RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 CARD11Q9BXL7 1154 aa16.03■□□□□ 0.16
VPS33B-204ENST00000554660 NSD2O96028 1365 aa16.02■□□□□ 0.16
VPS33B-204ENST00000554660 SLC27A3Q5K4L6 730 aa16.02■□□□□ 0.16
VPS33B-204ENST00000554660 LY75O60449 1722 aa16.02■□□□□ 0.15
VPS33B-204ENST00000554660 ANKRD36BQ8N2N9 1353 aa16.01■□□□□ 0.15
VPS33B-204ENST00000554660 KAT6BQ8WYB5 2073 aa16.01■□□□□ 0.15
VPS33B-204ENST00000554660 MEGF6O75095 1541 aa16.01■□□□□ 0.15
VPS33B-204ENST00000554660 POLD1P28340 1107 aa16.01■□□□□ 0.15
VPS33B-204ENST00000554660 NLGN2Q8NFZ4 835 aa16.01■□□□□ 0.15
VPS33B-204ENST00000554660 RGPD2P0DJD1 1756 aa16■□□□□ 0.15
VPS33B-204ENST00000554660 SLC16A10Q8TF71 515 aa16■□□□□ 0.15
VPS33B-204ENST00000554660 IP6K1Q92551 441 aa16■□□□□ 0.15
VPS33B-204ENST00000554660 TERF2IPQ9NYB0 399 aa16■□□□□ 0.15
VPS33B-204ENST00000554660 TFCP2L1Q9NZI6 479 aa16■□□□□ 0.15
VPS33B-204ENST00000554660 PRIM1P49642 420 aaKnown RBP15.99■□□□□ 0.15
VPS33B-204ENST00000554660 MAP3K19Q56UN5 1328 aa15.98■□□□□ 0.15
VPS33B-204ENST00000554660 GIGYF1O75420 1035 aaPredicted RBP15.97■□□□□ 0.15
VPS33B-204ENST00000554660 FBLN1P23142 703 aa15.97■□□□□ 0.15
VPS33B-204ENST00000554660 HOXC9P31274 260 aa15.96■□□□□ 0.15
VPS33B-204ENST00000554660 CCNL1Q9UK58 526 aaPredicted RBP15.96■□□□□ 0.15
VPS33B-204ENST00000554660 YBX3P16989 372 aaKnown RBP eCLIP15.95■□□□□ 0.14
VPS33B-204ENST00000554660 MSH5O43196 834 aa15.94■□□□□ 0.14
VPS33B-204ENST00000554660 AMPHP49418 695 aa15.94■□□□□ 0.14
VPS33B-204ENST00000554660 MSL1Q68DK7 614 aa15.94■□□□□ 0.14
VPS33B-204ENST00000554660 ZCRB1Q8TBF4 217 aaKnown RBP15.94■□□□□ 0.14
VPS33B-204ENST00000554660 COG3Q96JB2 828 aa15.94■□□□□ 0.14
VPS33B-204ENST00000554660 C5P01031 1676 aa15.94■□□□□ 0.14
VPS33B-204ENST00000554660 USP47Q96K76 1375 aa15.93■□□□□ 0.14
VPS33B-204ENST00000554660 USHBP1Q8N6Y0 703 aa15.93■□□□□ 0.14
VPS33B-204ENST00000554660 RTL1A6NKG5 1358 aa15.92■□□□□ 0.14
VPS33B-204ENST00000554660 COL23A1Q86Y22 540 aaPredicted RBP15.92■□□□□ 0.14
VPS33B-204ENST00000554660 CEP350Q5VT06 3117 aa15.92■□□□□ 0.14
VPS33B-204ENST00000554660 TONSLQ96HA7 1378 aa15.91■□□□□ 0.14
VPS33B-204ENST00000554660 RRS1Q15050 365 aaKnown RBP15.91■□□□□ 0.14
VPS33B-204ENST00000554660 TESK2Q96S53 571 aa15.91■□□□□ 0.14
VPS33B-204ENST00000554660 NBPF6Q5VWK0 638 aa15.9■□□□□ 0.14
VPS33B-204ENST00000554660 NBPF4Q96M43 638 aa15.9■□□□□ 0.14
VPS33B-204ENST00000554660 PUS7Q96PZ0 661 aaKnown RBP15.9■□□□□ 0.14
VPS33B-204ENST00000554660 SMG6Q86US8 1419 aaKnown RBP15.89■□□□□ 0.13
VPS33B-204ENST00000554660 ATP10DQ9P241 1426 aa15.89■□□□□ 0.13
VPS33B-204ENST00000554660 TIMELESSQ9UNS1 1208 aa15.89■□□□□ 0.13
VPS33B-204ENST00000554660 TOGARAM1Q9Y4F4 1720 aa15.88■□□□□ 0.13
VPS33B-204ENST00000554660 ST20-MTHFSA0A0A6YYL1 179 aa15.88■□□□□ 0.13
VPS33B-204ENST00000554660 PALLDQ8WX93 1383 aa15.87■□□□□ 0.13
VPS33B-204ENST00000554660 TAF1LQ8IZX4 1826 aa15.87■□□□□ 0.13
VPS33B-204ENST00000554660 GRIN3BO60391 1043 aa15.87■□□□□ 0.13
VPS33B-204ENST00000554660 RAPGEF4Q8WZA2 1011 aa15.87■□□□□ 0.13
VPS33B-204ENST00000554660 GGNBP2Q9H3C7 697 aa15.87■□□□□ 0.13
VPS33B-204ENST00000554660 C4BP0C0L5 1744 aa15.86■□□□□ 0.13
VPS33B-204ENST00000554660 KIF20BQ96Q89 1820 aa15.85■□□□□ 0.13
VPS33B-204ENST00000554660 CGNL1Q0VF96 1302 aa15.85■□□□□ 0.13
VPS33B-204ENST00000554660 PCDH11XQ9BZA7 1347 aa15.85■□□□□ 0.13
VPS33B-204ENST00000554660 PCDH11YQ9BZA8 1340 aa15.85■□□□□ 0.13
VPS33B-204ENST00000554660 TATP17735 454 aaPredicted RBP15.84■□□□□ 0.13
VPS33B-204ENST00000554660 AMIGO3Q86WK7 504 aa15.84■□□□□ 0.13
VPS33B-204ENST00000554660 WWC3Q9ULE0 1092 aa15.84■□□□□ 0.13
VPS33B-204ENST00000554660 ADCY9O60503 1353 aa15.84■□□□□ 0.13
VPS33B-204ENST00000554660 PKD1L3Q7Z443 1732 aa15.83■□□□□ 0.13
VPS33B-204ENST00000554660 FYB1O15117 783 aa15.83■□□□□ 0.12
VPS33B-204ENST00000554660 HSP90AB2PQ58FF8 381 aa15.83■□□□□ 0.12
VPS33B-204ENST00000554660 MPRIPQ6WCQ1 1025 aa15.83■□□□□ 0.12
VPS33B-204ENST00000554660 INSRP06213 1382 aa15.83■□□□□ 0.12
VPS33B-204ENST00000554660 SMIM5Q71RC9 77 aa15.82■□□□□ 0.12
VPS33B-204ENST00000554660 ZNF526Q8TF50 670 aaPredicted RBP15.82■□□□□ 0.12
VPS33B-204ENST00000554660 CD2APQ9Y5K6 639 aa15.82■□□□□ 0.12
VPS33B-204ENST00000554660 FLT4P35916 1363 aa15.82■□□□□ 0.12
VPS33B-204ENST00000554660 ITGB4P16144 1822 aa15.82■□□□□ 0.12
VPS33B-204ENST00000554660 CYP27B1O15528 508 aa15.81■□□□□ 0.12
VPS33B-204ENST00000554660 PHF14O94880 888 aa15.81■□□□□ 0.12
VPS33B-204ENST00000554660 UBR3Q6ZT12 1888 aa15.81■□□□□ 0.12
VPS33B-204ENST00000554660 IFFO2Q5TF58 517 aa15.8■□□□□ 0.12
VPS33B-204ENST00000554660 MIER1Q8N108 512 aa15.8■□□□□ 0.12
VPS33B-204ENST00000554660 AK7Q96M32 723 aa15.8■□□□□ 0.12
VPS33B-204ENST00000554660 GPBP1L1Q9HC44 474 aaPredicted RBP15.8■□□□□ 0.12
VPS33B-204ENST00000554660 FLAD1Q8NFF5 587 aa15.79■□□□□ 0.12
VPS33B-204ENST00000554660 GTF3C3Q9Y5Q9 886 aa15.79■□□□□ 0.12
VPS33B-204ENST00000554660 IGSF1Q8N6C5 1336 aa15.78■□□□□ 0.12
VPS33B-204ENST00000554660 MAP2P11137 1827 aaKnown RBP15.78■□□□□ 0.12
VPS33B-204ENST00000554660 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.77■□□□□ 0.12
VPS33B-204ENST00000554660 EMILIN1Q9Y6C2 1016 aa15.77■□□□□ 0.12
VPS33B-204ENST00000554660 ANKRD26Q9UPS8 1709 aa15.77■□□□□ 0.11
VPS33B-204ENST00000554660 NSD3Q9BZ95 1437 aa15.77■□□□□ 0.11
VPS33B-204ENST00000554660 KIF24Q5T7B8 1368 aa15.76■□□□□ 0.11
VPS33B-204ENST00000554660 TMF1P82094 1093 aa15.76■□□□□ 0.11
VPS33B-204ENST00000554660 PIGBQ92521 554 aa15.76■□□□□ 0.11
VPS33B-204ENST00000554660 SMARCC1Q92922 1105 aaPredicted RBP15.76■□□□□ 0.11
VPS33B-204ENST00000554660 NCAPD2Q15021 1401 aa15.76■□□□□ 0.11
VPS33B-204ENST00000554660 SLC24A1O60721 1099 aa15.75■□□□□ 0.11
VPS33B-204ENST00000554660 LINC00116Q8NCU8 138 aa15.75■□□□□ 0.11
VPS33B-204ENST00000554660 CICQ96RK0 1608 aaPredicted RBP15.74■□□□□ 0.11
VPS33B-204ENST00000554660 LOC102724428A0A0B4J2F2 783 aa15.73■□□□□ 0.11
VPS33B-204ENST00000554660 PPM1GO15355 546 aaPredicted RBP15.73■□□□□ 0.11
VPS33B-204ENST00000554660 HSPA6P17066 643 aa15.73■□□□□ 0.11
VPS33B-204ENST00000554660 SSFA2P28290 1259 aa15.73■□□□□ 0.11
VPS33B-204ENST00000554660 SIK1P57059 783 aa15.73■□□□□ 0.11
VPS33B-204ENST00000554660 GNPATO15228 680 aa15.72■□□□□ 0.11
VPS33B-204ENST00000554660 HMGB2P26583 209 aaKnown RBP15.72■□□□□ 0.11
VPS33B-204ENST00000554660 ITPK1Q13572 414 aa15.72■□□□□ 0.11
VPS33B-204ENST00000554660 CARD14Q9BXL6 1004 aa15.72■□□□□ 0.11
VPS33B-204ENST00000554660 KIAA1551Q9HCM1 1747 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms