RNA–Protein interactions for RNA: ENST00000556867.1

TDP1-216, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 748 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-216ENST00000556867 PKD1L3Q7Z443 1732 aa31.05■■■□□ 2.56
TDP1-216ENST00000556867 RGPD3A6NKT7 1758 aaPredicted RBP31.05■■■□□ 2.56
TDP1-216ENST00000556867 RGPD4Q7Z3J3 1758 aa31.05■■■□□ 2.56
TDP1-216ENST00000556867 PARD3Q8TEW0 1356 aa31.05■■■□□ 2.56
TDP1-216ENST00000556867 IGSF1Q8N6C5 1336 aa31.04■■■□□ 2.56
TDP1-216ENST00000556867 DDX54Q8TDD1 881 aaKnown RBP31.03■■■□□ 2.56
TDP1-216ENST00000556867 MTHFSP49914 203 aa31.02■■■□□ 2.56
TDP1-216ENST00000556867 CAMKK2Q96RR4 588 aa31.02■■■□□ 2.56
TDP1-216ENST00000556867 RREB1Q92766 1687 aa31.01■■■□□ 2.55
TDP1-216ENST00000556867 PTF1AQ7RTS3 328 aa31.01■■■□□ 2.55
TDP1-216ENST00000556867 PLEKHG2Q9H7P9 1386 aa31■■■□□ 2.55
TDP1-216ENST00000556867 KAT6BQ8WYB5 2073 aa30.99■■■□□ 2.55
TDP1-216ENST00000556867 CNGB1Q14028 1251 aaPredicted RBP30.99■■■□□ 2.55
TDP1-216ENST00000556867 EZH2Q15910 746 aaKnown RBP30.99■■■□□ 2.55
TDP1-216ENST00000556867 PCDH11XQ9BZA7 1347 aa30.98■■■□□ 2.55
TDP1-216ENST00000556867 PCDH11YQ9BZA8 1340 aa30.98■■■□□ 2.55
TDP1-216ENST00000556867 DOT1LQ8TEK3 1739 aa30.97■■■□□ 2.55
TDP1-216ENST00000556867 KCNQ2O43526 872 aa30.96■■■□□ 2.55
TDP1-216ENST00000556867 IL13P35225 146 aa30.96■■■□□ 2.55
TDP1-216ENST00000556867 ACSBG1Q96GR2 724 aa30.96■■■□□ 2.55
TDP1-216ENST00000556867 PLSCR1O15162 318 aa30.95■■■□□ 2.55
TDP1-216ENST00000556867 BTAF1O14981 1849 aa30.95■■■□□ 2.55
TDP1-216ENST00000556867 NUP188Q5SRE5 1749 aa30.94■■■□□ 2.54
TDP1-216ENST00000556867 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.94■■■□□ 2.547e-6■■□□□ 12.8
TDP1-216ENST00000556867 COL3A1P02461 1466 aaPredicted RBP30.93■■■□□ 2.54
TDP1-216ENST00000556867 SPG7Q9UQ90 795 aa30.92■■■□□ 2.54
TDP1-216ENST00000556867 CYP27B1O15528 508 aa30.91■■■□□ 2.54
TDP1-216ENST00000556867 KDRP35968 1356 aa30.91■■■□□ 2.54
TDP1-216ENST00000556867 DIAPH1O60610 1272 aaKnown RBP30.87■■■□□ 2.53
TDP1-216ENST00000556867 AEBP1Q8IUX7 1158 aa30.87■■■□□ 2.53
TDP1-216ENST00000556867 SULT6B1Q6IMI4 303 aa30.86■■■□□ 2.53
TDP1-216ENST00000556867 TOGARAM1Q9Y4F4 1720 aa30.85■■■□□ 2.53
TDP1-216ENST00000556867 PPP2R1AP30153 589 aa30.85■■■□□ 2.53
TDP1-216ENST00000556867 PRIM1P49642 420 aaKnown RBP30.85■■■□□ 2.53
TDP1-216ENST00000556867 DDX10Q13206 875 aaKnown RBP30.84■■■□□ 2.53
TDP1-216ENST00000556867 NKX1-1Q15270 411 aaPredicted RBP30.83■■■□□ 2.53
TDP1-216ENST00000556867 SYTL4Q96C24 671 aaPredicted RBP30.82■■■□□ 2.52
TDP1-216ENST00000556867 PROM2Q8N271 834 aa30.81■■■□□ 2.52
TDP1-216ENST00000556867 ITGB4P16144 1822 aa30.8■■■□□ 2.52
TDP1-216ENST00000556867 PHKG2P15735 406 aa30.8■■■□□ 2.52
TDP1-216ENST00000556867 AMOTQ4VCS5 1084 aa30.8■■■□□ 2.52
TDP1-216ENST00000556867 PLEKHO1Q53GL0 409 aaPredicted RBP30.8■■■□□ 2.52
TDP1-216ENST00000556867 IFNL2Q8IZJ0 200 aa30.8■■■□□ 2.52
TDP1-216ENST00000556867 CFAP53Q96M91 514 aa30.8■■■□□ 2.52
TDP1-216ENST00000556867 TXNRD1Q16881 649 aa30.79■■■□□ 2.52
TDP1-216ENST00000556867 NBPF14Q5TI25 921 aa30.76■■■□□ 2.51
TDP1-216ENST00000556867 LY75O60449 1722 aa30.76■■■□□ 2.51
TDP1-216ENST00000556867 HMOX1P09601 288 aa30.75■■■□□ 2.51
TDP1-216ENST00000556867 PSDA5PKW4 1024 aaPredicted RBP30.74■■■□□ 2.51
TDP1-216ENST00000556867 R3HDM1Q15032 1099 aaKnown RBP30.74■■■□□ 2.51
TDP1-216ENST00000556867 ZNF530Q6P9A1 599 aaPredicted RBP30.74■■■□□ 2.51
TDP1-216ENST00000556867 U2SURPO15042 1029 aaKnown RBP30.72■■■□□ 2.51
TDP1-216ENST00000556867 PAPPAQ13219 1627 aa30.72■■■□□ 2.51
TDP1-216ENST00000556867 HSP90AB1P08238 724 aaKnown RBP30.71■■■□□ 2.51
TDP1-216ENST00000556867 RALBP1Q15311 655 aa30.7■■■□□ 2.51
TDP1-216ENST00000556867 ANO8Q9HCE9 1232 aaPredicted RBP30.7■■■□□ 2.51
TDP1-216ENST00000556867 SLC27A3Q5K4L6 730 aa30.69■■■□□ 2.5
TDP1-216ENST00000556867 MPRIPQ6WCQ1 1025 aa30.69■■■□□ 2.5
TDP1-216ENST00000556867 KDM6AO15550 1401 aaPredicted RBP30.68■■■□□ 2.5
TDP1-216ENST00000556867 C1orf141Q5JVX7 400 aa30.68■■■□□ 2.5
TDP1-216ENST00000556867 DCAF5Q96JK2 942 aa30.68■■■□□ 2.5
TDP1-216ENST00000556867 NUDCQ9Y266 331 aa30.68■■■□□ 2.5
TDP1-216ENST00000556867 PIGBQ92521 554 aa30.66■■■□□ 2.5
TDP1-216ENST00000556867 LRRC4BQ9NT99 713 aa30.66■■■□□ 2.5
TDP1-216ENST00000556867 ERVV-2B6SEH9 535 aa30.64■■■□□ 2.5
TDP1-216ENST00000556867 TMOD3Q9NYL9 352 aa30.64■■■□□ 2.5
TDP1-216ENST00000556867 PALLDQ8WX93 1383 aa30.64■■■□□ 2.5
TDP1-216ENST00000556867 SCN11AQ9UI33 1791 aa30.64■■■□□ 2.49
TDP1-216ENST00000556867 ZNF316A6NFI3 1004 aaPredicted RBP30.62■■■□□ 2.49
TDP1-216ENST00000556867 AKAP4Q5JQC9 854 aa30.62■■■□□ 2.49
TDP1-216ENST00000556867 SMARCC1Q92922 1105 aaPredicted RBP30.62■■■□□ 2.49
TDP1-216ENST00000556867 STK32BQ9NY57 414 aa30.62■■■□□ 2.49
TDP1-216ENST00000556867 RSPH6AQ9H0K4 717 aa30.61■■■□□ 2.49
TDP1-216ENST00000556867 LRP5O75197 1615 aa30.6■■■□□ 2.49
TDP1-216ENST00000556867 MTHFSDQ2M296 383 aaKnown RBP30.6■■■□□ 2.49
TDP1-216ENST00000556867 SRCAPQ6ZRS2 3230 aa30.6■■■□□ 2.49
TDP1-216ENST00000556867 VIRMAQ69YN4 1812 aaKnown RBP30.59■■■□□ 2.49
TDP1-216ENST00000556867 U2AF1L5P0DN76 240 aaPredicted RBP30.59■■■□□ 2.49
TDP1-216ENST00000556867 U2AF1Q01081 240 aaKnown RBP eCLIP30.59■■■□□ 2.49
TDP1-216ENST00000556867 SLC15A2Q16348 729 aa30.59■■■□□ 2.49
TDP1-216ENST00000556867 CCNL1Q9UK58 526 aaPredicted RBP30.59■■■□□ 2.49
TDP1-216ENST00000556867 CASZ1Q86V15 1759 aa30.59■■■□□ 2.49
TDP1-216ENST00000556867 ADAMTS7Q9UKP4 1686 aa30.58■■■□□ 2.49
TDP1-216ENST00000556867 MYBBP1AQ9BQG0 1328 aaKnown RBP30.58■■■□□ 2.49
TDP1-216ENST00000556867 PRKAR2BP31323 418 aa30.57■■■□□ 2.48
TDP1-216ENST00000556867 KCNQ4P56696 695 aa30.56■■■□□ 2.48
TDP1-216ENST00000556867 TAF1LQ8IZX4 1826 aa30.56■■■□□ 2.48
TDP1-216ENST00000556867 C5P01031 1676 aa30.55■■■□□ 2.48
TDP1-216ENST00000556867 FCHSD2O94868 740 aa30.55■■■□□ 2.48
TDP1-216ENST00000556867 CABP4P57796 275 aa30.55■■■□□ 2.48
TDP1-216ENST00000556867 GAS2L2Q8NHY3 880 aa30.55■■■□□ 2.48
TDP1-216ENST00000556867 MRC1P22897 1456 aa30.55■■■□□ 2.48
TDP1-216ENST00000556867 QSER1Q2KHR3 1735 aa30.54■■■□□ 2.48
TDP1-216ENST00000556867 ZNF827Q17R98 1081 aa30.54■■■□□ 2.48
TDP1-216ENST00000556867 AKT1S1Q96B36 256 aa30.54■■■□□ 2.48
TDP1-216ENST00000556867 ASAP1Q9ULH1 1129 aa30.54■■■□□ 2.48
TDP1-216ENST00000556867 ATG3Q9NT62 314 aa30.53■■■□□ 2.48
TDP1-216ENST00000556867 PRKRIP1Q9H875 184 aaPredicted RBP30.52■■■□□ 2.48
TDP1-216ENST00000556867 RNMTO43148 476 aaKnown RBP30.51■■■□□ 2.47
TDP1-216ENST00000556867 PHACTR3Q96KR7 559 aa30.51■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms