RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 F6X3S4 739 aa11.69□□□□□ -0.54
SYNE2-213ENST00000554805 EIF4A2Q14240 407 aaKnown RBP11.69□□□□□ -0.54
SYNE2-213ENST00000554805 NECTIN2Q92692 538 aa11.69□□□□□ -0.54
SYNE2-213ENST00000554805 DIP2CQ9Y2E4 1556 aa11.68□□□□□ -0.54
SYNE2-213ENST00000554805 REC8O95072 547 aa11.68□□□□□ -0.54
SYNE2-213ENST00000554805 CEP85Q6P2H3 762 aa11.68□□□□□ -0.54
SYNE2-213ENST00000554805 USP26Q9BXU7 913 aa11.68□□□□□ -0.54
SYNE2-213ENST00000554805 NCOA3Q9Y6Q9 1424 aa11.68□□□□□ -0.54
SYNE2-213ENST00000554805 ALKQ9UM73 1620 aa11.68□□□□□ -0.54
SYNE2-213ENST00000554805 TSPYL4Q9UJ04 414 aa11.68□□□□□ -0.54
SYNE2-213ENST00000554805 EDC4Q6P2E9 1401 aaKnown RBP11.68□□□□□ -0.54
SYNE2-213ENST00000554805 PIK3R4Q99570 1358 aa11.68□□□□□ -0.54
SYNE2-213ENST00000554805 PRPF40AO75400 957 aaKnown RBP11.67□□□□□ -0.54
SYNE2-213ENST00000554805 HDGFP51858 240 aaKnown RBP11.67□□□□□ -0.54
SYNE2-213ENST00000554805 HSP90AB2PQ58FF8 381 aa11.67□□□□□ -0.54
SYNE2-213ENST00000554805 TRIM6-TRIM34B2RNG4 842 aa11.66□□□□□ -0.54
SYNE2-213ENST00000554805 TSHZ3Q63HK5 1081 aa11.66□□□□□ -0.54
SYNE2-213ENST00000554805 ZGPATQ8N5A5 531 aaKnown RBP11.66□□□□□ -0.54
SYNE2-213ENST00000554805 RILPL2Q969X0 211 aa11.66□□□□□ -0.54
SYNE2-213ENST00000554805 STK31Q9BXU1 1019 aa11.66□□□□□ -0.54
SYNE2-213ENST00000554805 EXOC6BQ9Y2D4 811 aa11.66□□□□□ -0.54
SYNE2-213ENST00000554805 KLHL40Q2TBA0 621 aa11.66□□□□□ -0.54
SYNE2-213ENST00000554805 TPRNQ4KMQ1 711 aa11.66□□□□□ -0.54
SYNE2-213ENST00000554805 ATP7BP35670 1465 aa11.66□□□□□ -0.54
SYNE2-213ENST00000554805 ERC2O15083 957 aa11.65□□□□□ -0.54
SYNE2-213ENST00000554805 NEK4P51957 841 aa11.65□□□□□ -0.54
SYNE2-213ENST00000554805 PKP1Q13835 747 aa11.65□□□□□ -0.54
SYNE2-213ENST00000554805 UBE2Q2Q8WVN8 375 aa11.65□□□□□ -0.54
SYNE2-213ENST00000554805 CHL1O00533 1208 aa11.65□□□□□ -0.54
SYNE2-213ENST00000554805 FOXO3O43524 673 aa11.65□□□□□ -0.54
SYNE2-213ENST00000554805 MSH6P52701 1360 aa11.65□□□□□ -0.54
SYNE2-213ENST00000554805 METP08581 1390 aa11.65□□□□□ -0.55
SYNE2-213ENST00000554805 MSNP26038 577 aaKnown RBP11.65□□□□□ -0.55
SYNE2-213ENST00000554805 CCDC173Q0VFZ6 552 aa11.65□□□□□ -0.55
SYNE2-213ENST00000554805 FOXD4L6Q3SYB3 417 aaPredicted RBP11.65□□□□□ -0.55
SYNE2-213ENST00000554805 FOXD4L3Q6VB84 417 aaPredicted RBP11.65□□□□□ -0.55
SYNE2-213ENST00000554805 G2E3Q7L622 706 aa11.65□□□□□ -0.55
SYNE2-213ENST00000554805 ERBB4Q15303 1308 aa11.64□□□□□ -0.55
SYNE2-213ENST00000554805 AMPHP49418 695 aa11.64□□□□□ -0.55
SYNE2-213ENST00000554805 FKBP5Q13451 457 aaPredicted RBP11.63□□□□□ -0.55
SYNE2-213ENST00000554805 CWC22Q9HCG8 908 aaKnown RBP11.63□□□□□ -0.55
SYNE2-213ENST00000554805 RBM27Q9P2N5 1060 aaKnown RBP11.63□□□□□ -0.55
SYNE2-213ENST00000554805 TTC21BQ7Z4L5 1316 aa11.63□□□□□ -0.55
SYNE2-213ENST00000554805 TMEM131LA2VDJ0 1609 aa11.63□□□□□ -0.55
SYNE2-213ENST00000554805 MYO5BQ9ULV0 1848 aa11.63□□□□□ -0.55
SYNE2-213ENST00000554805 AATKQ6ZMQ8 1374 aa11.63□□□□□ -0.55
SYNE2-213ENST00000554805 MCCP23508 829 aa11.63□□□□□ -0.55
SYNE2-213ENST00000554805 CHAMP1Q96JM3 812 aa11.63□□□□□ -0.55
SYNE2-213ENST00000554805 ANO2Q9NQ90 1003 aa11.63□□□□□ -0.55
SYNE2-213ENST00000554805 PTPRCP08575 1304 aa11.63□□□□□ -0.55
SYNE2-213ENST00000554805 ACEP12821 1306 aa11.63□□□□□ -0.55
SYNE2-213ENST00000554805 RTL1A6NKG5 1358 aa11.63□□□□□ -0.55
SYNE2-213ENST00000554805 CDK12Q9NYV4 1490 aaPredicted RBP11.62□□□□□ -0.55
SYNE2-213ENST00000554805 GNAI2P04899 355 aa11.62□□□□□ -0.55
SYNE2-213ENST00000554805 C14orf37Q86TY3 774 aa11.62□□□□□ -0.55
SYNE2-213ENST00000554805 NGDNQ8NEJ9 315 aaKnown RBP11.62□□□□□ -0.55
SYNE2-213ENST00000554805 LTV1Q96GA3 475 aaPredicted RBP11.62□□□□□ -0.55
SYNE2-213ENST00000554805 CCT4P50991 539 aaKnown RBP11.62□□□□□ -0.55
SYNE2-213ENST00000554805 PDE1AP54750 535 aa11.62□□□□□ -0.55
SYNE2-213ENST00000554805 HSP90AA2PQ14568 343 aaPredicted RBP11.62□□□□□ -0.55
SYNE2-213ENST00000554805 PRR36Q9H6K5 1346 aa11.62□□□□□ -0.55
SYNE2-213ENST00000554805 KIF24Q5T7B8 1368 aa11.62□□□□□ -0.55
SYNE2-213ENST00000554805 CPSF1Q10570 1443 aaKnown RBP11.61□□□□□ -0.55
SYNE2-213ENST00000554805 ZBTB7CA1YPR0 619 aa11.61□□□□□ -0.55
SYNE2-213ENST00000554805 ZSCAN23Q3MJ62 389 aa11.61□□□□□ -0.55
SYNE2-213ENST00000554805 MTHFSDQ2M296 383 aaKnown RBP11.61□□□□□ -0.55
SYNE2-213ENST00000554805 LMBRD1Q9NUN5 540 aa11.61□□□□□ -0.55
SYNE2-213ENST00000554805 REREQ9P2R6 1566 aa11.6□□□□□ -0.55
SYNE2-213ENST00000554805 PREX1Q8TCU6 1659 aa11.6□□□□□ -0.55
SYNE2-213ENST00000554805 MAP2P11137 1827 aaKnown RBP11.6□□□□□ -0.55
SYNE2-213ENST00000554805 A2ML1A8K2U0 1454 aa11.6□□□□□ -0.55
SYNE2-213ENST00000554805 NUTM2GQ5VZR2 741 aa11.6□□□□□ -0.55
SYNE2-213ENST00000554805 LRRCC1Q9C099 1032 aa11.6□□□□□ -0.55
SYNE2-213ENST00000554805 CPS1P31327 1500 aa11.6□□□□□ -0.55
SYNE2-213ENST00000554805 GLIPR1L2Q4G1C9 344 aa11.59□□□□□ -0.55
SYNE2-213ENST00000554805 RNF214Q8ND24 703 aa11.59□□□□□ -0.55
SYNE2-213ENST00000554805 KIF20BQ96Q89 1820 aa11.59□□□□□ -0.55
SYNE2-213ENST00000554805 ANKRD26Q9UPS8 1709 aa11.59□□□□□ -0.55
SYNE2-213ENST00000554805 ZSCAN30Q86W11 494 aa11.59□□□□□ -0.55
SYNE2-213ENST00000554805 PRIM1P49642 420 aaKnown RBP11.59□□□□□ -0.55
SYNE2-213ENST00000554805 PPP6R1Q9UPN7 881 aa11.59□□□□□ -0.55
SYNE2-213ENST00000554805 CDC42BPGQ6DT37 1551 aa11.58□□□□□ -0.56
SYNE2-213ENST00000554805 SYCE3A1L190 88 aa11.58□□□□□ -0.56
SYNE2-213ENST00000554805 TMX3Q96JJ7 454 aa11.58□□□□□ -0.56
SYNE2-213ENST00000554805 UPF3BQ9BZI7 483 aaKnown RBP11.58□□□□□ -0.56
SYNE2-213ENST00000554805 RBSNQ9H1K0 784 aa11.58□□□□□ -0.56
SYNE2-213ENST00000554805 IL1RAPL2Q9NP60 686 aa11.58□□□□□ -0.56
SYNE2-213ENST00000554805 DIP2BQ9P265 1576 aa11.58□□□□□ -0.56
SYNE2-213ENST00000554805 PTMAP06454 111 aaKnown RBP11.58□□□□□ -0.56
SYNE2-213ENST00000554805 GNAI3P08754 354 aa11.58□□□□□ -0.56
SYNE2-213ENST00000554805 MX1P20591 662 aa11.58□□□□□ -0.56
SYNE2-213ENST00000554805 ATP10DQ9P241 1426 aa11.58□□□□□ -0.56
SYNE2-213ENST00000554805 MAP3K19Q56UN5 1328 aa11.58□□□□□ -0.56
SYNE2-213ENST00000554805 MAP4K4O95819 1239 aaPredicted RBP11.57□□□□□ -0.56
SYNE2-213ENST00000554805 FLIIQ13045 1269 aa11.57□□□□□ -0.56
SYNE2-213ENST00000554805 CCDC30Q5VVM6 783 aa11.57□□□□□ -0.56
SYNE2-213ENST00000554805 KIAA0232Q92628 1395 aa11.57□□□□□ -0.56
SYNE2-213ENST00000554805 CLEC17AQ6ZS10 378 aa11.57□□□□□ -0.56
SYNE2-213ENST00000554805 KIAA1211Q6ZU35 1233 aa11.57□□□□□ -0.56
SYNE2-213ENST00000554805 ESYT1Q9BSJ8 1104 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 450 ms