RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 STK38Q15208 465 aa9.78□□□□□ -0.84
SYNE2-220ENST00000555612 CADPS2Q86UW7 1296 aa9.78□□□□□ -0.84
SYNE2-220ENST00000555612 AIDAQ96BJ3 306 aa9.78□□□□□ -0.84
SYNE2-220ENST00000555612 NAIPQ13075 1403 aa9.78□□□□□ -0.84
SYNE2-220ENST00000555612 DUSP27Q5VZP5 1158 aa9.78□□□□□ -0.84
SYNE2-220ENST00000555612 EMILIN1Q9Y6C2 1016 aa9.78□□□□□ -0.84
SYNE2-220ENST00000555612 MYCNP04198 464 aaPredicted RBP9.78□□□□□ -0.84
SYNE2-220ENST00000555612 ZNF76P36508 570 aa9.78□□□□□ -0.84
SYNE2-220ENST00000555612 WDR78Q5VTH9 848 aa9.78□□□□□ -0.84
SYNE2-220ENST00000555612 GPTP24298 496 aa9.78□□□□□ -0.84
SYNE2-220ENST00000555612 WDR63Q8IWG1 891 aa9.78□□□□□ -0.84
SYNE2-220ENST00000555612 CUL7Q14999 1698 aa9.78□□□□□ -0.84
SYNE2-220ENST00000555612 GRIN2AQ12879 1464 aa9.78□□□□□ -0.84
SYNE2-220ENST00000555612 HSP90AB2PQ58FF8 381 aa9.77□□□□□ -0.84
SYNE2-220ENST00000555612 C8orf37Q96NL8 207 aa9.77□□□□□ -0.84
SYNE2-220ENST00000555612 CYP46A1Q9Y6A2 500 aa9.77□□□□□ -0.84
SYNE2-220ENST00000555612 POLR3DP05423 398 aaPredicted RBP9.77□□□□□ -0.85
SYNE2-220ENST00000555612 IFIT1P09914 478 aaKnown RBP9.77□□□□□ -0.85
SYNE2-220ENST00000555612 ATF7IPQ6VMQ6 1270 aa9.77□□□□□ -0.85
SYNE2-220ENST00000555612 MSH6P52701 1360 aa9.77□□□□□ -0.85
SYNE2-220ENST00000555612 C6orf229H3BNL8 230 aa9.77□□□□□ -0.85
SYNE2-220ENST00000555612 ZNF622Q969S3 477 aaKnown RBP eCLIP9.77□□□□□ -0.85
SYNE2-220ENST00000555612 SUPT6HQ7KZ85 1726 aaKnown RBP9.77□□□□□ -0.85
SYNE2-220ENST00000555612 SSBP05455 408 aaKnown RBP eCLIP9.77□□□□□ -0.85
SYNE2-220ENST00000555612 LARP1Q6PKG0 1096 aaKnown RBP9.76□□□□□ -0.85
SYNE2-220ENST00000555612 DZIP1Q86YF9 867 aaKnown RBP9.76□□□□□ -0.85
SYNE2-220ENST00000555612 NAT10Q9H0A0 1025 aaKnown RBP9.76□□□□□ -0.85
SYNE2-220ENST00000555612 FMNL2Q96PY5 1086 aa9.76□□□□□ -0.85
SYNE2-220ENST00000555612 ZBTB3Q9H5J0 574 aa9.76□□□□□ -0.85
SYNE2-220ENST00000555612 SYCP1Q15431 976 aa9.76□□□□□ -0.85
SYNE2-220ENST00000555612 TAF7Q15545 349 aaPredicted RBP9.76□□□□□ -0.85
SYNE2-220ENST00000555612 ADGRF5Q8IZF2 1346 aa9.76□□□□□ -0.85
SYNE2-220ENST00000555612 KINO60870 393 aaKnown RBP9.76□□□□□ -0.85
SYNE2-220ENST00000555612 BRPF1P55201 1214 aaPredicted RBP9.76□□□□□ -0.85
SYNE2-220ENST00000555612 NUTM1Q86Y26 1132 aa9.76□□□□□ -0.85
SYNE2-220ENST00000555612 PDCL3Q9H2J4 239 aa9.76□□□□□ -0.85
SYNE2-220ENST00000555612 MAGEC2Q9UBF1 373 aaPredicted RBP9.76□□□□□ -0.85
SYNE2-220ENST00000555612 TMPOP42166 694 aaKnown RBP9.76□□□□□ -0.85
SYNE2-220ENST00000555612 TTLL5Q6EMB2 1281 aa9.76□□□□□ -0.85
SYNE2-220ENST00000555612 CWC27Q6UX04 472 aaKnown RBP9.76□□□□□ -0.85
SYNE2-220ENST00000555612 ZNF396Q96N95 335 aaPredicted RBP9.76□□□□□ -0.85
SYNE2-220ENST00000555612 CAMSAP2Q08AD1 1489 aa9.76□□□□□ -0.85
SYNE2-220ENST00000555612 FANCAO15360 1455 aa9.75□□□□□ -0.85
SYNE2-220ENST00000555612 PDCP20941 246 aa9.75□□□□□ -0.85
SYNE2-220ENST00000555612 RFC4P35249 363 aa9.75□□□□□ -0.85
SYNE2-220ENST00000555612 IFIT5Q13325 482 aaKnown RBP9.75□□□□□ -0.85
SYNE2-220ENST00000555612 HSP90AB3PQ58FF7 597 aa9.75□□□□□ -0.85
SYNE2-220ENST00000555612 CTNNA3Q9UI47 895 aa9.75□□□□□ -0.85
SYNE2-220ENST00000555612 TNRQ92752 1358 aa9.75□□□□□ -0.85
SYNE2-220ENST00000555612 MATR3P43243 847 aaKnown RBP eCLIP9.75□□□□□ -0.85
SYNE2-220ENST00000555612 HSPA2P54652 639 aa9.75□□□□□ -0.85
SYNE2-220ENST00000555612 AKAP2Q9Y2D5 859 aa9.75□□□□□ -0.85
SYNE2-220ENST00000555612 MINDY4BA8MYZ0 360 aa9.74□□□□□ -0.85
SYNE2-220ENST00000555612 PDE3AQ14432 1141 aa9.74□□□□□ -0.85
SYNE2-220ENST00000555612 ACSBG1Q96GR2 724 aa9.74□□□□□ -0.85
SYNE2-220ENST00000555612 KIF14Q15058 1648 aa9.74□□□□□ -0.85
SYNE2-220ENST00000555612 FIBPO43427 364 aa9.74□□□□□ -0.85
SYNE2-220ENST00000555612 THOC2Q8NI27 1593 aaKnown RBP9.74□□□□□ -0.85
SYNE2-220ENST00000555612 MKNK2Q9HBH9 465 aa9.74□□□□□ -0.85
SYNE2-220ENST00000555612 PATL2C9JE40 543 aaKnown RBP9.74□□□□□ -0.85
SYNE2-220ENST00000555612 NOL7Q9UMY1 257 aaKnown RBP9.74□□□□□ -0.85
SYNE2-220ENST00000555612 EXOC6BQ9Y2D4 811 aa9.74□□□□□ -0.85
SYNE2-220ENST00000555612 CT47B1P0C2W7 299 aaPredicted RBP9.74□□□□□ -0.85
SYNE2-220ENST00000555612 ANKRD24Q8TF21 1146 aa9.74□□□□□ -0.85
SYNE2-220ENST00000555612 MVPQ14764 893 aaKnown RBP9.73□□□□□ -0.85
SYNE2-220ENST00000555612 IFNL2Q8IZJ0 200 aa9.73□□□□□ -0.85
SYNE2-220ENST00000555612 SCLT1Q96NL6 688 aa9.73□□□□□ -0.85
SYNE2-220ENST00000555612 GRM1Q13255 1194 aa9.73□□□□□ -0.85
SYNE2-220ENST00000555612 WWC3Q9ULE0 1092 aa9.73□□□□□ -0.85
SYNE2-220ENST00000555612 ANKRD18BA2A2Z9 1011 aa9.73□□□□□ -0.85
SYNE2-220ENST00000555612 GPS2Q13227 327 aa9.73□□□□□ -0.85
SYNE2-220ENST00000555612 ANKRD1Q15327 319 aa9.73□□□□□ -0.85
SYNE2-220ENST00000555612 JMYQ8N9B5 988 aa9.73□□□□□ -0.85
SYNE2-220ENST00000555612 BLOC1S2Q6QNY1 142 aa9.73□□□□□ -0.85
SYNE2-220ENST00000555612 IFT57Q9NWB7 429 aa9.73□□□□□ -0.85
SYNE2-220ENST00000555612 SMC2O95347 1197 aa9.72□□□□□ -0.85
SYNE2-220ENST00000555612 SLC5A1P13866 664 aa9.72□□□□□ -0.85
SYNE2-220ENST00000555612 RABEP1Q15276 862 aa9.72□□□□□ -0.85
SYNE2-220ENST00000555612 TANGO6Q9C0B7 1094 aa9.72□□□□□ -0.85
SYNE2-220ENST00000555612 ZNF287Q9HBT7 754 aa9.72□□□□□ -0.85
SYNE2-220ENST00000555612 IMMTQ16891 758 aaKnown RBP9.72□□□□□ -0.85
SYNE2-220ENST00000555612 NOS1P29475 1434 aa9.72□□□□□ -0.85
SYNE2-220ENST00000555612 NUP160Q12769 1436 aa9.72□□□□□ -0.85
SYNE2-220ENST00000555612 ZNF608Q9ULD9 1512 aaPredicted RBP9.72□□□□□ -0.85
SYNE2-220ENST00000555612 RNF214Q8ND24 703 aa9.72□□□□□ -0.85
SYNE2-220ENST00000555612 JAKMIP1Q96N16 626 aaKnown RBP9.72□□□□□ -0.85
SYNE2-220ENST00000555612 CDKL5O76039 1030 aa9.72□□□□□ -0.85
SYNE2-220ENST00000555612 MCM2P49736 904 aa9.72□□□□□ -0.85
SYNE2-220ENST00000555612 CCDC173Q0VFZ6 552 aa9.72□□□□□ -0.85
SYNE2-220ENST00000555612 FILIP1LQ4L180 1135 aa9.72□□□□□ -0.85
SYNE2-220ENST00000555612 DDX46Q7L014 1031 aaKnown RBP9.72□□□□□ -0.85
SYNE2-220ENST00000555612 CCDC96Q2M329 555 aa9.71□□□□□ -0.85
SYNE2-220ENST00000555612 MAPKBP1O60336 1514 aa9.71□□□□□ -0.85
SYNE2-220ENST00000555612 ACEP12821 1306 aa9.71□□□□□ -0.85
SYNE2-220ENST00000555612 A0A087WZG4 1122 aa9.71□□□□□ -0.85
SYNE2-220ENST00000555612 ME1P48163 572 aa9.71□□□□□ -0.85
SYNE2-220ENST00000555612 CAGE1Q8TC20 777 aa9.71□□□□□ -0.85
SYNE2-220ENST00000555612 FAM135AQ9P2D6 1515 aa9.71□□□□□ -0.85
SYNE2-220ENST00000555612 F6X3S4 739 aa9.71□□□□□ -0.86
SYNE2-220ENST00000555612 TNNT3P45378 269 aaPredicted RBP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms