RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	ZNF827	Q17R98	1081 aa		12.51	□□□□□ -0.41
SYNE2-222	ENST00000556725	KCNH5	Q8NCM2	988 aa		12.51	□□□□□ -0.41
SYNE2-222	ENST00000556725	LRRC4B	Q9NT99	713 aa		12.51	□□□□□ -0.41
SYNE2-222	ENST00000556725	GOLGB1	Q14789	3259 aa	Known RBP	12.5	□□□□□ -0.41
SYNE2-222	ENST00000556725	CEP350	Q5VT06	3117 aa		12.49	□□□□□ -0.41
SYNE2-222	ENST00000556725	KAT6B	Q8WYB5	2073 aa		12.49	□□□□□ -0.41
SYNE2-222	ENST00000556725	NHS	Q6T4R5	1651 aa		12.49	□□□□□ -0.41
SYNE2-222	ENST00000556725	GPR162	Q16538	588 aa		12.49	□□□□□ -0.41
SYNE2-222	ENST00000556725	PAPPA	Q13219	1627 aa		12.48	□□□□□ -0.41
SYNE2-222	ENST00000556725	NFAT5	O94916	1531 aa		12.48	□□□□□ -0.41
SYNE2-222	ENST00000556725	TNS2	Q63HR2	1409 aa		12.48	□□□□□ -0.41
SYNE2-222	ENST00000556725	CCDC7	Q96M83	1385 aa		12.48	□□□□□ -0.41
SYNE2-222	ENST00000556725	EVC2	Q86UK5	1308 aa		12.48	□□□□□ -0.41
SYNE2-222	ENST00000556725	TRPM1	Q7Z4N2	1603 aa		12.48	□□□□□ -0.41
SYNE2-222	ENST00000556725	MAP3K5	Q99683	1374 aa		12.47	□□□□□ -0.41
SYNE2-222	ENST00000556725	BTAF1	O14981	1849 aa		12.47	□□□□□ -0.41
SYNE2-222	ENST00000556725	KLHL34	Q8N239	644 aa		12.47	□□□□□ -0.41
SYNE2-222	ENST00000556725	OTUD5	Q96G74	571 aa		12.47	□□□□□ -0.41
SYNE2-222	ENST00000556725	NLRP2	Q9NX02	1062 aa		12.47	□□□□□ -0.41
SYNE2-222	ENST00000556725	TTC21A	Q8NDW8	1320 aa		12.46	□□□□□ -0.41
SYNE2-222	ENST00000556725	KCNQ4	P56696	695 aa		12.46	□□□□□ -0.41
SYNE2-222	ENST00000556725	IFFO2	Q5TF58	517 aa		12.46	□□□□□ -0.41
SYNE2-222	ENST00000556725	PELP1	Q8IZL8	1130 aa	Known RBP	12.46	□□□□□ -0.41
SYNE2-222	ENST00000556725	IL2RB	P14784	551 aa		12.45	□□□□□ -0.42
SYNE2-222	ENST00000556725	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	12.45	□□□□□ -0.42
SYNE2-222	ENST00000556725	NLGN2	Q8NFZ4	835 aa		12.45	□□□□□ -0.42
SYNE2-222	ENST00000556725	KTN1	Q86UP2	1357 aa	Known RBP	12.44	□□□□□ -0.42
SYNE2-222	ENST00000556725	ERBB3	P21860	1342 aa		12.44	□□□□□ -0.42
SYNE2-222	ENST00000556725	ABCC6	O95255	1503 aa		12.44	□□□□□ -0.42
SYNE2-222	ENST00000556725	GIGYF1	O75420	1035 aa	Predicted RBP	12.44	□□□□□ -0.42
SYNE2-222	ENST00000556725	L3MBTL2	Q969R5	705 aa		12.44	□□□□□ -0.42
SYNE2-222	ENST00000556725	PNPLA7	Q6ZV29	1317 aa		12.43	□□□□□ -0.42
SYNE2-222	ENST00000556725	NME9	Q86XW9	330 aa		12.43	□□□□□ -0.42
SYNE2-222	ENST00000556725	ANKRD24	Q8TF21	1146 aa		12.43	□□□□□ -0.42
SYNE2-222	ENST00000556725	DDX54	Q8TDD1	881 aa	Known RBP	12.42	□□□□□ -0.42
SYNE2-222	ENST00000556725	SLC16A10	Q8TF71	515 aa		12.42	□□□□□ -0.42
SYNE2-222	ENST00000556725	GALR2	O43603	387 aa	Predicted RBP	12.41	□□□□□ -0.42
SYNE2-222	ENST00000556725	YBX3	P16989	372 aa	Known RBP eCLIP	12.41	□□□□□ -0.42
SYNE2-222	ENST00000556725	POLD1	P28340	1107 aa		12.41	□□□□□ -0.42
SYNE2-222	ENST00000556725	COL24A1	Q17RW2	1714 aa		12.41	□□□□□ -0.42
SYNE2-222	ENST00000556725	SHANK3	Q9BYB0	1731 aa		12.41	□□□□□ -0.42
SYNE2-222	ENST00000556725	TUBGCP6	Q96RT7	1819 aa		12.41	□□□□□ -0.42
SYNE2-222	ENST00000556725	USP31	Q70CQ4	1352 aa		12.41	□□□□□ -0.42
SYNE2-222	ENST00000556725	LTN1	O94822	1766 aa		12.41	□□□□□ -0.42
SYNE2-222	ENST00000556725	POTEB2	H3BUK9	544 aa		12.4	□□□□□ -0.42
SYNE2-222	ENST00000556725	SLC27A3	Q5K4L6	730 aa		12.4	□□□□□ -0.42
SYNE2-222	ENST00000556725	TFCP2L1	Q9NZI6	479 aa		12.4	□□□□□ -0.42
SYNE2-222	ENST00000556725	QSER1	Q2KHR3	1735 aa		12.4	□□□□□ -0.43
SYNE2-222	ENST00000556725	MON2	Q7Z3U7	1717 aa		12.4	□□□□□ -0.43
SYNE2-222	ENST00000556725	PRIM1	P49642	420 aa	Known RBP	12.39	□□□□□ -0.43
SYNE2-222	ENST00000556725	SYTL4	Q96C24	671 aa	Predicted RBP	12.39	□□□□□ -0.43
SYNE2-222	ENST00000556725	SIN3A	Q96ST3	1273 aa		12.39	□□□□□ -0.43
SYNE2-222	ENST00000556725	LTV1	Q96GA3	475 aa	Predicted RBP	12.38	□□□□□ -0.43
SYNE2-222	ENST00000556725	SLC12A5	Q9H2X9	1139 aa		12.38	□□□□□ -0.43
SYNE2-222	ENST00000556725	CREBZF	Q9NS37	354 aa		12.38	□□□□□ -0.43
SYNE2-222	ENST00000556725	SBNO2	Q9Y2G9	1366 aa		12.38	□□□□□ -0.43
SYNE2-222	ENST00000556725	CD163L1	Q9NR16	1453 aa		12.38	□□□□□ -0.43
SYNE2-222	ENST00000556725	POTEM	A6NI47	508 aa		12.37	□□□□□ -0.43
SYNE2-222	ENST00000556725	ROCK2	O75116	1388 aa	Known RBP	12.37	□□□□□ -0.43
SYNE2-222	ENST00000556725	USP54	Q70EL1	1684 aa		12.36	□□□□□ -0.43
SYNE2-222	ENST00000556725	COL23A1	Q86Y22	540 aa	Predicted RBP	12.36	□□□□□ -0.43
SYNE2-222	ENST00000556725	TMC1	Q8TDI8	760 aa		12.36	□□□□□ -0.43
SYNE2-222	ENST00000556725	IP6K1	Q92551	441 aa		12.36	□□□□□ -0.43
SYNE2-222	ENST00000556725	NSD2	O96028	1365 aa		12.35	□□□□□ -0.43
SYNE2-222	ENST00000556725	FBLN1	P23142	703 aa		12.35	□□□□□ -0.43
SYNE2-222	ENST00000556725	MSL1	Q68DK7	614 aa		12.35	□□□□□ -0.43
SYNE2-222	ENST00000556725	LY75	O60449	1722 aa		12.34	□□□□□ -0.43
SYNE2-222	ENST00000556725	ANKRD36B	Q8N2N9	1353 aa		12.34	□□□□□ -0.43
SYNE2-222	ENST00000556725	GRIN3B	O60391	1043 aa		12.34	□□□□□ -0.43
SYNE2-222	ENST00000556725	NEUROD1	Q13562	356 aa		12.34	□□□□□ -0.43
SYNE2-222	ENST00000556725	CCNL1	Q9UK58	526 aa	Predicted RBP	12.34	□□□□□ -0.43
SYNE2-222	ENST00000556725	DOT1L	Q8TEK3	1739 aa		12.34	□□□□□ -0.43
SYNE2-222	ENST00000556725	RGPD2	P0DJD1	1756 aa		12.33	□□□□□ -0.44
SYNE2-222	ENST00000556725	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	12.33	□□□□□ -0.44
SYNE2-222	ENST00000556725	ATP10D	Q9P241	1426 aa		12.33	□□□□□ -0.44
SYNE2-222	ENST00000556725	ZCRB1	Q8TBF4	217 aa	Known RBP	12.32	□□□□□ -0.44
SYNE2-222	ENST00000556725	EDC4	Q6P2E9	1401 aa	Known RBP	12.31	□□□□□ -0.44
SYNE2-222	ENST00000556725	POTEG	Q6S5H5	508 aa		12.31	□□□□□ -0.44
SYNE2-222	ENST00000556725	ZNF526	Q8TF50	670 aa	Predicted RBP	12.31	□□□□□ -0.44
SYNE2-222	ENST00000556725	FAM208A	Q9UK61	1670 aa	Known RBP	12.3	□□□□□ -0.44
SYNE2-222	ENST00000556725	HOXC9	P31274	260 aa		12.3	□□□□□ -0.44
SYNE2-222	ENST00000556725	GPBP1L1	Q9HC44	474 aa	Predicted RBP	12.3	□□□□□ -0.44
SYNE2-222	ENST00000556725	WWC3	Q9ULE0	1092 aa		12.3	□□□□□ -0.44
SYNE2-222	ENST00000556725	MAP3K19	Q56UN5	1328 aa		12.3	□□□□□ -0.44
SYNE2-222	ENST00000556725		A0A1W2PP64	1363 aa		12.3	□□□□□ -0.44
SYNE2-222	ENST00000556725	MEGF6	O75095	1541 aa		12.29	□□□□□ -0.44
SYNE2-222	ENST00000556725	SMIM5	Q71RC9	77 aa		12.29	□□□□□ -0.44
SYNE2-222	ENST00000556725	TERF2IP	Q9NYB0	399 aa		12.29	□□□□□ -0.44
SYNE2-222	ENST00000556725	USP47	Q96K76	1375 aa		12.29	□□□□□ -0.44
SYNE2-222	ENST00000556725	HSPA6	P17066	643 aa		12.28	□□□□□ -0.44
SYNE2-222	ENST00000556725	AMPH	P49418	695 aa		12.28	□□□□□ -0.44
SYNE2-222	ENST00000556725	NBPF6	Q5VWK0	638 aa		12.28	□□□□□ -0.44
SYNE2-222	ENST00000556725	AMIGO3	Q86WK7	504 aa		12.28	□□□□□ -0.44
SYNE2-222	ENST00000556725	USHBP1	Q8N6Y0	703 aa		12.28	□□□□□ -0.44
SYNE2-222	ENST00000556725	NBPF4	Q96M43	638 aa		12.28	□□□□□ -0.44
SYNE2-222	ENST00000556725	CD2AP	Q9Y5K6	639 aa		12.28	□□□□□ -0.44
SYNE2-222	ENST00000556725	CARD11	Q9BXL7	1154 aa		12.27	□□□□□ -0.45
SYNE2-222	ENST00000556725	PCDH10	Q9P2E7	1040 aa		12.27	□□□□□ -0.45
SYNE2-222	ENST00000556725	ADCY9	O60503	1353 aa		12.27	□□□□□ -0.45
SYNE2-222	ENST00000556725	COG3	Q96JB2	828 aa		12.26	□□□□□ -0.45

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