RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 MON2Q7Z3U7 1717 aa13.89□□□□□ -0.19
SCFD1-215ENST00000555259 MSL1Q68DK7 614 aa13.88□□□□□ -0.19
SCFD1-215ENST00000555259 NME9Q86XW9 330 aa13.88□□□□□ -0.19
SCFD1-215ENST00000555259 CCNL1Q9UK58 526 aaPredicted RBP13.88□□□□□ -0.19
SCFD1-215ENST00000555259 CD2APQ9Y5K6 639 aa13.88□□□□□ -0.19
SCFD1-215ENST00000555259 DOT1LQ8TEK3 1739 aa13.87□□□□□ -0.19
SCFD1-215ENST00000555259 SBNO2Q9Y2G9 1366 aa13.86□□□□□ -0.19
SCFD1-215ENST00000555259 KIF3CO14782 793 aa13.84□□□□□ -0.19
SCFD1-215ENST00000555259 CD163L1Q9NR16 1453 aa13.84□□□□□ -0.19
SCFD1-215ENST00000555259 IP6K1Q92551 441 aa13.83□□□□□ -0.19
SCFD1-215ENST00000555259 LTV1Q96GA3 475 aaPredicted RBP13.83□□□□□ -0.19
SCFD1-215ENST00000555259 USP47Q96K76 1375 aa13.83□□□□□ -0.19
SCFD1-215ENST00000555259 FAM208AQ9UK61 1670 aaKnown RBP13.83□□□□□ -0.19
SCFD1-215ENST00000555259 PCNTO95613 3336 aa13.82□□□□□ -0.2
SCFD1-215ENST00000555259 APLP1P51693 650 aa13.82□□□□□ -0.2
SCFD1-215ENST00000555259 ZCRB1Q8TBF4 217 aaKnown RBP13.82□□□□□ -0.2
SCFD1-215ENST00000555259 IGSF1Q8N6C5 1336 aa13.81□□□□□ -0.2
SCFD1-215ENST00000555259 WWC3Q9ULE0 1092 aa13.81□□□□□ -0.2
SCFD1-215ENST00000555259 ROCK2O75116 1388 aaKnown RBP13.8□□□□□ -0.2
SCFD1-215ENST00000555259 C5P01031 1676 aa13.8□□□□□ -0.2
SCFD1-215ENST00000555259 DNAJC5GQ8N7S2 189 aa13.8□□□□□ -0.2
SCFD1-215ENST00000555259 FLAD1Q8NFF5 587 aa13.8□□□□□ -0.2
SCFD1-215ENST00000555259 L3MBTL2Q969R5 705 aa13.8□□□□□ -0.2
SCFD1-215ENST00000555259 MEGF6O75095 1541 aa13.8□□□□□ -0.2
SCFD1-215ENST00000555259 EDC4Q6P2E9 1401 aaKnown RBP13.8□□□□□ -0.2
SCFD1-215ENST00000555259 HDGFL2Q7Z4V5 671 aaPredicted RBP13.79□□□□□ -0.2
SCFD1-215ENST00000555259 TMC1Q8TDI8 760 aa13.79□□□□□ -0.2
SCFD1-215ENST00000555259 HMGB2P26583 209 aaKnown RBP13.77□□□□□ -0.21
SCFD1-215ENST00000555259 SLC12A5Q9H2X9 1139 aa13.77□□□□□ -0.21
SCFD1-215ENST00000555259 TOMM70O94826 608 aa13.76□□□□□ -0.21
SCFD1-215ENST00000555259 HOXC9P31274 260 aa13.76□□□□□ -0.21
SCFD1-215ENST00000555259 AMIGO3Q86WK7 504 aa13.76□□□□□ -0.21
SCFD1-215ENST00000555259 TAF1LQ8IZX4 1826 aa13.76□□□□□ -0.21
SCFD1-215ENST00000555259 A0A1W2PP64 1363 aa13.76□□□□□ -0.21
SCFD1-215ENST00000555259 PALLDQ8WX93 1383 aa13.76□□□□□ -0.21
SCFD1-215ENST00000555259 CICQ96RK0 1608 aaPredicted RBP13.76□□□□□ -0.21
SCFD1-215ENST00000555259 MAP3K19Q56UN5 1328 aa13.76□□□□□ -0.21
SCFD1-215ENST00000555259 RGPD2P0DJD1 1756 aa13.75□□□□□ -0.21
SCFD1-215ENST00000555259 AK7Q96M32 723 aa13.75□□□□□ -0.21
SCFD1-215ENST00000555259 TERF2IPQ9NYB0 399 aa13.75□□□□□ -0.21
SCFD1-215ENST00000555259 C4BP0C0L5 1744 aa13.74□□□□□ -0.21
SCFD1-215ENST00000555259 TOGARAM1Q9Y4F4 1720 aa13.74□□□□□ -0.21
SCFD1-215ENST00000555259 CGNL1Q0VF96 1302 aa13.74□□□□□ -0.21
SCFD1-215ENST00000555259 AMPHP49418 695 aa13.74□□□□□ -0.21
SCFD1-215ENST00000555259 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.73□□□□□ -0.21
SCFD1-215ENST00000555259 PHF14O94880 888 aa13.73□□□□□ -0.21
SCFD1-215ENST00000555259 COL13A1Q5TAT6 717 aaPredicted RBP13.73□□□□□ -0.21
SCFD1-215ENST00000555259 NBPF6Q5VWK0 638 aa13.73□□□□□ -0.21
SCFD1-215ENST00000555259 SMIM5Q71RC9 77 aa13.73□□□□□ -0.21
SCFD1-215ENST00000555259 NBPF4Q96M43 638 aa13.73□□□□□ -0.21
SCFD1-215ENST00000555259 FBLN1P23142 703 aa13.72□□□□□ -0.21
SCFD1-215ENST00000555259 MPRIPQ6WCQ1 1025 aa13.72□□□□□ -0.21
SCFD1-215ENST00000555259 UBR3Q6ZT12 1888 aa13.72□□□□□ -0.21
SCFD1-215ENST00000555259 USHBP1Q8N6Y0 703 aa13.71□□□□□ -0.21
SCFD1-215ENST00000555259 RAPGEF4Q8WZA2 1011 aa13.71□□□□□ -0.21
SCFD1-215ENST00000555259 COG3Q96JB2 828 aa13.71□□□□□ -0.21
SCFD1-215ENST00000555259 NSD3Q9BZ95 1437 aa13.71□□□□□ -0.21
SCFD1-215ENST00000555259 SSFA2P28290 1259 aa13.71□□□□□ -0.22
SCFD1-215ENST00000555259 NMRK2Q9NPI5 230 aa13.71□□□□□ -0.22
SCFD1-215ENST00000555259 PCDH11XQ9BZA7 1347 aa13.7□□□□□ -0.22
SCFD1-215ENST00000555259 PCDH11YQ9BZA8 1340 aa13.7□□□□□ -0.22
SCFD1-215ENST00000555259 WDR90Q96KV7 1748 aa13.7□□□□□ -0.22
SCFD1-215ENST00000555259 CAPN15O75808 1086 aa13.7□□□□□ -0.22
SCFD1-215ENST00000555259 JMYQ8N9B5 988 aa13.7□□□□□ -0.22
SCFD1-215ENST00000555259 SMARCC1Q92922 1105 aaPredicted RBP13.7□□□□□ -0.22
SCFD1-215ENST00000555259 KLRG1Q96E93 195 aa13.7□□□□□ -0.22
SCFD1-215ENST00000555259 PXDNLA1KZ92 1463 aa13.69□□□□□ -0.22
SCFD1-215ENST00000555259 RTL1A6NKG5 1358 aa13.69□□□□□ -0.22
SCFD1-215ENST00000555259 TATP17735 454 aaPredicted RBP13.69□□□□□ -0.22
SCFD1-215ENST00000555259 HTRA3P83110 453 aa13.69□□□□□ -0.22
SCFD1-215ENST00000555259 RBM46Q8TBY0 533 aaKnown RBP13.68□□□□□ -0.22
SCFD1-215ENST00000555259 SMG6Q86US8 1419 aaKnown RBP13.68□□□□□ -0.22
SCFD1-215ENST00000555259 CYP27B1O15528 508 aa13.67□□□□□ -0.22
SCFD1-215ENST00000555259 RRS1Q15050 365 aaKnown RBP13.67□□□□□ -0.22
SCFD1-215ENST00000555259 SIN3AQ96ST3 1273 aa13.67□□□□□ -0.22
SCFD1-215ENST00000555259 BCS1LQ9Y276 419 aa13.67□□□□□ -0.22
SCFD1-215ENST00000555259 KIAA1551Q9HCM1 1747 aa13.67□□□□□ -0.22
SCFD1-215ENST00000555259 MMP10P09238 476 aa13.66□□□□□ -0.22
SCFD1-215ENST00000555259 LINC00116Q8NCU8 138 aa13.66□□□□□ -0.22
SCFD1-215ENST00000555259 PUS7Q96PZ0 661 aaKnown RBP13.66□□□□□ -0.22
SCFD1-215ENST00000555259 CARD11Q9BXL7 1154 aa13.66□□□□□ -0.22
SCFD1-215ENST00000555259 ITGB4P16144 1822 aa13.66□□□□□ -0.22
SCFD1-215ENST00000555259 KIF13BQ9NQT8 1826 aa13.66□□□□□ -0.22
SCFD1-215ENST00000555259 LOC102724428A0A0B4J2F2 783 aa13.66□□□□□ -0.22
SCFD1-215ENST00000555259 PRELPP51888 382 aa13.66□□□□□ -0.22
SCFD1-215ENST00000555259 SIK1P57059 783 aa13.66□□□□□ -0.22
SCFD1-215ENST00000555259 TGFB2P61812 414 aa13.66□□□□□ -0.22
SCFD1-215ENST00000555259 ARHGAP27Q6ZUM4 889 aa13.66□□□□□ -0.22
SCFD1-215ENST00000555259 TNS4Q8IZW8 715 aa13.66□□□□□ -0.22
SCFD1-215ENST00000555259 PIGBQ92521 554 aa13.66□□□□□ -0.22
SCFD1-215ENST00000555259 MAP2P11137 1827 aaKnown RBP13.65□□□□□ -0.22
SCFD1-215ENST00000555259 A0A0G2JLW4 131 aa13.65□□□□□ -0.22
SCFD1-215ENST00000555259 GNPATO15228 680 aa13.65□□□□□ -0.22
SCFD1-215ENST00000555259 FSTL1Q12841 308 aa13.65□□□□□ -0.22
SCFD1-215ENST00000555259 N4BP2Q86UW6 1770 aaPredicted RBP13.64□□□□□ -0.23
SCFD1-215ENST00000555259 C16orf71Q8IYS4 520 aaPredicted RBP13.64□□□□□ -0.23
SCFD1-215ENST00000555259 NEUROD1Q13562 356 aa13.63□□□□□ -0.23
SCFD1-215ENST00000555259 C10orf71Q711Q0 1435 aa13.63□□□□□ -0.23
SCFD1-215ENST00000555259 INSRP06213 1382 aa13.62□□□□□ -0.23
SCFD1-215ENST00000555259 ITPK1Q13572 414 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms