RNA–Protein interactions for RNA: ENST00000555317.5

SRP54-206, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 644 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-206ENST00000555317 PARD3Q8TEW0 1356 aa16.37■□□□□ 0.21
SRP54-206ENST00000555317 PCDH11XQ9BZA7 1347 aa16.36■□□□□ 0.21
SRP54-206ENST00000555317 PCDH11YQ9BZA8 1340 aa16.36■□□□□ 0.21
SRP54-206ENST00000555317 NHSQ6T4R5 1651 aa16.35■□□□□ 0.21
SRP54-206ENST00000555317 MTHFSP49914 203 aa16.35■□□□□ 0.21
SRP54-206ENST00000555317 ACSBG1Q96GR2 724 aa16.35■□□□□ 0.21
SRP54-206ENST00000555317 NCAPD2Q15021 1401 aa16.35■□□□□ 0.21
SRP54-206ENST00000555317 SHANK3Q9BYB0 1731 aa16.34■□□□□ 0.21
SRP54-206ENST00000555317 EZH2Q15910 746 aaKnown RBP16.34■□□□□ 0.21
SRP54-206ENST00000555317 SPG7Q9UQ90 795 aa16.34■□□□□ 0.21
SRP54-206ENST00000555317 SYTL4Q96C24 671 aaPredicted RBP16.33■□□□□ 0.2
SRP54-206ENST00000555317 IGSF1Q8N6C5 1336 aa16.33■□□□□ 0.2
SRP54-206ENST00000555317 PKD1L3Q7Z443 1732 aa16.33■□□□□ 0.2
SRP54-206ENST00000555317 RGPD3A6NKT7 1758 aaPredicted RBP16.33■□□□□ 0.2
SRP54-206ENST00000555317 RGPD4Q7Z3J3 1758 aa16.33■□□□□ 0.2
SRP54-206ENST00000555317 CAMKK2Q96RR4 588 aa16.32■□□□□ 0.2
SRP54-206ENST00000555317 DOT1LQ8TEK3 1739 aa16.31■□□□□ 0.2
SRP54-206ENST00000555317 CFAP53Q96M91 514 aa16.31■□□□□ 0.2
SRP54-206ENST00000555317 PLEKHG2Q9H7P9 1386 aa16.3■□□□□ 0.2
SRP54-206ENST00000555317 KCNQ2O43526 872 aa16.3■□□□□ 0.2
SRP54-206ENST00000555317 DIAPH1O60610 1272 aaKnown RBP16.3■□□□□ 0.2
SRP54-206ENST00000555317 BTAF1O14981 1849 aa16.3■□□□□ 0.2
SRP54-206ENST00000555317 RREB1Q92766 1687 aa16.3■□□□□ 0.2
SRP54-206ENST00000555317 PLSCR1O15162 318 aa16.29■□□□□ 0.2
SRP54-206ENST00000555317 IL13P35225 146 aa16.29■□□□□ 0.2
SRP54-206ENST00000555317 DDX10Q13206 875 aaKnown RBP16.29■□□□□ 0.2
SRP54-206ENST00000555317 SULT6B1Q6IMI4 303 aa16.29■□□□□ 0.2
SRP54-206ENST00000555317 PTF1AQ7RTS3 328 aa16.29■□□□□ 0.2
SRP54-206ENST00000555317 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.29■□□□□ 0.23e-8■□□□□ 8.4
SRP54-206ENST00000555317 PLEKHO1Q53GL0 409 aaPredicted RBP16.28■□□□□ 0.2
SRP54-206ENST00000555317 NBPF14Q5TI25 921 aa16.28■□□□□ 0.2
SRP54-206ENST00000555317 NUP188Q5SRE5 1749 aa16.28■□□□□ 0.2
SRP54-206ENST00000555317 PRIM1P49642 420 aaKnown RBP16.27■□□□□ 0.2
SRP54-206ENST00000555317 U2SURPO15042 1029 aaKnown RBP16.26■□□□□ 0.19
SRP54-206ENST00000555317 CYP27B1O15528 508 aa16.26■□□□□ 0.19
SRP54-206ENST00000555317 AMOTQ4VCS5 1084 aa16.26■□□□□ 0.19
SRP54-206ENST00000555317 AEBP1Q8IUX7 1158 aa16.26■□□□□ 0.19
SRP54-206ENST00000555317 IFNL2Q8IZJ0 200 aa16.26■□□□□ 0.19
SRP54-206ENST00000555317 PPP2R1AP30153 589 aa16.25■□□□□ 0.19
SRP54-206ENST00000555317 ZNF530Q6P9A1 599 aaPredicted RBP16.25■□□□□ 0.19
SRP54-206ENST00000555317 KDRP35968 1356 aa16.25■□□□□ 0.19
SRP54-206ENST00000555317 PSDA5PKW4 1024 aaPredicted RBP16.24■□□□□ 0.19
SRP54-206ENST00000555317 HSP90AB1P08238 724 aaKnown RBP16.24■□□□□ 0.19
SRP54-206ENST00000555317 HMOX1P09601 288 aa16.24■□□□□ 0.19
SRP54-206ENST00000555317 C1orf141Q5JVX7 400 aa16.24■□□□□ 0.19
SRP54-206ENST00000555317 NUDCQ9Y266 331 aa16.24■□□□□ 0.19
SRP54-206ENST00000555317 COL3A1P02461 1466 aaPredicted RBP16.23■□□□□ 0.19
SRP54-206ENST00000555317 PHKG2P15735 406 aa16.23■□□□□ 0.19
SRP54-206ENST00000555317 TXNRD1Q16881 649 aa16.23■□□□□ 0.19
SRP54-206ENST00000555317 R3HDM1Q15032 1099 aaKnown RBP16.22■□□□□ 0.19
SRP54-206ENST00000555317 MPRIPQ6WCQ1 1025 aa16.22■□□□□ 0.19
SRP54-206ENST00000555317 ITGB4P16144 1822 aa16.22■□□□□ 0.19
SRP54-206ENST00000555317 NKX1-1Q15270 411 aaPredicted RBP16.21■□□□□ 0.19
SRP54-206ENST00000555317 RALBP1Q15311 655 aa16.21■□□□□ 0.19
SRP54-206ENST00000555317 TOGARAM1Q9Y4F4 1720 aa16.21■□□□□ 0.19
SRP54-206ENST00000555317 SRCAPQ6ZRS2 3230 aa16.2■□□□□ 0.18
SRP54-206ENST00000555317 STK32BQ9NY57 414 aa16.2■□□□□ 0.18
SRP54-206ENST00000555317 TMOD3Q9NYL9 352 aa16.2■□□□□ 0.18
SRP54-206ENST00000555317 SLC27A3Q5K4L6 730 aa16.19■□□□□ 0.18
SRP54-206ENST00000555317 DCAF5Q96JK2 942 aa16.19■□□□□ 0.18
SRP54-206ENST00000555317 U2AF1L5P0DN76 240 aaPredicted RBP16.18■□□□□ 0.18
SRP54-206ENST00000555317 U2AF1Q01081 240 aaKnown RBP eCLIP16.18■□□□□ 0.18
SRP54-206ENST00000555317 PROM2Q8N271 834 aa16.18■□□□□ 0.18
SRP54-206ENST00000555317 SMARCC1Q92922 1105 aaPredicted RBP16.18■□□□□ 0.18
SRP54-206ENST00000555317 CCNL1Q9UK58 526 aaPredicted RBP16.17■□□□□ 0.18
SRP54-206ENST00000555317 LY75O60449 1722 aa16.16■□□□□ 0.18
SRP54-206ENST00000555317 PALLDQ8WX93 1383 aa16.16■□□□□ 0.18
SRP54-206ENST00000555317 ZNF316A6NFI3 1004 aaPredicted RBP16.16■□□□□ 0.18
SRP54-206ENST00000555317 ERVV-2B6SEH9 535 aa16.16■□□□□ 0.18
SRP54-206ENST00000555317 HMGB2P26583 209 aaKnown RBP16.16■□□□□ 0.18
SRP54-206ENST00000555317 AKAP4Q5JQC9 854 aa16.16■□□□□ 0.18
SRP54-206ENST00000555317 CABP4P57796 275 aa16.15■□□□□ 0.18
SRP54-206ENST00000555317 PIGBQ92521 554 aa16.15■□□□□ 0.18
SRP54-206ENST00000555317 ANO8Q9HCE9 1232 aaPredicted RBP16.15■□□□□ 0.18
SRP54-206ENST00000555317 NEFMP07197 916 aa16.14■□□□□ 0.17
SRP54-206ENST00000555317 GAS2L2Q8NHY3 880 aa16.14■□□□□ 0.17
SRP54-206ENST00000555317 MYBBP1AQ9BQG0 1328 aaKnown RBP16.14■□□□□ 0.17
SRP54-206ENST00000555317 KDM6AO15550 1401 aaPredicted RBP16.13■□□□□ 0.17
SRP54-206ENST00000555317 PRKAR2BP31323 418 aa16.13■□□□□ 0.17
SRP54-206ENST00000555317 SLC15A2Q16348 729 aa16.13■□□□□ 0.17
SRP54-206ENST00000555317 SCN11AQ9UI33 1791 aa16.13■□□□□ 0.17
SRP54-206ENST00000555317 VIRMAQ69YN4 1812 aaKnown RBP16.12■□□□□ 0.17
SRP54-206ENST00000555317 PAPPAQ13219 1627 aa16.12■□□□□ 0.17
SRP54-206ENST00000555317 MTHFSDQ2M296 383 aaKnown RBP16.12■□□□□ 0.17
SRP54-206ENST00000555317 LRRC4BQ9NT99 713 aa16.12■□□□□ 0.17
SRP54-206ENST00000555317 FCHSD2O94868 740 aa16.11■□□□□ 0.17
SRP54-206ENST00000555317 KCNQ4P56696 695 aa16.11■□□□□ 0.17
SRP54-206ENST00000555317 RSPH6AQ9H0K4 717 aa16.11■□□□□ 0.17
SRP54-206ENST00000555317 TFCP2L1Q9NZI6 479 aa16.1■□□□□ 0.17
SRP54-206ENST00000555317 ASAP1Q9ULH1 1129 aa16.1■□□□□ 0.17
SRP54-206ENST00000555317 C5P01031 1676 aa16.1■□□□□ 0.17
SRP54-206ENST00000555317 MAP3K5Q99683 1374 aa16.1■□□□□ 0.17
SRP54-206ENST00000555317 LRP5O75197 1615 aa16.09■□□□□ 0.17
SRP54-206ENST00000555317 PNNQ9H307 717 aaKnown RBP16.09■□□□□ 0.17
SRP54-206ENST00000555317 LOC102724428A0A0B4J2F2 783 aa16.08■□□□□ 0.16
SRP54-206ENST00000555317 GNAT3A8MTJ3 354 aa16.08■□□□□ 0.16
SRP54-206ENST00000555317 RNMTO43148 476 aaKnown RBP16.08■□□□□ 0.16
SRP54-206ENST00000555317 SIK1P57059 783 aa16.08■□□□□ 0.16
SRP54-206ENST00000555317 ZNF827Q17R98 1081 aa16.08■□□□□ 0.16
SRP54-206ENST00000555317 NFATC2IPQ8NCF5 419 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms