RNA–Protein interactions for RNA: ENST00000557356.5

PSEN1-222, Transcript of presenilin 1, human

TSL 4

Gene PSEN1, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSEN1-222	ENST00000557356	PCDH11X	Q9BZA7	1347 aa		10.59	□□□□□ -0.71
PSEN1-222	ENST00000557356	PCDH11Y	Q9BZA8	1340 aa		10.59	□□□□□ -0.71
PSEN1-222	ENST00000557356	AMOT	Q4VCS5	1084 aa		10.59	□□□□□ -0.71
PSEN1-222	ENST00000557356	PLEKHO1	Q53GL0	409 aa	Predicted RBP	10.59	□□□□□ -0.71
PSEN1-222	ENST00000557356	USHBP1	Q8N6Y0	703 aa		10.59	□□□□□ -0.71
PSEN1-222	ENST00000557356	RGPD1	P0DJD0	1748 aa		10.58	□□□□□ -0.72
PSEN1-222	ENST00000557356	ANKRD26	Q9UPS8	1709 aa		10.58	□□□□□ -0.72
PSEN1-222	ENST00000557356	DIAPH1	O60610	1272 aa	Known RBP	10.58	□□□□□ -0.72
PSEN1-222	ENST00000557356	MAP2	P11137	1827 aa	Known RBP	10.58	□□□□□ -0.72
PSEN1-222	ENST00000557356	IGSF1	Q8N6C5	1336 aa		10.58	□□□□□ -0.72
PSEN1-222	ENST00000557356	HSP90AB1	P08238	724 aa	Known RBP	10.57	□□□□□ -0.72
PSEN1-222	ENST00000557356	EZH2	Q15910	746 aa	Known RBP	10.57	□□□□□ -0.72
PSEN1-222	ENST00000557356	IFNL2	Q8IZJ0	200 aa		10.57	□□□□□ -0.72
PSEN1-222	ENST00000557356	NUDC	Q9Y266	331 aa		10.57	□□□□□ -0.72
PSEN1-222	ENST00000557356	LRRC37A3	O60309	1634 aa		10.57	□□□□□ -0.72
PSEN1-222	ENST00000557356	IL13	P35225	146 aa		10.56	□□□□□ -0.72
PSEN1-222	ENST00000557356	NKX1-1	Q15270	411 aa	Predicted RBP	10.56	□□□□□ -0.72
PSEN1-222	ENST00000557356	SYTL4	Q96C24	671 aa	Predicted RBP	10.56	□□□□□ -0.72
PSEN1-222	ENST00000557356	ACSBG1	Q96GR2	724 aa		10.56	□□□□□ -0.72
PSEN1-222	ENST00000557356	NCAPD2	Q15021	1401 aa		10.56	□□□□□ -0.72
PSEN1-222	ENST00000557356	PRIM1	P49642	420 aa	Known RBP	10.55	□□□□□ -0.72
PSEN1-222	ENST00000557356	CNGB1	Q14028	1251 aa	Predicted RBP	10.55	□□□□□ -0.72
PSEN1-222	ENST00000557356	SULT6B1	Q6IMI4	303 aa		10.55	□□□□□ -0.72
PSEN1-222	ENST00000557356	PEAK1	Q9H792	1746 aa		10.55	□□□□□ -0.72
PSEN1-222	ENST00000557356	MEGF6	O75095	1541 aa		10.54	□□□□□ -0.72
PSEN1-222	ENST00000557356	WNK3	Q9BYP7	1800 aa		10.54	□□□□□ -0.72
PSEN1-222	ENST00000557356	KCNQ2	O43526	872 aa		10.54	□□□□□ -0.72
PSEN1-222	ENST00000557356	RALBP1	Q15311	655 aa		10.54	□□□□□ -0.72
PSEN1-222	ENST00000557356	C1orf141	Q5JVX7	400 aa		10.54	□□□□□ -0.72
PSEN1-222	ENST00000557356	SLC27A3	Q5K4L6	730 aa		10.54	□□□□□ -0.72
PSEN1-222	ENST00000557356	SMARCC1	Q92922	1105 aa	Predicted RBP	10.54	□□□□□ -0.72
PSEN1-222	ENST00000557356	CYP27B1	O15528	508 aa		10.53	□□□□□ -0.72
PSEN1-222	ENST00000557356	DDX10	Q13206	875 aa	Known RBP	10.53	□□□□□ -0.72
PSEN1-222	ENST00000557356	TXNRD1	Q16881	649 aa		10.53	□□□□□ -0.72
PSEN1-222	ENST00000557356	DCAF5	Q96JK2	942 aa		10.53	□□□□□ -0.72
PSEN1-222	ENST00000557356	U2SURP	O15042	1029 aa	Known RBP	10.52	□□□□□ -0.73
PSEN1-222	ENST00000557356	PHKG2	P15735	406 aa		10.52	□□□□□ -0.73
PSEN1-222	ENST00000557356	PPP2R1A	P30153	589 aa		10.52	□□□□□ -0.73
PSEN1-222	ENST00000557356	PNN	Q9H307	717 aa	Known RBP	10.52	□□□□□ -0.73
PSEN1-222	ENST00000557356	STK32B	Q9NY57	414 aa		10.52	□□□□□ -0.73
PSEN1-222	ENST00000557356	KDR	P35968	1356 aa		10.52	□□□□□ -0.73
PSEN1-222	ENST00000557356	ERVV-2	B6SEH9	535 aa		10.51	□□□□□ -0.73
PSEN1-222	ENST00000557356	NEFM	P07197	916 aa		10.51	□□□□□ -0.73
PSEN1-222	ENST00000557356	ZNF530	Q6P9A1	599 aa	Predicted RBP	10.51	□□□□□ -0.73
PSEN1-222	ENST00000557356	TMOD3	Q9NYL9	352 aa		10.51	□□□□□ -0.73
PSEN1-222	ENST00000557356	FCHSD2	O94868	740 aa		10.5	□□□□□ -0.73
PSEN1-222	ENST00000557356	R3HDM1	Q15032	1099 aa	Known RBP	10.5	□□□□□ -0.73
PSEN1-222	ENST00000557356	MPRIP	Q6WCQ1	1025 aa		10.5	□□□□□ -0.73
PSEN1-222	ENST00000557356	PTF1A	Q7RTS3	328 aa		10.5	□□□□□ -0.73
PSEN1-222	ENST00000557356	PROM2	Q8N271	834 aa		10.5	□□□□□ -0.73
PSEN1-222	ENST00000557356	TNS1	Q9HBL0	1735 aa	Known RBP	10.5	□□□□□ -0.73
PSEN1-222	ENST00000557356	AKAP4	Q5JQC9	854 aa		10.49	□□□□□ -0.73
PSEN1-222	ENST00000557356	GAS2L2	Q8NHY3	880 aa		10.49	□□□□□ -0.73
PSEN1-222	ENST00000557356	RGPD2	P0DJD1	1756 aa		10.49	□□□□□ -0.73
PSEN1-222	ENST00000557356	SBF2	Q86WG5	1849 aa		10.49	□□□□□ -0.73
PSEN1-222	ENST00000557356	ZNF316	A6NFI3	1004 aa	Predicted RBP	10.48	□□□□□ -0.73
PSEN1-222	ENST00000557356	HMOX1	P09601	288 aa		10.48	□□□□□ -0.73
PSEN1-222	ENST00000557356	U2AF1L5	P0DN76	240 aa	Predicted RBP	10.48	□□□□□ -0.73
PSEN1-222	ENST00000557356	CABP4	P57796	275 aa		10.48	□□□□□ -0.73
PSEN1-222	ENST00000557356	U2AF1	Q01081	240 aa	Known RBP eCLIP	10.48	□□□□□ -0.73
PSEN1-222	ENST00000557356	AEBP1	Q8IUX7	1158 aa		10.48	□□□□□ -0.73
PSEN1-222	ENST00000557356	NHS	Q6T4R5	1651 aa		10.47	□□□□□ -0.73
PSEN1-222	ENST00000557356	RGPD3	A6NKT7	1758 aa	Predicted RBP	10.47	□□□□□ -0.73
PSEN1-222	ENST00000557356	RGPD4	Q7Z3J3	1758 aa		10.47	□□□□□ -0.73
PSEN1-222	ENST00000557356	PSD	A5PKW4	1024 aa	Predicted RBP	10.47	□□□□□ -0.73
PSEN1-222	ENST00000557356	SLC15A2	Q16348	729 aa		10.47	□□□□□ -0.73
PSEN1-222	ENST00000557356	PIGB	Q92521	554 aa		10.47	□□□□□ -0.73
PSEN1-222	ENST00000557356	CCNL1	Q9UK58	526 aa	Predicted RBP	10.47	□□□□□ -0.73
PSEN1-222	ENST00000557356	FLAD1	Q8NFF5	587 aa		10.46	□□□□□ -0.73
PSEN1-222	ENST00000557356	SPON1	Q9HCB6	807 aa		10.46	□□□□□ -0.73
PSEN1-222	ENST00000557356	KAT6B	Q8WYB5	2073 aa		10.46	□□□□□ -0.74
PSEN1-222	ENST00000557356	PKD1L3	Q7Z443	1732 aa		10.45	□□□□□ -0.74
PSEN1-222	ENST00000557356	MYBBP1A	Q9BQG0	1328 aa	Known RBP	10.45	□□□□□ -0.74
PSEN1-222	ENST00000557356	SLC16A10	Q8TF71	515 aa		10.45	□□□□□ -0.74
PSEN1-222	ENST00000557356	PALLD	Q8WX93	1383 aa		10.44	□□□□□ -0.74
PSEN1-222	ENST00000557356	GNAT3	A8MTJ3	354 aa		10.44	□□□□□ -0.74
PSEN1-222	ENST00000557356	MTHFSD	Q2M296	383 aa	Known RBP	10.44	□□□□□ -0.74
PSEN1-222	ENST00000557356	RTF1	Q92541	710 aa	Known RBP	10.44	□□□□□ -0.74
PSEN1-222	ENST00000557356	LRRC4B	Q9NT99	713 aa		10.44	□□□□□ -0.74
PSEN1-222	ENST00000557356	TFCP2L1	Q9NZI6	479 aa		10.44	□□□□□ -0.74
PSEN1-222	ENST00000557356	LOC102724428	A0A0B4J2F2	783 aa		10.43	□□□□□ -0.74
PSEN1-222	ENST00000557356	HTATSF1	O43719	755 aa	Known RBP	10.43	□□□□□ -0.74
PSEN1-222	ENST00000557356	PRKAR2B	P31323	418 aa		10.43	□□□□□ -0.74
PSEN1-222	ENST00000557356	SIK1	P57059	783 aa		10.43	□□□□□ -0.74
PSEN1-222	ENST00000557356	TEF	Q10587	303 aa		10.43	□□□□□ -0.74
PSEN1-222	ENST00000557356	NFATC2IP	Q8NCF5	419 aa		10.43	□□□□□ -0.74
PSEN1-222	ENST00000557356	AKT1S1	Q96B36	256 aa		10.43	□□□□□ -0.74
PSEN1-222	ENST00000557356	BTAF1	O14981	1849 aa		10.42	□□□□□ -0.74
PSEN1-222	ENST00000557356	RREB1	Q92766	1687 aa		10.42	□□□□□ -0.74
PSEN1-222	ENST00000557356	RNMT	O43148	476 aa	Known RBP	10.42	□□□□□ -0.74
PSEN1-222	ENST00000557356	ATP6V1A	P38606	617 aa		10.42	□□□□□ -0.74
PSEN1-222	ENST00000557356	MAPK8IP2	Q13387	824 aa	Predicted RBP	10.42	□□□□□ -0.74
PSEN1-222	ENST00000557356	RSPH6A	Q9H0K4	717 aa		10.42	□□□□□ -0.74
PSEN1-222	ENST00000557356	SLC52A2	Q9HAB3	445 aa		10.42	□□□□□ -0.74
PSEN1-222	ENST00000557356	ATG3	Q9NT62	314 aa		10.42	□□□□□ -0.74
PSEN1-222	ENST00000557356	ASAP1	Q9ULH1	1129 aa		10.42	□□□□□ -0.74
PSEN1-222	ENST00000557356	COL3A1	P02461	1466 aa	Predicted RBP	10.42	□□□□□ -0.74
PSEN1-222	ENST00000557356	SHANK3	Q9BYB0	1731 aa		10.41	□□□□□ -0.74
PSEN1-222	ENST00000557356	AK7	Q96M32	723 aa		10.41	□□□□□ -0.74
PSEN1-222	ENST00000557356	RBM42	Q9BTD8	480 aa	Known RBP	10.41	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms