RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 RGPD4Q7Z3J3 1758 aa16.92■□□□□ 0.3
SLIRP-209ENST00000557342 APBA3O96018 575 aa16.91■□□□□ 0.3
SLIRP-209ENST00000557342 MTHFSP49914 203 aa16.91■□□□□ 0.3
SLIRP-209ENST00000557342 CNGB1Q14028 1251 aaPredicted RBP16.91■□□□□ 0.3
SLIRP-209ENST00000557342 DDX54Q8TDD1 881 aaKnown RBP16.91■□□□□ 0.3
SLIRP-209ENST00000557342 BCL11BQ9C0K0 894 aaPredicted RBP16.91■□□□□ 0.3
SLIRP-209ENST00000557342 PARD3Q8TEW0 1356 aa16.9■□□□□ 0.3
SLIRP-209ENST00000557342 EN1Q05925 392 aaPredicted RBP16.9■□□□□ 0.3
SLIRP-209ENST00000557342 PLEKHG2Q9H7P9 1386 aa16.89■□□□□ 0.3
SLIRP-209ENST00000557342 IGSF1Q8N6C5 1336 aa16.89■□□□□ 0.29
SLIRP-209ENST00000557342 RREB1Q92766 1687 aa16.88■□□□□ 0.29
SLIRP-209ENST00000557342 DOT1LQ8TEK3 1739 aa16.88■□□□□ 0.29
SLIRP-209ENST00000557342 PCDH11XQ9BZA7 1347 aa16.88■□□□□ 0.29
SLIRP-209ENST00000557342 PCDH11YQ9BZA8 1340 aa16.88■□□□□ 0.29
SLIRP-209ENST00000557342 BTAF1O14981 1849 aa16.87■□□□□ 0.29
SLIRP-209ENST00000557342 SPG7Q9UQ90 795 aa16.87■□□□□ 0.29
SLIRP-209ENST00000557342 PLSCR1O15162 318 aa16.86■□□□□ 0.29
SLIRP-209ENST00000557342 IL13P35225 146 aa16.86■□□□□ 0.29
SLIRP-209ENST00000557342 CAMKK2Q96RR4 588 aa16.86■□□□□ 0.29
SLIRP-209ENST00000557342 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.86■□□□□ 0.29
SLIRP-209ENST00000557342 DIAPH1O60610 1272 aaKnown RBP16.85■□□□□ 0.29
SLIRP-209ENST00000557342 EZH2Q15910 746 aaKnown RBP16.85■□□□□ 0.29
SLIRP-209ENST00000557342 ACSBG1Q96GR2 724 aa16.85■□□□□ 0.29
SLIRP-209ENST00000557342 NUP188Q5SRE5 1749 aa16.84■□□□□ 0.29
SLIRP-209ENST00000557342 DDX10Q13206 875 aaKnown RBP16.84■□□□□ 0.29
SLIRP-209ENST00000557342 KCNQ2O43526 872 aa16.83■□□□□ 0.28
SLIRP-209ENST00000557342 CFAP53Q96M91 514 aa16.83■□□□□ 0.28
SLIRP-209ENST00000557342 ITGB4P16144 1822 aa16.82■□□□□ 0.28
SLIRP-209ENST00000557342 KDRP35968 1356 aa16.82■□□□□ 0.28
SLIRP-209ENST00000557342 SULT6B1Q6IMI4 303 aa16.82■□□□□ 0.28
SLIRP-209ENST00000557342 PTF1AQ7RTS3 328 aa16.82■□□□□ 0.28
SLIRP-209ENST00000557342 COL3A1P02461 1466 aaPredicted RBP16.81■□□□□ 0.28
SLIRP-209ENST00000557342 CYP27B1O15528 508 aa16.81■□□□□ 0.28
SLIRP-209ENST00000557342 PPP2R1AP30153 589 aa16.81■□□□□ 0.28
SLIRP-209ENST00000557342 AMOTQ4VCS5 1084 aa16.81■□□□□ 0.28
SLIRP-209ENST00000557342 PLEKHO1Q53GL0 409 aaPredicted RBP16.81■□□□□ 0.28
SLIRP-209ENST00000557342 PRIM1P49642 420 aaKnown RBP16.8■□□□□ 0.28
SLIRP-209ENST00000557342 IFNL2Q8IZJ0 200 aa16.8■□□□□ 0.28
SLIRP-209ENST00000557342 SYTL4Q96C24 671 aaPredicted RBP16.8■□□□□ 0.28
SLIRP-209ENST00000557342 TOGARAM1Q9Y4F4 1720 aa16.79■□□□□ 0.28
SLIRP-209ENST00000557342 NKX1-1Q15270 411 aaPredicted RBP16.79■□□□□ 0.28
SLIRP-209ENST00000557342 AEBP1Q8IUX7 1158 aa16.79■□□□□ 0.28
SLIRP-209ENST00000557342 NBPF14Q5TI25 921 aa16.78■□□□□ 0.28
SLIRP-209ENST00000557342 LY75O60449 1722 aa16.78■□□□□ 0.28
SLIRP-209ENST00000557342 HSP90AB1P08238 724 aaKnown RBP16.77■□□□□ 0.28
SLIRP-209ENST00000557342 PHKG2P15735 406 aa16.77■□□□□ 0.28
SLIRP-209ENST00000557342 RALBP1Q15311 655 aa16.77■□□□□ 0.28
SLIRP-209ENST00000557342 NUDCQ9Y266 331 aa16.77■□□□□ 0.28
SLIRP-209ENST00000557342 VIRMAQ69YN4 1812 aaKnown RBP16.77■□□□□ 0.27
SLIRP-209ENST00000557342 U2SURPO15042 1029 aaKnown RBP16.76■□□□□ 0.27
SLIRP-209ENST00000557342 HMOX1P09601 288 aa16.76■□□□□ 0.27
SLIRP-209ENST00000557342 TXNRD1Q16881 649 aa16.76■□□□□ 0.27
SLIRP-209ENST00000557342 C1orf141Q5JVX7 400 aa16.75■□□□□ 0.27
SLIRP-209ENST00000557342 ZNF530Q6P9A1 599 aaPredicted RBP16.75■□□□□ 0.27
SLIRP-209ENST00000557342 ZNF316A6NFI3 1004 aaPredicted RBP16.74■□□□□ 0.27
SLIRP-209ENST00000557342 SCN11AQ9UI33 1791 aa16.74■□□□□ 0.27
SLIRP-209ENST00000557342 PROM2Q8N271 834 aa16.73■□□□□ 0.27
SLIRP-209ENST00000557342 SLC27A3Q5K4L6 730 aa16.72■□□□□ 0.27
SLIRP-209ENST00000557342 MPRIPQ6WCQ1 1025 aa16.72■□□□□ 0.27
SLIRP-209ENST00000557342 DCAF5Q96JK2 942 aa16.72■□□□□ 0.27
SLIRP-209ENST00000557342 HMGB2P26583 209 aaKnown RBP16.71■□□□□ 0.27
SLIRP-209ENST00000557342 R3HDM1Q15032 1099 aaKnown RBP16.71■□□□□ 0.27
SLIRP-209ENST00000557342 TMOD3Q9NYL9 352 aa16.71■□□□□ 0.27
SLIRP-209ENST00000557342 PSDA5PKW4 1024 aaPredicted RBP16.7■□□□□ 0.26
SLIRP-209ENST00000557342 ERVV-2B6SEH9 535 aa16.7■□□□□ 0.26
SLIRP-209ENST00000557342 AKAP4Q5JQC9 854 aa16.7■□□□□ 0.26
SLIRP-209ENST00000557342 SMARCC1Q92922 1105 aaPredicted RBP16.7■□□□□ 0.26
SLIRP-209ENST00000557342 MYBBP1AQ9BQG0 1328 aaKnown RBP16.7■□□□□ 0.26
SLIRP-209ENST00000557342 U2AF1L5P0DN76 240 aaPredicted RBP16.69■□□□□ 0.26
SLIRP-209ENST00000557342 U2AF1Q01081 240 aaKnown RBP eCLIP16.69■□□□□ 0.26
SLIRP-209ENST00000557342 PAPPAQ13219 1627 aa16.69■□□□□ 0.26
SLIRP-209ENST00000557342 TAF1LQ8IZX4 1826 aa16.68■□□□□ 0.26
SLIRP-209ENST00000557342 PIGBQ92521 554 aa16.68■□□□□ 0.26
SLIRP-209ENST00000557342 STK32BQ9NY57 414 aa16.68■□□□□ 0.26
SLIRP-209ENST00000557342 KDM6AO15550 1401 aaPredicted RBP16.68■□□□□ 0.26
SLIRP-209ENST00000557342 PALLDQ8WX93 1383 aa16.67■□□□□ 0.26
SLIRP-209ENST00000557342 C5P01031 1676 aa16.67■□□□□ 0.26
SLIRP-209ENST00000557342 FCHSD2O94868 740 aa16.67■□□□□ 0.26
SLIRP-209ENST00000557342 MTHFSDQ2M296 383 aaKnown RBP16.67■□□□□ 0.26
SLIRP-209ENST00000557342 GAS2L2Q8NHY3 880 aa16.67■□□□□ 0.26
SLIRP-209ENST00000557342 RSPH6AQ9H0K4 717 aa16.67■□□□□ 0.26
SLIRP-209ENST00000557342 QSER1Q2KHR3 1735 aa16.67■□□□□ 0.26
SLIRP-209ENST00000557342 ADAMTS7Q9UKP4 1686 aa16.66■□□□□ 0.26
SLIRP-209ENST00000557342 PRKAR2BP31323 418 aa16.66■□□□□ 0.26
SLIRP-209ENST00000557342 CABP4P57796 275 aa16.66■□□□□ 0.26
SLIRP-209ENST00000557342 ANO8Q9HCE9 1232 aaPredicted RBP16.66■□□□□ 0.26
SLIRP-209ENST00000557342 LRRC4BQ9NT99 713 aa16.66■□□□□ 0.26
SLIRP-209ENST00000557342 CCNL1Q9UK58 526 aaPredicted RBP16.66■□□□□ 0.26
SLIRP-209ENST00000557342 SLC15A2Q16348 729 aa16.65■□□□□ 0.26
SLIRP-209ENST00000557342 PRKRIP1Q9H875 184 aaPredicted RBP16.65■□□□□ 0.26
SLIRP-209ENST00000557342 LRP5O75197 1615 aa16.64■□□□□ 0.25
SLIRP-209ENST00000557342 NEFMP07197 916 aa16.64■□□□□ 0.25
SLIRP-209ENST00000557342 PNNQ9H307 717 aaKnown RBP16.64■□□□□ 0.25
SLIRP-209ENST00000557342 CASZ1Q86V15 1759 aa16.64■□□□□ 0.25
SLIRP-209ENST00000557342 ZNF831Q5JPB2 1677 aa16.63■□□□□ 0.25
SLIRP-209ENST00000557342 MAP3K5Q99683 1374 aa16.63■□□□□ 0.25
SLIRP-209ENST00000557342 TUBGCP6Q96RT7 1819 aa16.62■□□□□ 0.25
SLIRP-209ENST00000557342 GNAT3A8MTJ3 354 aa16.62■□□□□ 0.25
SLIRP-209ENST00000557342 RNMTO43148 476 aaKnown RBP16.62■□□□□ 0.25
SLIRP-209ENST00000557342 ASAP1Q9ULH1 1129 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms