RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 TMED8Q6PL24 325 aaPredicted RBP11.48□□□□□ -0.57
SIX4-202ENST00000554079 HOMEZQ8IX15 550 aa11.48□□□□□ -0.57
SIX4-202ENST00000554079 DONSONQ9NYP3 566 aa11.48□□□□□ -0.57
SIX4-202ENST00000554079 GOLGA6L6A8MZA4 724 aa11.47□□□□□ -0.57
SIX4-202ENST00000554079 TNNT1P13805 278 aa11.47□□□□□ -0.57
SIX4-202ENST00000554079 HCLS1P14317 486 aaPredicted RBP11.47□□□□□ -0.57
SIX4-202ENST00000554079 SRPK2P78362 688 aaKnown RBP11.47□□□□□ -0.57
SIX4-202ENST00000554079 DZIP1LQ8IYY4 767 aaKnown RBP11.47□□□□□ -0.57
SIX4-202ENST00000554079 C16orf45Q96MC5 204 aaPredicted RBP11.47□□□□□ -0.57
SIX4-202ENST00000554079 CEP152O94986 1710 aa11.47□□□□□ -0.57
SIX4-202ENST00000554079 KRBA2Q6ZNG9 492 aa11.47□□□□□ -0.57
SIX4-202ENST00000554079 LNPKQ9C0E8 428 aa11.47□□□□□ -0.57
SIX4-202ENST00000554079 JRKLQ9Y4A0 524 aa11.47□□□□□ -0.57
SIX4-202ENST00000554079 PRG4Q92954 1404 aaPredicted RBP11.46□□□□□ -0.57
SIX4-202ENST00000554079 BMS1Q14692 1282 aaKnown RBP11.46□□□□□ -0.57
SIX4-202ENST00000554079 SRLQ86TD4 932 aa11.46□□□□□ -0.57
SIX4-202ENST00000554079 CHD1LQ86WJ1 897 aa11.46□□□□□ -0.57
SIX4-202ENST00000554079 TOMM22Q9NS69 142 aa11.46□□□□□ -0.57
SIX4-202ENST00000554079 FHOD1Q9Y613 1164 aa11.46□□□□□ -0.57
SIX4-202ENST00000554079 PLEKHG2Q9H7P9 1386 aa11.45□□□□□ -0.58
SIX4-202ENST00000554079 BRD1O95696 1058 aa11.45□□□□□ -0.58
SIX4-202ENST00000554079 PTPRGP23470 1445 aa11.45□□□□□ -0.58
SIX4-202ENST00000554079 PLA2G4AP47712 749 aa11.45□□□□□ -0.58
SIX4-202ENST00000554079 ZKSCAN2Q63HK3 967 aa11.45□□□□□ -0.58
SIX4-202ENST00000554079 FUCA2Q9BTY2 467 aa11.45□□□□□ -0.58
SIX4-202ENST00000554079 USP26Q9BXU7 913 aa11.45□□□□□ -0.58
SIX4-202ENST00000554079 ZNF215Q9UL58 517 aaPredicted RBP11.45□□□□□ -0.58
SIX4-202ENST00000554079 GADD45BO75293 160 aaPredicted RBP11.45□□□□□ -0.58
SIX4-202ENST00000554079 H2AFXP16104 143 aaPredicted RBP11.45□□□□□ -0.58
SIX4-202ENST00000554079 ATP2B1P20020 1258 aa11.45□□□□□ -0.58
SIX4-202ENST00000554079 TMF1P82094 1093 aa11.45□□□□□ -0.58
SIX4-202ENST00000554079 ELF2Q15723 593 aa11.45□□□□□ -0.58
SIX4-202ENST00000554079 GPATCH11Q8N954 259 aa11.45□□□□□ -0.58
SIX4-202ENST00000554079 GTF3C6Q969F1 213 aa11.45□□□□□ -0.58
SIX4-202ENST00000554079 KNSTRNQ9Y448 316 aa11.45□□□□□ -0.58
SIX4-202ENST00000554079 PTGS1P23219 599 aa11.44□□□□□ -0.58
SIX4-202ENST00000554079 CCDC183Q5T5S1 534 aa11.44□□□□□ -0.58
SIX4-202ENST00000554079 ERO1AQ96HE7 468 aa11.44□□□□□ -0.58
SIX4-202ENST00000554079 DRC1Q96MC2 740 aa11.44□□□□□ -0.58
SIX4-202ENST00000554079 A0A1B0GUL7 405 aa11.43□□□□□ -0.58
SIX4-202ENST00000554079 CDC45O75419 566 aa11.43□□□□□ -0.58
SIX4-202ENST00000554079 TRHP20396 242 aaPredicted RBP11.43□□□□□ -0.58
SIX4-202ENST00000554079 GSCP56915 257 aaPredicted RBP11.43□□□□□ -0.58
SIX4-202ENST00000554079 PACS2Q86VP3 889 aa11.43□□□□□ -0.58
SIX4-202ENST00000554079 SPC24Q8NBT2 197 aa11.43□□□□□ -0.58
SIX4-202ENST00000554079 CCDC191Q8NCU4 936 aa11.43□□□□□ -0.58
SIX4-202ENST00000554079 RTF1Q92541 710 aaKnown RBP11.43□□□□□ -0.58
SIX4-202ENST00000554079 DDX19BQ9UMR2 479 aa11.43□□□□□ -0.58
SIX4-202ENST00000554079 RRP15Q9Y3B9 282 aaKnown RBP11.43□□□□□ -0.58
SIX4-202ENST00000554079 SMARCA5O60264 1052 aaPredicted RBP11.43□□□□□ -0.58
SIX4-202ENST00000554079 NBPF20Q3BBV1 942 aa11.43□□□□□ -0.58
SIX4-202ENST00000554079 CXorf56Q9H5V9 222 aa11.43□□□□□ -0.58
SIX4-202ENST00000554079 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.43□□□□□ -0.58
SIX4-202ENST00000554079 LRRFIP2Q9Y608 721 aaKnown RBP11.43□□□□□ -0.58
SIX4-202ENST00000554079 V9GYY5 206 aaPredicted RBP11.43□□□□□ -0.58
SIX4-202ENST00000554079 A2MP01023 1474 aa11.42□□□□□ -0.58
SIX4-202ENST00000554079 KIF1CO43896 1103 aaKnown RBP11.42□□□□□ -0.58
SIX4-202ENST00000554079 ZSCAN26Q16670 478 aa11.42□□□□□ -0.58
SIX4-202ENST00000554079 TEX35Q5T0J7 233 aa11.42□□□□□ -0.58
SIX4-202ENST00000554079 FOXD4L5Q5VV16 416 aaPredicted RBP11.42□□□□□ -0.58
SIX4-202ENST00000554079 FOXD4L4Q8WXT5 416 aaPredicted RBP11.42□□□□□ -0.58
SIX4-202ENST00000554079 ERCC6L2Q5T890 1561 aa11.42□□□□□ -0.58
SIX4-202ENST00000554079 PNMA6AP0CW24 399 aaPredicted RBP11.42□□□□□ -0.58
SIX4-202ENST00000554079 SART3Q15020 963 aaKnown RBP11.42□□□□□ -0.58
SIX4-202ENST00000554079 TTC31Q49AM3 519 aaPredicted RBP11.42□□□□□ -0.58
SIX4-202ENST00000554079 HSP90AB3PQ58FF7 597 aa11.42□□□□□ -0.58
SIX4-202ENST00000554079 RNF20Q5VTR2 975 aa11.42□□□□□ -0.58
SIX4-202ENST00000554079 CEP135Q66GS9 1140 aa11.42□□□□□ -0.58
SIX4-202ENST00000554079 GOLGA6L1Q8N7Z2 621 aa11.42□□□□□ -0.58
SIX4-202ENST00000554079 IQUBQ8NA54 791 aa11.42□□□□□ -0.58
SIX4-202ENST00000554079 SMARCE1Q969G3 411 aa11.42□□□□□ -0.58
SIX4-202ENST00000554079 UBXN6Q9BZV1 441 aa11.42□□□□□ -0.58
SIX4-202ENST00000554079 ZBTB40Q9NUA8 1239 aa11.42□□□□□ -0.58
SIX4-202ENST00000554079 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.42□□□□□ -0.58
SIX4-202ENST00000554079 ZNF644Q9H582 1327 aaPredicted RBP11.41□□□□□ -0.58
SIX4-202ENST00000554079 IQGAP2Q13576 1575 aa11.41□□□□□ -0.58
SIX4-202ENST00000554079 ST5P78524 1137 aa11.41□□□□□ -0.58
SIX4-202ENST00000554079 LRMPQ12912 555 aa11.41□□□□□ -0.58
SIX4-202ENST00000554079 WDR63Q8IWG1 891 aa11.41□□□□□ -0.58
SIX4-202ENST00000554079 TMEM87AQ8NBN3 555 aa11.41□□□□□ -0.58
SIX4-202ENST00000554079 FBXO18Q8NFZ0 1043 aa11.41□□□□□ -0.58
SIX4-202ENST00000554079 CFAP44Q96MT7 982 aa11.41□□□□□ -0.58
SIX4-202ENST00000554079 MED4Q9NPJ6 270 aa11.41□□□□□ -0.58
SIX4-202ENST00000554079 CWC15Q9P013 229 aaKnown RBP11.41□□□□□ -0.58
SIX4-202ENST00000554079 CARMIL2Q6F5E8 1435 aa11.41□□□□□ -0.58
SIX4-202ENST00000554079 KDM5AP29375 1690 aaKnown RBP11.41□□□□□ -0.58
SIX4-202ENST00000554079 CCDC189A1A4V9 331 aa11.4□□□□□ -0.58
SIX4-202ENST00000554079 TRIM27P14373 513 aa11.4□□□□□ -0.58
SIX4-202ENST00000554079 MX1P20591 662 aa11.4□□□□□ -0.58
SIX4-202ENST00000554079 SWT1Q5T5J6 900 aaKnown RBP11.4□□□□□ -0.58
SIX4-202ENST00000554079 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.4□□□□□ -0.58
SIX4-202ENST00000554079 IFT57Q9NWB7 429 aa11.4□□□□□ -0.58
SIX4-202ENST00000554079 ADGRB2O60241 1585 aa11.4□□□□□ -0.58
SIX4-202ENST00000554079 AATKQ6ZMQ8 1374 aa11.4□□□□□ -0.59
SIX4-202ENST00000554079 ST18O60284 1047 aa11.4□□□□□ -0.59
SIX4-202ENST00000554079 ZRANB2O95218 330 aaKnown RBP eCLIP11.4□□□□□ -0.59
SIX4-202ENST00000554079 TPM4P67936 248 aa11.4□□□□□ -0.59
SIX4-202ENST00000554079 USP48Q86UV5 1035 aa11.4□□□□□ -0.59
SIX4-202ENST00000554079 SUGP1Q8IWZ8 645 aaKnown RBP11.4□□□□□ -0.59
SIX4-202ENST00000554079 SUFUQ9UMX1 484 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms