RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, human

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLIRP-208	ENST00000556956	MAP2K3	P46734	347 aa		5.16	□□□□□ -1.58
SLIRP-208	ENST00000556956	LYSMD3	Q7Z3D4	306 aa		5.16	□□□□□ -1.58
SLIRP-208	ENST00000556956	PRR7	Q8TB68	274 aa		5.16	□□□□□ -1.58
SLIRP-208	ENST00000556956	NOP53	Q9NZM5	478 aa	Known RBP	5.16	□□□□□ -1.58
SLIRP-208	ENST00000556956	FDX1	P10109	184 aa		5.15	□□□□□ -1.59
SLIRP-208	ENST00000556956	DGKG	P49619	791 aa		5.15	□□□□□ -1.59
SLIRP-208	ENST00000556956	PRICKLE2	Q7Z3G6	844 aa		5.15	□□□□□ -1.59
SLIRP-208	ENST00000556956	PIK3R2	O00459	728 aa		5.14	□□□□□ -1.59
SLIRP-208	ENST00000556956	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	5.14	□□□□□ -1.59
SLIRP-208	ENST00000556956	JAG1	P78504	1218 aa		5.13	□□□□□ -1.59
SLIRP-208	ENST00000556956	GDF2	Q9UK05	429 aa	Predicted RBP	5.13	□□□□□ -1.59
SLIRP-208	ENST00000556956	MINK1	Q8N4C8	1332 aa	Predicted RBP	5.13	□□□□□ -1.59
SLIRP-208	ENST00000556956	F12	P00748	615 aa	Predicted RBP	5.12	□□□□□ -1.59
SLIRP-208	ENST00000556956	DESI1	Q6ICB0	168 aa		5.12	□□□□□ -1.59
SLIRP-208	ENST00000556956	TRMT44	Q8IYL2	757 aa	Known RBP	5.12	□□□□□ -1.59
SLIRP-208	ENST00000556956	BTBD6	Q96KE9	485 aa		5.12	□□□□□ -1.59
SLIRP-208	ENST00000556956	SLC24A1	O60721	1099 aa		5.11	□□□□□ -1.59
SLIRP-208	ENST00000556956	MAP2K5	Q13163	448 aa		5.11	□□□□□ -1.59
SLIRP-208	ENST00000556956	LYPD8	Q6UX82	237 aa		5.11	□□□□□ -1.59
SLIRP-208	ENST00000556956	KRI1	Q8N9T8	703 aa	Known RBP	5.11	□□□□□ -1.59
SLIRP-208	ENST00000556956		H7C1W4	665 aa		5.1	□□□□□ -1.59
SLIRP-208	ENST00000556956	IRF6	O14896	467 aa		5.1	□□□□□ -1.59
SLIRP-208	ENST00000556956	GOLGA6L1	Q8N7Z2	621 aa		5.1	□□□□□ -1.59
SLIRP-208	ENST00000556956	KDF1	Q8NAX2	398 aa	Predicted RBP	5.1	□□□□□ -1.59
SLIRP-208	ENST00000556956	GAS2L1	Q99501	681 aa	Predicted RBP	5.1	□□□□□ -1.59
SLIRP-208	ENST00000556956	CCER1	Q8TC90	406 aa	Predicted RBP	5.09	□□□□□ -1.59
SLIRP-208	ENST00000556956	TRIM11	Q96F44	468 aa		5.09	□□□□□ -1.59
SLIRP-208	ENST00000556956	RNF114	Q9Y508	228 aa		5.09	□□□□□ -1.59
SLIRP-208	ENST00000556956	MAGEB6P1	A0A0J9YX57	407 aa		5.08	□□□□□ -1.6
SLIRP-208	ENST00000556956	THBS1	P07996	1170 aa		5.08	□□□□□ -1.6
SLIRP-208	ENST00000556956	SPATA31C1	P0DKV0	1188 aa		5.08	□□□□□ -1.6
SLIRP-208	ENST00000556956	SLCO4C1	Q6ZQN7	724 aa		5.08	□□□□□ -1.6
SLIRP-208	ENST00000556956	GGA1	Q9UJY5	639 aa		5.08	□□□□□ -1.6
SLIRP-208	ENST00000556956	EPX	P11678	715 aa		5.07	□□□□□ -1.6
SLIRP-208	ENST00000556956	ELN	P15502	786 aa		5.07	□□□□□ -1.6
SLIRP-208	ENST00000556956	MDM2	Q00987	491 aa	Predicted RBP	5.07	□□□□□ -1.6
SLIRP-208	ENST00000556956	NUTM1	Q86Y26	1132 aa		5.07	□□□□□ -1.6
SLIRP-208	ENST00000556956	BCAN	Q96GW7	911 aa		5.07	□□□□□ -1.6
SLIRP-208	ENST00000556956	DYRK1B	Q9Y463	629 aa		5.07	□□□□□ -1.6
SLIRP-208	ENST00000556956	C2CD2L	O14523	706 aa		5.06	□□□□□ -1.6
SLIRP-208	ENST00000556956	NDUFV2	P19404	249 aa		5.06	□□□□□ -1.6
SLIRP-208	ENST00000556956	CLCN1	P35523	988 aa		5.06	□□□□□ -1.6
SLIRP-208	ENST00000556956	BARGIN	Q6ZT62	677 aa		5.06	□□□□□ -1.6
SLIRP-208	ENST00000556956	SH3BP5L	Q7L8J4	393 aa		5.06	□□□□□ -1.6
SLIRP-208	ENST00000556956	PLVAP	Q9BX97	442 aa		5.06	□□□□□ -1.6
SLIRP-208	ENST00000556956	NUCKS1	Q9H1E3	243 aa	Known RBP	5.06	□□□□□ -1.6
SLIRP-208	ENST00000556956	ZMYND10	O75800	440 aa		5.05	□□□□□ -1.6
SLIRP-208	ENST00000556956	ADH1A	P07327	375 aa		5.05	□□□□□ -1.6
SLIRP-208	ENST00000556956	TAL1	P17542	331 aa	Predicted RBP	5.05	□□□□□ -1.6
SLIRP-208	ENST00000556956	PTGIR	P43119	386 aa		5.05	□□□□□ -1.6
SLIRP-208	ENST00000556956	CARD14	Q9BXL6	1004 aa		5.05	□□□□□ -1.6
SLIRP-208	ENST00000556956	CFHR5	Q9BXR6	569 aa		5.05	□□□□□ -1.6
SLIRP-208	ENST00000556956	ADD1	P35611	737 aa	Known RBP	5.04	□□□□□ -1.6
SLIRP-208	ENST00000556956	RNF144A	P50876	292 aa	Predicted RBP	5.04	□□□□□ -1.6
SLIRP-208	ENST00000556956	MTMR2	Q13614	643 aa		5.04	□□□□□ -1.6
SLIRP-208	ENST00000556956	ERFE	Q4G0M1	354 aa		5.04	□□□□□ -1.6
SLIRP-208	ENST00000556956	LCE5A	Q5TCM9	118 aa		5.04	□□□□□ -1.6
SLIRP-208	ENST00000556956	ZC3H15	Q8WU90	426 aa	Known RBP	5.04	□□□□□ -1.6
SLIRP-208	ENST00000556956	H2AFB1	P0C5Y9	115 aa		5.03	□□□□□ -1.6
SLIRP-208	ENST00000556956	H2AFB2	P0C5Z0	115 aa		5.03	□□□□□ -1.6
SLIRP-208	ENST00000556956	IRAK1	P51617	712 aa		5.03	□□□□□ -1.6
SLIRP-208	ENST00000556956	CCDC102A	Q96A19	550 aa		5.03	□□□□□ -1.6
SLIRP-208	ENST00000556956	KCTD15	Q96SI1	283 aa	Predicted RBP	5.03	□□□□□ -1.6
SLIRP-208	ENST00000556956	GPCPD1	Q9NPB8	672 aa		5.03	□□□□□ -1.6
SLIRP-208	ENST00000556956	TMPRSS4	Q9NRS4	437 aa		5.03	□□□□□ -1.6
SLIRP-208	ENST00000556956	POU4F2	Q12837	409 aa		5.02	□□□□□ -1.61
SLIRP-208	ENST00000556956	INTS6L	Q5JSJ4	861 aa	Known RBP	5.02	□□□□□ -1.61
SLIRP-208	ENST00000556956	CHSY3	Q70JA7	882 aa		5.02	□□□□□ -1.61
SLIRP-208	ENST00000556956	RNF135	Q8IUD6	432 aa		5.02	□□□□□ -1.61
SLIRP-208	ENST00000556956	TRIM52	Q96A61	297 aa		5.02	□□□□□ -1.61
SLIRP-208	ENST00000556956	MOXD2P	A6NHM9	499 aa		5.01	□□□□□ -1.61
SLIRP-208	ENST00000556956	CFAP99	D6REC4	459 aa		5.01	□□□□□ -1.61
SLIRP-208	ENST00000556956	DHX9	Q08211	1270 aa	Known RBP	5.01	□□□□□ -1.61
SLIRP-208	ENST00000556956	ZNF784	Q8NCA9	323 aa	Predicted RBP	5.01	□□□□□ -1.61
SLIRP-208	ENST00000556956	AK7	Q96M32	723 aa		5.01	□□□□□ -1.61
SLIRP-208	ENST00000556956	SPDYE5	A6NIY4	337 aa		5	□□□□□ -1.61
SLIRP-208	ENST00000556956	PER1	O15534	1290 aa	Predicted RBP	5	□□□□□ -1.61
SLIRP-208	ENST00000556956	LILRA1	O75019	489 aa		5	□□□□□ -1.61
SLIRP-208	ENST00000556956	BMP4	P12644	408 aa		5	□□□□□ -1.61
SLIRP-208	ENST00000556956	FAM217B	Q9NTX9	383 aa	Predicted RBP	5	□□□□□ -1.61
SLIRP-208	ENST00000556956	NEURL1B	A8MQ27	555 aa		4.99	□□□□□ -1.61
SLIRP-208	ENST00000556956	KRTAP9-7	A8MTY7	169 aa		4.99	□□□□□ -1.61
SLIRP-208	ENST00000556956	UBAP2L	Q14157	1087 aa	Known RBP	4.99	□□□□□ -1.61
SLIRP-208	ENST00000556956	TTLL12	Q14166	644 aa	Predicted RBP	4.99	□□□□□ -1.61
SLIRP-208	ENST00000556956	DIXDC1	Q155Q3	683 aa		4.99	□□□□□ -1.61
SLIRP-208	ENST00000556956	AMHR2	Q16671	573 aa		4.99	□□□□□ -1.61
SLIRP-208	ENST00000556956	FAM229A	H3BQW9	127 aa		4.98	□□□□□ -1.61
SLIRP-208	ENST00000556956	APBA3	O96018	575 aa		4.98	□□□□□ -1.61
SLIRP-208	ENST00000556956	SSTR3	P32745	418 aa	Predicted RBP	4.98	□□□□□ -1.61
SLIRP-208	ENST00000556956	CTBS	Q01459	385 aa		4.98	□□□□□ -1.61
SLIRP-208	ENST00000556956	SPIRE2	Q8WWL2	714 aa		4.98	□□□□□ -1.61
SLIRP-208	ENST00000556956	RNF112	Q9ULX5	631 aa		4.98	□□□□□ -1.61
SLIRP-208	ENST00000556956	PCMTD2	Q9NV79	361 aa		4.97	□□□□□ -1.61
SLIRP-208	ENST00000556956	PHF24	Q9UPV7	400 aa		4.97	□□□□□ -1.61
SLIRP-208	ENST00000556956	F11	P03951	625 aa		4.96	□□□□□ -1.62
SLIRP-208	ENST00000556956	NBPF14	Q5TI25	921 aa		4.96	□□□□□ -1.62
SLIRP-208	ENST00000556956	NBPF10	Q6P3W6	841 aa	Known RBP	4.96	□□□□□ -1.62
SLIRP-208	ENST00000556956	NBPF15	Q8N660	670 aa		4.96	□□□□□ -1.62
SLIRP-208	ENST00000556956	OAS3	Q9Y6K5	1087 aa	Known RBP	4.96	□□□□□ -1.62
SLIRP-208	ENST00000556956	TRIM66	O15016	1216 aa		4.95	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms