RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 TPM2P07951 284 aa15.29■□□□□ 0.04
SHMT2-207ENST00000553837 C1orf115Q9H7X2 142 aa15.29■□□□□ 0.04
SHMT2-207ENST00000553837 USP31Q70CQ4 1352 aa15.29■□□□□ 0.04
SHMT2-207ENST00000553837 KRT24Q2M2I5 525 aa15.29■□□□□ 0.04
SHMT2-207ENST00000553837 ARHGAP45Q92619 1136 aa15.28■□□□□ 0.04
SHMT2-207ENST00000553837 GRPEL1Q9HAV7 217 aa15.28■□□□□ 0.04
SHMT2-207ENST00000553837 EID1Q9Y6B2 187 aa15.28■□□□□ 0.04
SHMT2-207ENST00000553837 RGPD1P0DJD0 1748 aa15.28■□□□□ 0.04
SHMT2-207ENST00000553837 RGPD8O14715 1765 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-207ENST00000553837 LMOD3Q0VAK6 560 aa15.28■□□□□ 0.04
SHMT2-207ENST00000553837 ABCC4O15439 1325 aa15.28■□□□□ 0.04
SHMT2-207ENST00000553837 NUCB1Q02818 461 aa15.27■□□□□ 0.04
SHMT2-207ENST00000553837 MCM10Q7L590 875 aa15.27■□□□□ 0.04
SHMT2-207ENST00000553837 TBX22Q9Y458 520 aa15.27■□□□□ 0.04
SHMT2-207ENST00000553837 SIRT2Q8IXJ6 389 aa15.26■□□□□ 0.03
SHMT2-207ENST00000553837 TRIM44Q96DX7 344 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-207ENST00000553837 PDCL3Q9H2J4 239 aa15.26■□□□□ 0.03
SHMT2-207ENST00000553837 DDX11L8A8MPP1 907 aa15.26■□□□□ 0.03
SHMT2-207ENST00000553837 LNPKQ9C0E8 428 aa15.26■□□□□ 0.03
SHMT2-207ENST00000553837 MAP3K19Q56UN5 1328 aa15.25■□□□□ 0.03
SHMT2-207ENST00000553837 DIP2AQ14689 1571 aa15.25■□□□□ 0.03
SHMT2-207ENST00000553837 FER1L4A9Z1Z3 1794 aa15.24■□□□□ 0.03
SHMT2-207ENST00000553837 RIMS1Q86UR5 1692 aaKnown RBP15.24■□□□□ 0.03
SHMT2-207ENST00000553837 CHL1O00533 1208 aa15.24■□□□□ 0.03
SHMT2-207ENST00000553837 FOXO3O43524 673 aa15.24■□□□□ 0.03
SHMT2-207ENST00000553837 PDIA4P13667 645 aaKnown RBP15.24■□□□□ 0.03
SHMT2-207ENST00000553837 CHD1LQ86WJ1 897 aa15.24■□□□□ 0.03
SHMT2-207ENST00000553837 SPRYD3Q8NCJ5 442 aa15.23■□□□□ 0.03
SHMT2-207ENST00000553837 PRDM4Q9UKN5 801 aa15.22■□□□□ 0.03
SHMT2-207ENST00000553837 PIK3C2AO00443 1686 aa15.22■□□□□ 0.03
SHMT2-207ENST00000553837 MFAP1P55081 439 aaKnown RBP15.22■□□□□ 0.03
SHMT2-207ENST00000553837 RGS12O14924 1447 aa15.22■□□□□ 0.03
SHMT2-207ENST00000553837 CRB1P82279 1406 aa15.22■□□□□ 0.03
SHMT2-207ENST00000553837 TTC21AQ8NDW8 1320 aa15.21■□□□□ 0.03
SHMT2-207ENST00000553837 XRN1Q8IZH2 1706 aaKnown RBP15.21■□□□□ 0.03
SHMT2-207ENST00000553837 AEBP2Q6ZN18 517 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-207ENST00000553837 NGDNQ8NEJ9 315 aaKnown RBP15.21■□□□□ 0.03
SHMT2-207ENST00000553837 MIS18AQ9NYP9 233 aa15.21■□□□□ 0.03
SHMT2-207ENST00000553837 FMN2Q9NZ56 1722 aa15.21■□□□□ 0.03
SHMT2-207ENST00000553837 ERBB4Q15303 1308 aa15.21■□□□□ 0.03
SHMT2-207ENST00000553837 KCNA6P17658 529 aa15.21■□□□□ 0.02
SHMT2-207ENST00000553837 THEMISQ8N1K5 641 aaPredicted RBP15.21■□□□□ 0.02
SHMT2-207ENST00000553837 MTHFSDQ2M296 383 aaKnown RBP15.2■□□□□ 0.02
SHMT2-207ENST00000553837 ANKRD45Q5TZF3 282 aa15.2■□□□□ 0.02
SHMT2-207ENST00000553837 C22orf23Q9BZE7 217 aa15.2■□□□□ 0.02
SHMT2-207ENST00000553837 CEP170BQ9Y4F5 1589 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-207ENST00000553837 API5Q9BZZ5 524 aaKnown RBP15.19■□□□□ 0.02
SHMT2-207ENST00000553837 ARHGEF10O15013 1369 aa15.19■□□□□ 0.02
SHMT2-207ENST00000553837 KDM4FA0A1W2PPD8 638 aa15.19■□□□□ 0.02
SHMT2-207ENST00000553837 SBNO1A3KN83 1393 aa15.19■□□□□ 0.02
SHMT2-207ENST00000553837 NUTM2GQ5VZR2 741 aa15.18■□□□□ 0.02
SHMT2-207ENST00000553837 EYA1Q99502 592 aa15.18■□□□□ 0.02
SHMT2-207ENST00000553837 FLT4P35916 1363 aa15.18■□□□□ 0.02
SHMT2-207ENST00000553837 MARF1Q9Y4F3 1742 aaKnown RBP15.18■□□□□ 0.02
SHMT2-207ENST00000553837 PTMSP20962 102 aa15.18■□□□□ 0.02
SHMT2-207ENST00000553837 SKOR2Q2VWA4 1001 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-207ENST00000553837 GCC1Q96CN9 775 aa15.18■□□□□ 0.02
SHMT2-207ENST00000553837 KDRP35968 1356 aa15.17■□□□□ 0.02
SHMT2-207ENST00000553837 KIAA0232Q92628 1395 aa15.17■□□□□ 0.02
SHMT2-207ENST00000553837 HSCBQ8IWL3 235 aa15.17■□□□□ 0.02
SHMT2-207ENST00000553837 INTS3Q68E01 1043 aaKnown RBP15.17■□□□□ 0.02
SHMT2-207ENST00000553837 IGSF1Q8N6C5 1336 aa15.16■□□□□ 0.02
SHMT2-207ENST00000553837 AMPHP49418 695 aa15.15■□□□□ 0.02
SHMT2-207ENST00000553837 NLRP6P59044 892 aa15.15■□□□□ 0.02
SHMT2-207ENST00000553837 CHMP4BQ9H444 224 aaKnown RBP15.15■□□□□ 0.02
SHMT2-207ENST00000553837 BMP2KLQ5H9B9 411 aa15.15■□□□□ 0.02
SHMT2-207ENST00000553837 KIF24Q5T7B8 1368 aa15.14■□□□□ 0.01
SHMT2-207ENST00000553837 ATP10DQ9P241 1426 aa15.14■□□□□ 0.01
SHMT2-207ENST00000553837 KIAA1211Q6ZU35 1233 aa15.14■□□□□ 0.01
SHMT2-207ENST00000553837 RBM33Q96EV2 1170 aaKnown RBP15.14■□□□□ 0.01
SHMT2-207ENST00000553837 NWD1Q149M9 1564 aa15.14■□□□□ 0.01
SHMT2-207ENST00000553837 TERF1P54274 439 aa15.14■□□□□ 0.01
SHMT2-207ENST00000553837 G2E3Q7L622 706 aa15.14■□□□□ 0.01
SHMT2-207ENST00000553837 GBP4Q96PP9 640 aa15.14■□□□□ 0.01
SHMT2-207ENST00000553837 ANKARQ7Z5J8 1434 aa15.13■□□□□ 0.01
SHMT2-207ENST00000553837 CCDC173Q0VFZ6 552 aa15.13■□□□□ 0.01
SHMT2-207ENST00000553837 MSH6P52701 1360 aa15.13■□□□□ 0.01
SHMT2-207ENST00000553837 HOXC9P31274 260 aa15.12■□□□□ 0.01
SHMT2-207ENST00000553837 CIZ1Q9ULV3 898 aaPredicted RBP15.12■□□□□ 0.01
SHMT2-207ENST00000553837 SLC4A2P04920 1241 aa15.12■□□□□ 0.01
SHMT2-207ENST00000553837 DDIT3P35638 169 aa15.12■□□□□ 0.01
SHMT2-207ENST00000553837 DCTPP1Q9H773 170 aa15.12■□□□□ 0.01
SHMT2-207ENST00000553837 OFD1O75665 1012 aa15.11■□□□□ 0.01
SHMT2-207ENST00000553837 ZSCAN30Q86W11 494 aa15.11■□□□□ 0.01
SHMT2-207ENST00000553837 GAS2L3Q86XJ1 694 aa15.11■□□□□ 0.01
SHMT2-207ENST00000553837 C16orf71Q8IYS4 520 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-207ENST00000553837 ANP32BQ92688 251 aaKnown RBP15.11■□□□□ 0.01
SHMT2-207ENST00000553837 PPP1R9BQ96SB3 815 aa15.11■□□□□ 0.01
SHMT2-207ENST00000553837 MAP7D2Q96T17 732 aa15.11■□□□□ 0.01
SHMT2-207ENST00000553837 MEIS3Q99687 375 aa15.11■□□□□ 0.01
SHMT2-207ENST00000553837 TSPYL4Q9UJ04 414 aa15.11■□□□□ 0.01
SHMT2-207ENST00000553837 RBM25P49756 843 aaKnown RBP15.11■□□□□ 0.01
SHMT2-207ENST00000553837 ANKRD44Q8N8A2 993 aa15.11■□□□□ 0.01
SHMT2-207ENST00000553837 NCOA3Q9Y6Q9 1424 aa15.11■□□□□ 0.01
SHMT2-207ENST00000553837 GSPT1P15170 499 aaKnown RBP15.1■□□□□ 0.01
SHMT2-207ENST00000553837 CEP85Q6P2H3 762 aa15.1■□□□□ 0.01
SHMT2-207ENST00000553837 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-207ENST00000553837 TBC1D9Q6ZT07 1266 aa15.1■□□□□ 0.01
SHMT2-207ENST00000553837 RTF1Q92541 710 aaKnown RBP15.1■□□□□ 0.01
SHMT2-207ENST00000553837 SNX21Q969T3 373 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms