RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 KAT6BQ8WYB5 2073 aa15.82■□□□□ 0.12
CCDC88C-208ENST00000554165 PSDA5PKW4 1024 aaPredicted RBP15.81■□□□□ 0.12
CCDC88C-208ENST00000554165 RAPGEF4Q8WZA2 1011 aa15.81■□□□□ 0.12
CCDC88C-208ENST00000554165 TATP17735 454 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-208ENST00000554165 SHANK3Q9BYB0 1731 aa15.8■□□□□ 0.12
CCDC88C-208ENST00000554165 PROM2Q8N271 834 aa15.79■□□□□ 0.12
CCDC88C-208ENST00000554165 NCAPD2Q15021 1401 aa15.78■□□□□ 0.12
CCDC88C-208ENST00000554165 MTHFSP49914 203 aa15.78■□□□□ 0.12
CCDC88C-208ENST00000554165 CYP27B1O15528 508 aa15.77■□□□□ 0.12
CCDC88C-208ENST00000554165 PRIM1P49642 420 aaKnown RBP15.77■□□□□ 0.12
CCDC88C-208ENST00000554165 R3HDM1Q15032 1099 aaKnown RBP15.77■□□□□ 0.12
CCDC88C-208ENST00000554165 PLSCR1O15162 318 aa15.76■□□□□ 0.11
CCDC88C-208ENST00000554165 AEBP1Q8IUX7 1158 aa15.76■□□□□ 0.11
CCDC88C-208ENST00000554165 IGSF1Q8N6C5 1336 aa15.75■□□□□ 0.11
CCDC88C-208ENST00000554165 NPC1L1Q9UHC9 1359 aa15.75■□□□□ 0.11
CCDC88C-208ENST00000554165 NHSQ6T4R5 1651 aa15.74■□□□□ 0.11
CCDC88C-208ENST00000554165 IL13P35225 146 aa15.74■□□□□ 0.11
CCDC88C-208ENST00000554165 SYTL4Q96C24 671 aaPredicted RBP15.74■□□□□ 0.11
CCDC88C-208ENST00000554165 SRCAPQ6ZRS2 3230 aa15.74■□□□□ 0.11
CCDC88C-208ENST00000554165 NUP188Q5SRE5 1749 aa15.74■□□□□ 0.11
CCDC88C-208ENST00000554165 PARD3Q8TEW0 1356 aa15.74■□□□□ 0.11
CCDC88C-208ENST00000554165 RREB1Q92766 1687 aa15.73■□□□□ 0.11
CCDC88C-208ENST00000554165 ANO8Q9HCE9 1232 aaPredicted RBP15.73■□□□□ 0.11
CCDC88C-208ENST00000554165 BTAF1O14981 1849 aa15.73■□□□□ 0.11
CCDC88C-208ENST00000554165 TXNRD1Q16881 649 aa15.72■□□□□ 0.11
CCDC88C-208ENST00000554165 DOT1LQ8TEK3 1739 aa15.71■□□□□ 0.11
CCDC88C-208ENST00000554165 PCDH11XQ9BZA7 1347 aa15.71■□□□□ 0.11
CCDC88C-208ENST00000554165 PCDH11YQ9BZA8 1340 aa15.71■□□□□ 0.11
CCDC88C-208ENST00000554165 KCNQ4P56696 695 aa15.71■□□□□ 0.11
CCDC88C-208ENST00000554165 SULT6B1Q6IMI4 303 aa15.71■□□□□ 0.11
CCDC88C-208ENST00000554165 PKD1L3Q7Z443 1732 aa15.71■□□□□ 0.1
CCDC88C-208ENST00000554165 SPG7Q9UQ90 795 aa15.7■□□□□ 0.1
CCDC88C-208ENST00000554165 LRRC4BQ9NT99 713 aa15.69■□□□□ 0.1
CCDC88C-208ENST00000554165 HMOX1P09601 288 aa15.68■□□□□ 0.1
CCDC88C-208ENST00000554165 DDX10Q13206 875 aaKnown RBP15.68■□□□□ 0.1
CCDC88C-208ENST00000554165 PDGFDQ9GZP0 370 aaPredicted RBP15.68■□□□□ 0.1
CCDC88C-208ENST00000554165 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.68■□□□□ 0.1
CCDC88C-208ENST00000554165 RGPD3A6NKT7 1758 aaPredicted RBP15.67■□□□□ 0.1
CCDC88C-208ENST00000554165 RGPD4Q7Z3J3 1758 aa15.67■□□□□ 0.1
CCDC88C-208ENST00000554165 PHKG2P15735 406 aa15.67■□□□□ 0.1
CCDC88C-208ENST00000554165 PPP2R1AP30153 589 aa15.67■□□□□ 0.1
CCDC88C-208ENST00000554165 NKX1-1Q15270 411 aaPredicted RBP15.67■□□□□ 0.1
CCDC88C-208ENST00000554165 NBPF14Q5TI25 921 aa15.67■□□□□ 0.1
CCDC88C-208ENST00000554165 MPRIPQ6WCQ1 1025 aa15.67■□□□□ 0.1
CCDC88C-208ENST00000554165 TOGARAM1Q9Y4F4 1720 aa15.67■□□□□ 0.1
CCDC88C-208ENST00000554165 COL3A1P02461 1466 aaPredicted RBP15.66■□□□□ 0.1
CCDC88C-208ENST00000554165 DIAPH1O60610 1272 aaKnown RBP15.66■□□□□ 0.1
CCDC88C-208ENST00000554165 KDRP35968 1356 aa15.65■□□□□ 0.1
CCDC88C-208ENST00000554165 PLEKHO1Q53GL0 409 aaPredicted RBP15.65■□□□□ 0.1
CCDC88C-208ENST00000554165 ZNF530Q6P9A1 599 aaPredicted RBP15.65■□□□□ 0.1
CCDC88C-208ENST00000554165 IFNL2Q8IZJ0 200 aa15.65■□□□□ 0.1
CCDC88C-208ENST00000554165 PIGBQ92521 554 aa15.65■□□□□ 0.1
CCDC88C-208ENST00000554165 U2SURPO15042 1029 aaKnown RBP15.63■□□□□ 0.09
CCDC88C-208ENST00000554165 ZNF827Q17R98 1081 aa15.63■□□□□ 0.09
CCDC88C-208ENST00000554165 ITGB4P16144 1822 aa15.62■□□□□ 0.09
CCDC88C-208ENST00000554165 ZEB1P37275 1124 aaPredicted RBP15.61■□□□□ 0.09
CCDC88C-208ENST00000554165 SLC15A2Q16348 729 aa15.61■□□□□ 0.09
CCDC88C-208ENST00000554165 STK32BQ9NY57 414 aa15.61■□□□□ 0.09
CCDC88C-208ENST00000554165 ASAP1Q9ULH1 1129 aa15.61■□□□□ 0.09
CCDC88C-208ENST00000554165 KDM6AO15550 1401 aaPredicted RBP15.6■□□□□ 0.09
CCDC88C-208ENST00000554165 AMOTQ4VCS5 1084 aa15.6■□□□□ 0.09
CCDC88C-208ENST00000554165 CCNL1Q9UK58 526 aaPredicted RBP15.6■□□□□ 0.09
CCDC88C-208ENST00000554165 PAPPAQ13219 1627 aa15.6■□□□□ 0.09
CCDC88C-208ENST00000554165 PALLDQ8WX93 1383 aa15.6■□□□□ 0.09
CCDC88C-208ENST00000554165 MTHFSDQ2M296 383 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-208ENST00000554165 SLC27A3Q5K4L6 730 aa15.59■□□□□ 0.09
CCDC88C-208ENST00000554165 AKT1S1Q96B36 256 aa15.59■□□□□ 0.09
CCDC88C-208ENST00000554165 TMOD3Q9NYL9 352 aa15.59■□□□□ 0.09
CCDC88C-208ENST00000554165 LY75O60449 1722 aa15.58■□□□□ 0.08
CCDC88C-208ENST00000554165 C1orf141Q5JVX7 400 aa15.58■□□□□ 0.08
CCDC88C-208ENST00000554165 DCAF5Q96JK2 942 aa15.58■□□□□ 0.08
CCDC88C-208ENST00000554165 CFAP53Q96M91 514 aa15.58■□□□□ 0.08
CCDC88C-208ENST00000554165 ZBTB7AO95365 584 aa15.57■□□□□ 0.08
CCDC88C-208ENST00000554165 LGR6Q9HBX8 967 aa15.57■□□□□ 0.08
CCDC88C-208ENST00000554165 ATG3Q9NT62 314 aa15.57■□□□□ 0.08
CCDC88C-208ENST00000554165 PLEKHG2Q9H7P9 1386 aa15.57■□□□□ 0.08
CCDC88C-208ENST00000554165 SMIM5Q71RC9 77 aa15.56■□□□□ 0.08
CCDC88C-208ENST00000554165 PHACTR3Q96KR7 559 aa15.56■□□□□ 0.08
CCDC88C-208ENST00000554165 CASZ1Q86V15 1759 aa15.55■□□□□ 0.08
CCDC88C-208ENST00000554165 ERVV-2B6SEH9 535 aa15.55■□□□□ 0.08
CCDC88C-208ENST00000554165 HSP90AB1P08238 724 aaKnown RBP15.55■□□□□ 0.08
CCDC88C-208ENST00000554165 U2AF1L5P0DN76 240 aaPredicted RBP15.55■□□□□ 0.08
CCDC88C-208ENST00000554165 CABP4P57796 275 aa15.55■□□□□ 0.08
CCDC88C-208ENST00000554165 U2AF1Q01081 240 aaKnown RBP eCLIP15.55■□□□□ 0.08
CCDC88C-208ENST00000554165 AKAP4Q5JQC9 854 aa15.55■□□□□ 0.08
CCDC88C-208ENST00000554165 RSPH6AQ9H0K4 717 aa15.55■□□□□ 0.08
CCDC88C-208ENST00000554165 ATF5Q9Y2D1 282 aaPredicted RBP15.55■□□□□ 0.08
CCDC88C-208ENST00000554165 LRP5O75197 1615 aa15.54■□□□□ 0.08
CCDC88C-208ENST00000554165 PRKAR2BP31323 418 aa15.54■□□□□ 0.08
CCDC88C-208ENST00000554165 NFATC2IPQ8NCF5 419 aa15.54■□□□□ 0.08
CCDC88C-208ENST00000554165 SMARCC1Q92922 1105 aaPredicted RBP15.54■□□□□ 0.08
CCDC88C-208ENST00000554165 PNPLA7Q6ZV29 1317 aa15.53■□□□□ 0.08
CCDC88C-208ENST00000554165 LOC102724428A0A0B4J2F2 783 aa15.53■□□□□ 0.08
CCDC88C-208ENST00000554165 RNMTO43148 476 aaKnown RBP15.53■□□□□ 0.08
CCDC88C-208ENST00000554165 SIK1P57059 783 aa15.53■□□□□ 0.08
CCDC88C-208ENST00000554165 ITPK1Q13572 414 aa15.53■□□□□ 0.08
CCDC88C-208ENST00000554165 AMIGO3Q86WK7 504 aa15.53■□□□□ 0.08
CCDC88C-208ENST00000554165 SLC4A9Q96Q91 983 aa15.53■□□□□ 0.08
CCDC88C-208ENST00000554165 TFCP2L1Q9NZI6 479 aa15.53■□□□□ 0.08
CCDC88C-208ENST00000554165 LINC00116Q8NCU8 138 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms