RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 EZH2Q15910 746 aaKnown RBP18.71■□□□□ 0.59
SHMT2-219ENST00000555563 CC2D1BQ5T0F9 858 aaKnown RBP18.71■□□□□ 0.59
SHMT2-219ENST00000555563 RAPGEF4Q8WZA2 1011 aa18.71■□□□□ 0.59
SHMT2-219ENST00000555563 CAMKK2Q96RR4 588 aa18.71■□□□□ 0.59
SHMT2-219ENST00000555563 NUP188Q5SRE5 1749 aa18.71■□□□□ 0.59
SHMT2-219ENST00000555563 DDX54Q8TDD1 881 aaKnown RBP18.7■□□□□ 0.58
SHMT2-219ENST00000555563 DOT1LQ8TEK3 1739 aa18.7■□□□□ 0.58
SHMT2-219ENST00000555563 EYA1Q99502 592 aa18.7■□□□□ 0.58
SHMT2-219ENST00000555563 BCL11BQ9C0K0 894 aaPredicted RBP18.7■□□□□ 0.58
SHMT2-219ENST00000555563 TATP17735 454 aaPredicted RBP18.69■□□□□ 0.58
SHMT2-219ENST00000555563 ZCRB1Q8TBF4 217 aaKnown RBP18.69■□□□□ 0.58
SHMT2-219ENST00000555563 BTAF1O14981 1849 aa18.67■□□□□ 0.58
SHMT2-219ENST00000555563 PSDA5PKW4 1024 aaPredicted RBP18.67■□□□□ 0.58
SHMT2-219ENST00000555563 KCNQ2O43526 872 aa18.67■□□□□ 0.58
SHMT2-219ENST00000555563 CNGB1Q14028 1251 aaPredicted RBP18.67■□□□□ 0.58
SHMT2-219ENST00000555563 ACSBG1Q96GR2 724 aa18.67■□□□□ 0.58
SHMT2-219ENST00000555563 IGSF1Q8N6C5 1336 aa18.66■□□□□ 0.58
SHMT2-219ENST00000555563 PCDH11XQ9BZA7 1347 aa18.65■□□□□ 0.58
SHMT2-219ENST00000555563 PCDH11YQ9BZA8 1340 aa18.65■□□□□ 0.58
SHMT2-219ENST00000555563 MTHFSP49914 203 aa18.64■□□□□ 0.57
SHMT2-219ENST00000555563 TOGARAM1Q9Y4F4 1720 aa18.63■□□□□ 0.57
SHMT2-219ENST00000555563 PLSCR1O15162 318 aa18.62■□□□□ 0.57
SHMT2-219ENST00000555563 COL3A1P02461 1466 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-219ENST00000555563 PLEKHG2Q9H7P9 1386 aa18.6■□□□□ 0.57
SHMT2-219ENST00000555563 CYP27B1O15528 508 aa18.6■□□□□ 0.57
SHMT2-219ENST00000555563 IL13P35225 146 aa18.6■□□□□ 0.57
SHMT2-219ENST00000555563 AEBP1Q8IUX7 1158 aa18.59■□□□□ 0.57
SHMT2-219ENST00000555563 KAT6BQ8WYB5 2073 aa18.58■□□□□ 0.57
SHMT2-219ENST00000555563 PRIM1P49642 420 aaKnown RBP18.58■□□□□ 0.56
SHMT2-219ENST00000555563 R3HDM1Q15032 1099 aaKnown RBP18.58■□□□□ 0.56
SHMT2-219ENST00000555563 SYTL4Q96C24 671 aaPredicted RBP18.58■□□□□ 0.56
SHMT2-219ENST00000555563 SPG7Q9UQ90 795 aa18.58■□□□□ 0.56
SHMT2-219ENST00000555563 KDRP35968 1356 aa18.57■□□□□ 0.56
SHMT2-219ENST00000555563 ZEB1P37275 1124 aaPredicted RBP18.57■□□□□ 0.56
SHMT2-219ENST00000555563 PROM2Q8N271 834 aa18.57■□□□□ 0.56
SHMT2-219ENST00000555563 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.57■□□□□ 0.56
SHMT2-219ENST00000555563 LRP5O75197 1615 aa18.56■□□□□ 0.56
SHMT2-219ENST00000555563 TXNRD1Q16881 649 aa18.56■□□□□ 0.56
SHMT2-219ENST00000555563 SULT6B1Q6IMI4 303 aa18.56■□□□□ 0.56
SHMT2-219ENST00000555563 PAPPAQ13219 1627 aa18.56■□□□□ 0.56
SHMT2-219ENST00000555563 ANO8Q9HCE9 1232 aaPredicted RBP18.55■□□□□ 0.56
SHMT2-219ENST00000555563 ITGB4P16144 1822 aa18.55■□□□□ 0.56
SHMT2-219ENST00000555563 LY75O60449 1722 aa18.54■□□□□ 0.56
SHMT2-219ENST00000555563 DIAPH1O60610 1272 aaKnown RBP18.54■□□□□ 0.56
SHMT2-219ENST00000555563 PHKG2P15735 406 aa18.53■□□□□ 0.56
SHMT2-219ENST00000555563 NKX1-1Q15270 411 aaPredicted RBP18.53■□□□□ 0.56
SHMT2-219ENST00000555563 NBPF14Q5TI25 921 aa18.53■□□□□ 0.56
SHMT2-219ENST00000555563 PPP2R1AP30153 589 aa18.51■□□□□ 0.55
SHMT2-219ENST00000555563 IFNL2Q8IZJ0 200 aa18.51■□□□□ 0.55
SHMT2-219ENST00000555563 HMOX1P09601 288 aa18.5■□□□□ 0.55
SHMT2-219ENST00000555563 AMOTQ4VCS5 1084 aa18.5■□□□□ 0.55
SHMT2-219ENST00000555563 PLEKHO1Q53GL0 409 aaPredicted RBP18.5■□□□□ 0.55
SHMT2-219ENST00000555563 ZNF530Q6P9A1 599 aaPredicted RBP18.5■□□□□ 0.55
SHMT2-219ENST00000555563 KDM6AO15550 1401 aaPredicted RBP18.49■□□□□ 0.55
SHMT2-219ENST00000555563 CASZ1Q86V15 1759 aa18.48■□□□□ 0.55
SHMT2-219ENST00000555563 DDX10Q13206 875 aaKnown RBP18.48■□□□□ 0.55
SHMT2-219ENST00000555563 MPRIPQ6WCQ1 1025 aa18.48■□□□□ 0.55
SHMT2-219ENST00000555563 CFAP53Q96M91 514 aa18.48■□□□□ 0.55
SHMT2-219ENST00000555563 LRRC4BQ9NT99 713 aa18.48■□□□□ 0.55
SHMT2-219ENST00000555563 PALLDQ8WX93 1383 aa18.47■□□□□ 0.55
SHMT2-219ENST00000555563 U2SURPO15042 1029 aaKnown RBP18.47■□□□□ 0.55
SHMT2-219ENST00000555563 SLC27A3Q5K4L6 730 aa18.47■□□□□ 0.55
SHMT2-219ENST00000555563 KCNQ4P56696 695 aa18.46■□□□□ 0.55
SHMT2-219ENST00000555563 PIGBQ92521 554 aa18.46■□□□□ 0.55
SHMT2-219ENST00000555563 STK32BQ9NY57 414 aa18.46■□□□□ 0.55
SHMT2-219ENST00000555563 C5P01031 1676 aa18.44■□□□□ 0.54
SHMT2-219ENST00000555563 HSP90AB1P08238 724 aaKnown RBP18.44■□□□□ 0.54
SHMT2-219ENST00000555563 SLC15A2Q16348 729 aa18.44■□□□□ 0.54
SHMT2-219ENST00000555563 C1orf141Q5JVX7 400 aa18.44■□□□□ 0.54
SHMT2-219ENST00000555563 DCAF5Q96JK2 942 aa18.44■□□□□ 0.54
SHMT2-219ENST00000555563 TMOD3Q9NYL9 352 aa18.44■□□□□ 0.54
SHMT2-219ENST00000555563 SCN11AQ9UI33 1791 aa18.44■□□□□ 0.54
SHMT2-219ENST00000555563 ZNF827Q17R98 1081 aa18.43■□□□□ 0.54
SHMT2-219ENST00000555563 CCNL1Q9UK58 526 aaPredicted RBP18.43■□□□□ 0.54
SHMT2-219ENST00000555563 TUBGCP6Q96RT7 1819 aa18.43■□□□□ 0.54
SHMT2-219ENST00000555563 QSER1Q2KHR3 1735 aa18.42■□□□□ 0.54
SHMT2-219ENST00000555563 TAF1LQ8IZX4 1826 aa18.42■□□□□ 0.54
SHMT2-219ENST00000555563 SMARCC1Q92922 1105 aaPredicted RBP18.41■□□□□ 0.54
SHMT2-219ENST00000555563 PDGFDQ9GZP0 370 aaPredicted RBP18.41■□□□□ 0.54
SHMT2-219ENST00000555563 VIRMAQ69YN4 1812 aaKnown RBP18.41■□□□□ 0.54
SHMT2-219ENST00000555563 ADAMTS7Q9UKP4 1686 aa18.41■□□□□ 0.54
SHMT2-219ENST00000555563 MRC1P22897 1456 aa18.4■□□□□ 0.54
SHMT2-219ENST00000555563 ERVV-2B6SEH9 535 aa18.4■□□□□ 0.54
SHMT2-219ENST00000555563 MTHFSDQ2M296 383 aaKnown RBP18.4■□□□□ 0.54
SHMT2-219ENST00000555563 AKAP4Q5JQC9 854 aa18.4■□□□□ 0.54
SHMT2-219ENST00000555563 AKT1S1Q96B36 256 aa18.4■□□□□ 0.54
SHMT2-219ENST00000555563 NUDCQ9Y266 331 aa18.4■□□□□ 0.54
SHMT2-219ENST00000555563 RSPH6AQ9H0K4 717 aa18.39■□□□□ 0.53
SHMT2-219ENST00000555563 ASAP1Q9ULH1 1129 aa18.39■□□□□ 0.53
SHMT2-219ENST00000555563 U2AF1L5P0DN76 240 aaPredicted RBP18.38■□□□□ 0.53
SHMT2-219ENST00000555563 PRKAR2BP31323 418 aa18.38■□□□□ 0.53
SHMT2-219ENST00000555563 U2AF1Q01081 240 aaKnown RBP eCLIP18.38■□□□□ 0.53
SHMT2-219ENST00000555563 RALBP1Q15311 655 aa18.38■□□□□ 0.53
SHMT2-219ENST00000555563 C4BP0C0L5 1744 aa18.37■□□□□ 0.53
SHMT2-219ENST00000555563 CABP4P57796 275 aa18.37■□□□□ 0.53
SHMT2-219ENST00000555563 ATG3Q9NT62 314 aa18.37■□□□□ 0.53
SHMT2-219ENST00000555563 LOC102724428A0A0B4J2F2 783 aa18.36■□□□□ 0.53
SHMT2-219ENST00000555563 SIK1P57059 783 aa18.36■□□□□ 0.53
SHMT2-219ENST00000555563 ZNF831Q5JPB2 1677 aa18.35■□□□□ 0.53
SHMT2-219ENST00000555563 MAP3K5Q99683 1374 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms