RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 PTMSP20962 102 aa16.77■□□□□ 0.28
SHMT2-222ENST00000555774 PLEKHM2Q8IWE5 1019 aa16.77■□□□□ 0.28
SHMT2-222ENST00000555774 PTPRUQ92729 1446 aa16.77■□□□□ 0.27
SHMT2-222ENST00000555774 ARHGAP23Q9P227 1491 aa16.76■□□□□ 0.27
SHMT2-222ENST00000555774 FLT4P35916 1363 aa16.76■□□□□ 0.27
SHMT2-222ENST00000555774 LTKP29376 864 aa16.76■□□□□ 0.27
SHMT2-222ENST00000555774 DIP2AQ14689 1571 aa16.76■□□□□ 0.27
SHMT2-222ENST00000555774 KDRP35968 1356 aa16.76■□□□□ 0.27
SHMT2-222ENST00000555774 HSP90AB2PQ58FF8 381 aa16.75■□□□□ 0.27
SHMT2-222ENST00000555774 TTC22Q5TAA0 569 aa16.75■□□□□ 0.27
SHMT2-222ENST00000555774 EID1Q9Y6B2 187 aa16.75■□□□□ 0.27
SHMT2-222ENST00000555774 FMN2Q9NZ56 1722 aa16.75■□□□□ 0.27
SHMT2-222ENST00000555774 RTL1A6NKG5 1358 aa16.75■□□□□ 0.27
SHMT2-222ENST00000555774 FSD2A1L4K1 749 aa16.75■□□□□ 0.27
SHMT2-222ENST00000555774 TRAK2O60296 914 aa16.75■□□□□ 0.27
SHMT2-222ENST00000555774 GSPT1P15170 499 aaKnown RBP16.75■□□□□ 0.27
SHMT2-222ENST00000555774 CEP85Q6P2H3 762 aa16.75■□□□□ 0.27
SHMT2-222ENST00000555774 MCM10Q7L590 875 aa16.75■□□□□ 0.27
SHMT2-222ENST00000555774 FAM43AQ8N2R8 423 aa16.75■□□□□ 0.27
SHMT2-222ENST00000555774 RTN4Q9NQC3 1192 aaKnown RBP16.75■□□□□ 0.27
SHMT2-222ENST00000555774 RIMS1Q86UR5 1692 aaKnown RBP16.75■□□□□ 0.27
SHMT2-222ENST00000555774 K7ELQ4 463 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-222ENST00000555774 ISY1Q9ULR0 285 aaKnown RBP16.74■□□□□ 0.27
SHMT2-222ENST00000555774 MSH6P52701 1360 aa16.74■□□□□ 0.27
SHMT2-222ENST00000555774 GOLGA6L3A6NEY3 463 aa16.74■□□□□ 0.27
SHMT2-222ENST00000555774 TBX22Q9Y458 520 aa16.74■□□□□ 0.27
SHMT2-222ENST00000555774 RAB3GAP1Q15042 981 aa16.73■□□□□ 0.27
SHMT2-222ENST00000555774 GBP4Q96PP9 640 aa16.73■□□□□ 0.27
SHMT2-222ENST00000555774 MAP3K19Q56UN5 1328 aa16.73■□□□□ 0.27
SHMT2-222ENST00000555774 HTATSF1O43719 755 aaKnown RBP16.73■□□□□ 0.27
SHMT2-222ENST00000555774 GAS2L2Q8NHY3 880 aa16.73■□□□□ 0.27
SHMT2-222ENST00000555774 RTF1Q92541 710 aaKnown RBP16.72■□□□□ 0.27
SHMT2-222ENST00000555774 HMMRO75330 724 aa16.71■□□□□ 0.27
SHMT2-222ENST00000555774 RABEP1Q15276 862 aa16.71■□□□□ 0.27
SHMT2-222ENST00000555774 IGSF1Q8N6C5 1336 aa16.71■□□□□ 0.27
SHMT2-222ENST00000555774 CCT4P50991 539 aaKnown RBP16.71■□□□□ 0.27
SHMT2-222ENST00000555774 KRT24Q2M2I5 525 aa16.71■□□□□ 0.27
SHMT2-222ENST00000555774 ANKARQ7Z5J8 1434 aa16.71■□□□□ 0.27
SHMT2-222ENST00000555774 CASC1Q6TDU7 716 aa16.7■□□□□ 0.26
SHMT2-222ENST00000555774 AMOTL2Q9Y2J4 779 aa16.7■□□□□ 0.26
SHMT2-222ENST00000555774 SOS1Q07889 1333 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-222ENST00000555774 LRRC37A3O60309 1634 aa16.7■□□□□ 0.26
SHMT2-222ENST00000555774 SKOR2Q2VWA4 1001 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-222ENST00000555774 TNPO1Q92973 898 aaKnown RBP16.7■□□□□ 0.26
SHMT2-222ENST00000555774 MTHFSDQ2M296 383 aaKnown RBP16.69■□□□□ 0.26
SHMT2-222ENST00000555774 TSPYL4Q9UJ04 414 aa16.69■□□□□ 0.26
SHMT2-222ENST00000555774 SLC4A2P04920 1241 aa16.69■□□□□ 0.26
SHMT2-222ENST00000555774 HSP90AA1P07900 732 aaKnown RBP16.69■□□□□ 0.26
SHMT2-222ENST00000555774 USP54Q70EL1 1684 aa16.68■□□□□ 0.26
SHMT2-222ENST00000555774 MEIS3Q99687 375 aa16.68■□□□□ 0.26
SHMT2-222ENST00000555774 SLC26A8Q96RN1 970 aa16.68■□□□□ 0.26
SHMT2-222ENST00000555774 PIK3C2AO00443 1686 aa16.67■□□□□ 0.26
SHMT2-222ENST00000555774 NUTM2FA1L443 756 aa16.67■□□□□ 0.26
SHMT2-222ENST00000555774 MRE11P49959 708 aa16.67■□□□□ 0.26
SHMT2-222ENST00000555774 CLEC17AQ6ZS10 378 aa16.67■□□□□ 0.26
SHMT2-222ENST00000555774 XRN1Q8IZH2 1706 aaKnown RBP16.67■□□□□ 0.26
SHMT2-222ENST00000555774 CD2BP2O95400 341 aaKnown RBP16.67■□□□□ 0.26
SHMT2-222ENST00000555774 NGDNQ8NEJ9 315 aaKnown RBP16.67■□□□□ 0.26
SHMT2-222ENST00000555774 USP26Q9BXU7 913 aa16.67■□□□□ 0.26
SHMT2-222ENST00000555774 OSBPL3Q9H4L5 887 aa16.67■□□□□ 0.26
SHMT2-222ENST00000555774 BABAM1Q9NWV8 329 aa16.67■□□□□ 0.26
SHMT2-222ENST00000555774 CEP170BQ9Y4F5 1589 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-222ENST00000555774 AMPHP49418 695 aa16.66■□□□□ 0.26
SHMT2-222ENST00000555774 XRCC6P12956 609 aaKnown RBP eCLIP16.65■□□□□ 0.26
SHMT2-222ENST00000555774 EYA1Q99502 592 aa16.65■□□□□ 0.26
SHMT2-222ENST00000555774 SDSP20132 328 aa16.65■□□□□ 0.26
SHMT2-222ENST00000555774 C16orf71Q8IYS4 520 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-222ENST00000555774 STK31Q9BXU1 1019 aa16.65■□□□□ 0.26
SHMT2-222ENST00000555774 FOXO3O43524 673 aa16.64■□□□□ 0.25
SHMT2-222ENST00000555774 REC8O95072 547 aa16.64■□□□□ 0.25
SHMT2-222ENST00000555774 GZF1Q9H116 711 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-222ENST00000555774 GNAI2P04899 355 aa16.63■□□□□ 0.25
SHMT2-222ENST00000555774 RBM42Q9BTD8 480 aaKnown RBP16.63■□□□□ 0.25
SHMT2-222ENST00000555774 PXDNLA1KZ92 1463 aa16.63■□□□□ 0.25
SHMT2-222ENST00000555774 SOX12O15370 315 aa16.63■□□□□ 0.25
SHMT2-222ENST00000555774 CCDC30Q5VVM6 783 aa16.63■□□□□ 0.25
SHMT2-222ENST00000555774 THEMISQ8N1K5 641 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-222ENST00000555774 FAM208AQ9UK61 1670 aaKnown RBP16.63■□□□□ 0.25
SHMT2-222ENST00000555774 GOLGA6L22H0YM25 854 aa16.62■□□□□ 0.25
SHMT2-222ENST00000555774 OTUD7AQ8TE49 926 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-222ENST00000555774 GNAT3A8MTJ3 354 aa16.62■□□□□ 0.25
SHMT2-222ENST00000555774 GNAI3P08754 354 aa16.62■□□□□ 0.25
SHMT2-222ENST00000555774 G2E3Q7L622 706 aa16.62■□□□□ 0.25
SHMT2-222ENST00000555774 NWD1Q149M9 1564 aa16.61■□□□□ 0.25
SHMT2-222ENST00000555774 NUCB2P80303 420 aa16.61■□□□□ 0.25
SHMT2-222ENST00000555774 MIS18AQ9NYP9 233 aa16.61■□□□□ 0.25
SHMT2-222ENST00000555774 N4BP2Q86UW6 1770 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-222ENST00000555774 SMARCA5O60264 1052 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-222ENST00000555774 MAP3K5Q99683 1374 aa16.6■□□□□ 0.25
SHMT2-222ENST00000555774 ERC2O15083 957 aa16.6■□□□□ 0.25
SHMT2-222ENST00000555774 ST18O60284 1047 aa16.6■□□□□ 0.25
SHMT2-222ENST00000555774 HOXC9P31274 260 aa16.6■□□□□ 0.25
SHMT2-222ENST00000555774 CEBPAP49715 358 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-222ENST00000555774 SLC4A10Q6U841 1118 aa16.6■□□□□ 0.25
SHMT2-222ENST00000555774 CWC22Q9HCG8 908 aaKnown RBP16.6■□□□□ 0.25
SHMT2-222ENST00000555774 GRPEL1Q9HAV7 217 aa16.59■□□□□ 0.25
SHMT2-222ENST00000555774 MARF1Q9Y4F3 1742 aaKnown RBP16.59■□□□□ 0.25
SHMT2-222ENST00000555774 PDE1AP54750 535 aa16.59■□□□□ 0.25
SHMT2-222ENST00000555774 NLRP6P59044 892 aa16.59■□□□□ 0.25
SHMT2-222ENST00000555774 FLIIQ13045 1269 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms