RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 RAPGEF4Q8WZA2 1011 aa22.02■■□□□ 1.12
CCDC88C-209ENST00000554872 PKD1L3Q7Z443 1732 aa22.02■■□□□ 1.12
CCDC88C-209ENST00000554872 BTAF1O14981 1849 aa22.01■■□□□ 1.11
CCDC88C-209ENST00000554872 PSDA5PKW4 1024 aaPredicted RBP22.01■■□□□ 1.11
CCDC88C-209ENST00000554872 KCNQ2O43526 872 aa22.01■■□□□ 1.11
CCDC88C-209ENST00000554872 KNSTRNQ9Y448 316 aa22.01■■□□□ 1.11
CCDC88C-209ENST00000554872 AMER1Q5JTC6 1135 aaPredicted RBP22■■□□□ 1.11
CCDC88C-209ENST00000554872 PROM2Q8N271 834 aa22■■□□□ 1.11
CCDC88C-209ENST00000554872 TATP17735 454 aaPredicted RBP21.99■■□□□ 1.11
CCDC88C-209ENST00000554872 USHBP1Q8N6Y0 703 aa21.99■■□□□ 1.11
CCDC88C-209ENST00000554872 DOT1LQ8TEK3 1739 aa21.98■■□□□ 1.11
CCDC88C-209ENST00000554872 DDX54Q8TDD1 881 aaKnown RBP21.98■■□□□ 1.11
CCDC88C-209ENST00000554872 PCDH11XQ9BZA7 1347 aa21.98■■□□□ 1.11
CCDC88C-209ENST00000554872 PCDH11YQ9BZA8 1340 aa21.98■■□□□ 1.11
CCDC88C-209ENST00000554872 PPM1GO15355 546 aaPredicted RBP21.97■■□□□ 1.11
CCDC88C-209ENST00000554872 PER1O15534 1290 aaPredicted RBP21.97■■□□□ 1.11
CCDC88C-209ENST00000554872 TXNRD1Q16881 649 aa21.97■■□□□ 1.11
CCDC88C-209ENST00000554872 ACSBG1Q96GR2 724 aa21.97■■□□□ 1.11
CCDC88C-209ENST00000554872 PAPPAQ13219 1627 aa21.97■■□□□ 1.11
CCDC88C-209ENST00000554872 NPC1L1Q9UHC9 1359 aa21.97■■□□□ 1.11
CCDC88C-209ENST00000554872 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.96■■□□□ 1.11
CCDC88C-209ENST00000554872 MORC1Q86VD1 984 aa21.95■■□□□ 1.1
CCDC88C-209ENST00000554872 EYA1Q99502 592 aa21.95■■□□□ 1.1
CCDC88C-209ENST00000554872 EIF4A2Q14240 407 aaKnown RBP21.94■■□□□ 1.1
CCDC88C-209ENST00000554872 IGSF1Q8N6C5 1336 aa21.94■■□□□ 1.1
CCDC88C-209ENST00000554872 TNNT2P45379 298 aaPredicted RBP21.93■■□□□ 1.1
CCDC88C-209ENST00000554872 CASZ1Q86V15 1759 aa21.93■■□□□ 1.1
CCDC88C-209ENST00000554872 ANO8Q9HCE9 1232 aaPredicted RBP21.93■■□□□ 1.1
CCDC88C-209ENST00000554872 LY75O60449 1722 aa21.91■■□□□ 1.1
CCDC88C-209ENST00000554872 CYP27B1O15528 508 aa21.9■■□□□ 1.1
CCDC88C-209ENST00000554872 PRIM1P49642 420 aaKnown RBP21.9■■□□□ 1.1
CCDC88C-209ENST00000554872 NKX1-1Q15270 411 aaPredicted RBP21.9■■□□□ 1.1
CCDC88C-209ENST00000554872 SLC27A3Q5K4L6 730 aa21.9■■□□□ 1.1
CCDC88C-209ENST00000554872 SPG7Q9UQ90 795 aa21.89■■□□□ 1.09
CCDC88C-209ENST00000554872 TOGARAM1Q9Y4F4 1720 aa21.88■■□□□ 1.09
CCDC88C-209ENST00000554872 KDRP35968 1356 aa21.87■■□□□ 1.09
CCDC88C-209ENST00000554872 SLC15A2Q16348 729 aa21.86■■□□□ 1.09
CCDC88C-209ENST00000554872 STK32BQ9NY57 414 aa21.86■■□□□ 1.09
CCDC88C-209ENST00000554872 KAT6BQ8WYB5 2073 aa21.86■■□□□ 1.09
CCDC88C-209ENST00000554872 QSER1Q2KHR3 1735 aa21.85■■□□□ 1.09
CCDC88C-209ENST00000554872 SYTL4Q96C24 671 aaPredicted RBP21.84■■□□□ 1.09
CCDC88C-209ENST00000554872 LRRC4BQ9NT99 713 aa21.84■■□□□ 1.09
CCDC88C-209ENST00000554872 HMGB2P26583 209 aaKnown RBP21.82■■□□□ 1.08
CCDC88C-209ENST00000554872 IL13P35225 146 aa21.82■■□□□ 1.08
CCDC88C-209ENST00000554872 SPON1Q9HCB6 807 aa21.82■■□□□ 1.08
CCDC88C-209ENST00000554872 ITGB4P16144 1822 aa21.82■■□□□ 1.08
CCDC88C-209ENST00000554872 PHKG2P15735 406 aa21.81■■□□□ 1.08
CCDC88C-209ENST00000554872 IFNL2Q8IZJ0 200 aa21.81■■□□□ 1.08
CCDC88C-209ENST00000554872 AKT1S1Q96B36 256 aa21.8■■□□□ 1.08
CCDC88C-209ENST00000554872 MTHFSP49914 203 aa21.79■■□□□ 1.08
CCDC88C-209ENST00000554872 AMOTQ4VCS5 1084 aa21.79■■□□□ 1.08
CCDC88C-209ENST00000554872 ZNF827Q17R98 1081 aa21.78■■□□□ 1.08
CCDC88C-209ENST00000554872 CC2D1BQ5T0F9 858 aaKnown RBP21.77■■□□□ 1.08
CCDC88C-209ENST00000554872 SMARCC1Q92922 1105 aaPredicted RBP21.77■■□□□ 1.08
CCDC88C-209ENST00000554872 COL3A1P02461 1466 aaPredicted RBP21.77■■□□□ 1.07
CCDC88C-209ENST00000554872 PALLDQ8WX93 1383 aa21.76■■□□□ 1.07
CCDC88C-209ENST00000554872 HSP90AB1P08238 724 aaKnown RBP21.76■■□□□ 1.07
CCDC88C-209ENST00000554872 PLEKHO1Q53GL0 409 aaPredicted RBP21.76■■□□□ 1.07
CCDC88C-209ENST00000554872 PDGFDQ9GZP0 370 aaPredicted RBP21.75■■□□□ 1.07
CCDC88C-209ENST00000554872 CCNL1Q9UK58 526 aaPredicted RBP21.75■■□□□ 1.07
CCDC88C-209ENST00000554872 C5P01031 1676 aa21.75■■□□□ 1.07
CCDC88C-209ENST00000554872 MPRIPQ6WCQ1 1025 aa21.74■■□□□ 1.07
CCDC88C-209ENST00000554872 AEBP1Q8IUX7 1158 aa21.74■■□□□ 1.07
CCDC88C-209ENST00000554872 PIGBQ92521 554 aa21.74■■□□□ 1.07
CCDC88C-209ENST00000554872 MTFR1LQ9H019 292 aa21.74■■□□□ 1.07
CCDC88C-209ENST00000554872 COL24A1Q17RW2 1714 aa21.73■■□□□ 1.07
CCDC88C-209ENST00000554872 ERVV-2B6SEH9 535 aa21.73■■□□□ 1.07
CCDC88C-209ENST00000554872 SULT6B1Q6IMI4 303 aa21.73■■□□□ 1.07
CCDC88C-209ENST00000554872 DCAF5Q96JK2 942 aa21.73■■□□□ 1.07
CCDC88C-209ENST00000554872 TUBGCP6Q96RT7 1819 aa21.73■■□□□ 1.07
CCDC88C-209ENST00000554872 TAF1LQ8IZX4 1826 aa21.72■■□□□ 1.07
CCDC88C-209ENST00000554872 PTGER2P43116 358 aa21.72■■□□□ 1.07
CCDC88C-209ENST00000554872 SLC16A10Q8TF71 515 aa21.72■■□□□ 1.07
CCDC88C-209ENST00000554872 ZNF831Q5JPB2 1677 aa21.72■■□□□ 1.07
CCDC88C-209ENST00000554872 KDM6AO15550 1401 aaPredicted RBP21.72■■□□□ 1.07
CCDC88C-209ENST00000554872 SGIP1Q9BQI5 828 aa21.71■■□□□ 1.07
CCDC88C-209ENST00000554872 TMOD3Q9NYL9 352 aa21.71■■□□□ 1.07
CCDC88C-209ENST00000554872 DIAPH1O60610 1272 aaKnown RBP21.7■■□□□ 1.06
CCDC88C-209ENST00000554872 ZNF530Q6P9A1 599 aaPredicted RBP21.7■■□□□ 1.06
CCDC88C-209ENST00000554872 PNPLA7Q6ZV29 1317 aa21.7■■□□□ 1.06
CCDC88C-209ENST00000554872 ZBTB7AO95365 584 aa21.69■■□□□ 1.06
CCDC88C-209ENST00000554872 C4BP0C0L5 1744 aa21.67■■□□□ 1.06
CCDC88C-209ENST00000554872 KCNQ4P56696 695 aa21.67■■□□□ 1.06
CCDC88C-209ENST00000554872 TFCP2L1Q9NZI6 479 aa21.67■■□□□ 1.06
CCDC88C-209ENST00000554872 ADAMTS7Q9UKP4 1686 aa21.66■■□□□ 1.06
CCDC88C-209ENST00000554872 C1orf141Q5JVX7 400 aa21.66■■□□□ 1.06
CCDC88C-209ENST00000554872 PPP1R1BQ9UD71 204 aaPredicted RBP21.66■■□□□ 1.06
CCDC88C-209ENST00000554872 MRC1P22897 1456 aa21.65■■□□□ 1.06
CCDC88C-209ENST00000554872 MAP3K5Q99683 1374 aa21.65■■□□□ 1.06
CCDC88C-209ENST00000554872 LOC102724428A0A0B4J2F2 783 aa21.65■■□□□ 1.06
CCDC88C-209ENST00000554872 SIK1P57059 783 aa21.65■■□□□ 1.06
CCDC88C-209ENST00000554872 SCN11AQ9UI33 1791 aa21.65■■□□□ 1.06
CCDC88C-209ENST00000554872 AKAP4Q5JQC9 854 aa21.64■■□□□ 1.05
CCDC88C-209ENST00000554872 ASAP1Q9ULH1 1129 aa21.64■■□□□ 1.05
CCDC88C-209ENST00000554872 CICQ96RK0 1608 aaPredicted RBP21.64■■□□□ 1.05
CCDC88C-209ENST00000554872 FLAD1Q8NFF5 587 aa21.63■■□□□ 1.05
CCDC88C-209ENST00000554872 ATG3Q9NT62 314 aa21.63■■□□□ 1.05
CCDC88C-209ENST00000554872 ATF5Q9Y2D1 282 aaPredicted RBP21.63■■□□□ 1.05
CCDC88C-209ENST00000554872 UBR3Q6ZT12 1888 aa21.61■■□□□ 1.05
CCDC88C-209ENST00000554872 HMOX1P09601 288 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms