aa8.27□□□□□ -1.09
PRPF39-212ENST00000557477 TTC24A2A3L6 582 aaPredicted RBP8.26□□□□□ -1.09
PRPF39-212ENST00000557477 GDF9O60383 454 aa8.26□□□□□ -1.09
PRPF39-212ENST00000557477 ADD1P35611 737 aaKnown RBP8.26□□□□□ -1.09
PRPF39-212ENST00000557477 MYT1Q01538 1121 aa8.26□□□□□ -1.09
PRPF39-212ENST00000557477 OCLNQ16625 522 aa8.26□□□□□ -1.09
PRPF39-212ENST00000557477 CYP4X1Q8N118 509 aa8.26□□□□□ -1.09
PRPF39-212ENST00000557477 PRIMPOLQ96LW4 560 aa8.26□□□□□ -1.09
PRPF39-212ENST00000557477 GDF10P55107 478 aa8.25□□□□□ -1.09
PRPF39-212ENST00000557477 SNIP1Q8TAD8 396 aaKnown RBP8.25□□□□□ -1.09
PRPF39-212ENST00000557477 ETNK1Q9HBU6 452 aa8.25□□□□□ -1.09
PRPF39-212ENST00000557477 GNEQ9Y223 722 aaKnown RBP8.25□□□□□ -1.09
PRPF39-212ENST00000557477 EMILIN1Q9Y6C2 1016 aa8.25□□□□□ -1.09
PRPF39-212ENST00000557477 J3QL48 77 aa8.24□□□□□ -1.09
PRPF39-212ENST00000557477 TXNDC2Q86VQ3 553 aa8.24□□□□□ -1.09
PRPF39-212ENST00000557477 HINFPQ9BQA5 517 aa8.24□□□□□ -1.09
PRPF39-212ENST00000557477 PGPEP1Q9NXJ5 209 aa8.24□□□□□ -1.09
PRPF39-212ENST00000557477 WASF2Q9Y6W5 498 aa8.24□□□□□ -1.09
PRPF39-212ENST00000557477 M0R2N6 131 aa8.23□□□□□ -1.09
PRPF39-212ENST00000557477 TMCO4Q5TGY1 634 aa8.23□□□□□ -1.09
PRPF39-212ENST00000557477 TRIM67Q6ZTA4 783 aa8.23□□□□□ -1.09
PRPF39-212ENST00000557477 CYP2U1Q7Z449 544 aa8.23□□□□□ -1.09
PRPF39-212ENST00000557477 GAS2L2Q8NHY3 880 aa8.23□□□□□ -1.09
PRPF39-212ENST00000557477 RAB6BQ9NRW1 208 aa8.23□□□□□ -1.09
PRPF39-212ENST00000557477 CXXC1Q9P0U4 656 aaPredicted RBP8.23□□□□□ -1.09
PRPF39-212ENST00000557477 CCDC9Q9Y3X0 531 aaKnown RBP8.23□□□□□ -1.09
PRPF39-212ENST00000557477 WASLO00401 505 aaPredicted RBP8.22□□□□□ -1.09
PRPF39-212ENST00000557477 INHAP05111 366 aa8.22□□□□□ -1.09
PRPF39-212ENST00000557477 CBLBQ13191 982 aa8.22□□□□□ -1.09
PRPF39-212ENST00000557477 ITPKCQ96DU7 683 aa8.22□□□□□ -1.09
PRPF39-212ENST00000557477 ARHGEF10LQ9HCE6 1279 aa8.22□□□□□ -1.09
PRPF39-212ENST00000557477 SERTAD1Q9UHV2 236 aa8.22□□□□□ -1.09
PRPF39-212ENST00000557477 PDZRN3Q9UPQ7 1066 aa8.22□□□□□ -1.09
PRPF39-212ENST00000557477 GNRH1P01148 92 aa8.21□□□□□ -1.1
PRPF39-212ENST00000557477 WEE1P30291 646 aa8.21□□□□□ -1.1
PRPF39-212ENST00000557477 PRR20EP86478 221 aa8.21□□□□□ -1.1
PRPF39-212ENST00000557477 PRR20CP86479 221 aa8.21□□□□□ -1.1
PRPF39-212ENST00000557477 PRR20DP86480 221 aa8.21□□□□□ -1.1
PRPF39-212ENST00000557477 PRR20BP86481 221 aa8.21□□□□□ -1.1
PRPF39-212ENST00000557477 PRR20AP86496 221 aa8.21□□□□□ -1.1
PRPF39-212ENST00000557477 TNS4Q8IZW8 715 aa8.21□□□□□ -1.1
PRPF39-212ENST00000557477 KDF1Q8NAX2 398 aaPredicted RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms