RNA–Protein interactions for RNA: ENST00000553335.5

TMEM260-204, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 560 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-204ENST00000553335 AKT1S1Q96B36 256 aa12.98□□□□□ -0.33
TMEM260-204ENST00000553335 POTEAQ6S8J7 498 aa12.97□□□□□ -0.33
TMEM260-204ENST00000553335 FNBP4Q8N3X1 1017 aaPredicted RBP12.97□□□□□ -0.33
TMEM260-204ENST00000553335 SPDYE1Q8NFV5 336 aaPredicted RBP12.97□□□□□ -0.33
TMEM260-204ENST00000553335 U2AF1L5P0DN76 240 aaPredicted RBP12.96□□□□□ -0.33
TMEM260-204ENST00000553335 U2AF1Q01081 240 aaKnown RBP eCLIP12.96□□□□□ -0.33
TMEM260-204ENST00000553335 TOM1L2Q6ZVM7 507 aa12.96□□□□□ -0.33
TMEM260-204ENST00000553335 UNC5CLQ8IV45 518 aa12.96□□□□□ -0.33
TMEM260-204ENST00000553335 PNISRQ8TF01 805 aaKnown RBP12.96□□□□□ -0.33
TMEM260-204ENST00000553335 PNNQ9H307 717 aaKnown RBP12.96□□□□□ -0.33
TMEM260-204ENST00000553335 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.96□□□□□ -0.33
TMEM260-204ENST00000553335 USP21Q9UK80 565 aa12.96□□□□□ -0.33
TMEM260-204ENST00000553335 CRB1P82279 1406 aa12.96□□□□□ -0.34
TMEM260-204ENST00000553335 AFF2P51816 1311 aa12.95□□□□□ -0.34
TMEM260-204ENST00000553335 IGSF1Q8N6C5 1336 aa12.95□□□□□ -0.34
TMEM260-204ENST00000553335 ZNF772Q68DY9 489 aaPredicted RBP12.95□□□□□ -0.34
TMEM260-204ENST00000553335 FAM9BQ8IZU0 186 aa12.95□□□□□ -0.34
TMEM260-204ENST00000553335 EYA1Q99502 592 aa12.95□□□□□ -0.34
TMEM260-204ENST00000553335 NLRP2Q9NX02 1062 aa12.95□□□□□ -0.34
TMEM260-204ENST00000553335 WNK3Q9BYP7 1800 aa12.95□□□□□ -0.34
TMEM260-204ENST00000553335 BCL9LQ86UU0 1499 aa12.94□□□□□ -0.34
TMEM260-204ENST00000553335 NBPF6Q5VWK0 638 aa12.94□□□□□ -0.34
TMEM260-204ENST00000553335 NBPF4Q96M43 638 aa12.94□□□□□ -0.34
TMEM260-204ENST00000553335 CARD10Q9BWT7 1032 aa12.94□□□□□ -0.34
TMEM260-204ENST00000553335 PARP4Q9UKK3 1724 aaKnown RBP12.93□□□□□ -0.34
TMEM260-204ENST00000553335 NEFMP07197 916 aa12.93□□□□□ -0.34
TMEM260-204ENST00000553335 SULT6B1Q6IMI4 303 aa12.93□□□□□ -0.34
TMEM260-204ENST00000553335 LARP1Q6PKG0 1096 aaKnown RBP12.93□□□□□ -0.34
TMEM260-204ENST00000553335 ADAMTS8Q9UP79 889 aa12.93□□□□□ -0.34
TMEM260-204ENST00000553335 CCDC9Q9Y3X0 531 aaKnown RBP12.93□□□□□ -0.34
TMEM260-204ENST00000553335 FCHSD2O94868 740 aa12.92□□□□□ -0.34
TMEM260-204ENST00000553335 HMOX1P09601 288 aa12.92□□□□□ -0.34
TMEM260-204ENST00000553335 VPS72Q15906 364 aa12.92□□□□□ -0.34
TMEM260-204ENST00000553335 TRPC5Q9UL62 973 aaPredicted RBP12.92□□□□□ -0.34
TMEM260-204ENST00000553335 KDRP35968 1356 aa12.92□□□□□ -0.34
TMEM260-204ENST00000553335 NCAPD2Q15021 1401 aa12.91□□□□□ -0.34
TMEM260-204ENST00000553335 USHBP1Q8N6Y0 703 aa12.91□□□□□ -0.34
TMEM260-204ENST00000553335 THRAP3Q9Y2W1 955 aaKnown RBP12.91□□□□□ -0.34
TMEM260-204ENST00000553335 RAPGEF4Q8WZA2 1011 aa12.9□□□□□ -0.34
TMEM260-204ENST00000553335 RSPH6AQ9H0K4 717 aa12.9□□□□□ -0.34
TMEM260-204ENST00000553335 USP35Q9P2H5 1018 aa12.9□□□□□ -0.34
TMEM260-204ENST00000553335 SPATA31A1Q5TZJ5 1347 aa12.89□□□□□ -0.35
TMEM260-204ENST00000553335 SPATA31A5Q5VU36 1347 aa12.89□□□□□ -0.35
TMEM260-204ENST00000553335 SPATA31A7Q8IWB4 1347 aa12.89□□□□□ -0.35
TMEM260-204ENST00000553335 MAPK8IP3Q9UPT6 1336 aa12.89□□□□□ -0.35
TMEM260-204ENST00000553335 TATP17735 454 aaPredicted RBP12.89□□□□□ -0.35
TMEM260-204ENST00000553335 PRKAR2BP31323 418 aa12.89□□□□□ -0.35
TMEM260-204ENST00000553335 AEBP1Q8IUX7 1158 aa12.89□□□□□ -0.35
TMEM260-204ENST00000553335 TCP11L2Q8N4U5 519 aa12.89□□□□□ -0.35
TMEM260-204ENST00000553335 RUNDC1Q96C34 613 aa12.89□□□□□ -0.35
TMEM260-204ENST00000553335 ATRNO75882 1429 aa12.88□□□□□ -0.35
TMEM260-204ENST00000553335 IL2RBP14784 551 aa12.88□□□□□ -0.35
TMEM260-204ENST00000553335 RXRBP28702 533 aa12.88□□□□□ -0.35
TMEM260-204ENST00000553335 CDCA7Q9BWT1 371 aaPredicted RBP12.88□□□□□ -0.35
TMEM260-204ENST00000553335 QTRT2Q9H974 415 aaKnown RBP12.88□□□□□ -0.35
TMEM260-204ENST00000553335 PLEKHG2Q9H7P9 1386 aa12.88□□□□□ -0.35
TMEM260-204ENST00000553335 DLG5Q8TDM6 1919 aa12.88□□□□□ -0.35
TMEM260-204ENST00000553335 PKD1L3Q7Z443 1732 aa12.88□□□□□ -0.35
TMEM260-204ENST00000553335 GLI3P10071 1580 aa12.87□□□□□ -0.35
TMEM260-204ENST00000553335 GJD4Q96KN9 370 aaPredicted RBP12.87□□□□□ -0.35
TMEM260-204ENST00000553335 CLEC11AQ9Y240 323 aa12.87□□□□□ -0.35
TMEM260-204ENST00000553335 VIRMAQ69YN4 1812 aaKnown RBP12.86□□□□□ -0.35
TMEM260-204ENST00000553335 GSE1Q14687 1217 aa12.86□□□□□ -0.35
TMEM260-204ENST00000553335 AMOTQ4VCS5 1084 aa12.86□□□□□ -0.35
TMEM260-204ENST00000553335 PLEKHO1Q53GL0 409 aaPredicted RBP12.86□□□□□ -0.35
TMEM260-204ENST00000553335 BARGINQ6ZT62 677 aa12.86□□□□□ -0.35
TMEM260-204ENST00000553335 CCDC146Q8IYE0 955 aa12.86□□□□□ -0.35
TMEM260-204ENST00000553335 VSIG10Q8N0Z9 540 aa12.86□□□□□ -0.35
TMEM260-204ENST00000553335 PLEKHF1Q96S99 279 aa12.86□□□□□ -0.35
TMEM260-204ENST00000553335 MEGF6O75095 1541 aa12.85□□□□□ -0.35
TMEM260-204ENST00000553335 PRR29P0C7W0 189 aa12.85□□□□□ -0.35
TMEM260-204ENST00000553335 REM2Q8IYK8 340 aaPredicted RBP12.85□□□□□ -0.35
TMEM260-204ENST00000553335 SPG7Q9UQ90 795 aa12.85□□□□□ -0.35
TMEM260-204ENST00000553335 NUBP1P53384 320 aa12.84□□□□□ -0.35
TMEM260-204ENST00000553335 PAXIP1Q6ZW49 1069 aaPredicted RBP12.84□□□□□ -0.35
TMEM260-204ENST00000553335 GAS2L2Q8NHY3 880 aa12.84□□□□□ -0.35
TMEM260-204ENST00000553335 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.84□□□□□ -0.35
TMEM260-204ENST00000553335 OVOS2A0A0G2JMS6 1433 aa12.84□□□□□ -0.35
TMEM260-204ENST00000553335 DISP2A7MBM2 1401 aa12.84□□□□□ -0.35
TMEM260-204ENST00000553335 SHANK3Q9BYB0 1731 aa12.84□□□□□ -0.35
TMEM260-204ENST00000553335 THSD7AQ9UPZ6 1657 aa12.83□□□□□ -0.35
TMEM260-204ENST00000553335 EXOC5O00471 708 aa12.83□□□□□ -0.36
TMEM260-204ENST00000553335 RBM6P78332 1123 aaKnown RBP12.83□□□□□ -0.36
TMEM260-204ENST00000553335 FAM98CQ17RN3 349 aaKnown RBP12.83□□□□□ -0.36
TMEM260-204ENST00000553335 ZCRB1Q8TBF4 217 aaKnown RBP12.83□□□□□ -0.36
TMEM260-204ENST00000553335 LRRC37A3O60309 1634 aa12.83□□□□□ -0.36
TMEM260-204ENST00000553335 A0A0G2JS52 829 aa12.82□□□□□ -0.36
TMEM260-204ENST00000553335 MYT1Q01538 1121 aa12.82□□□□□ -0.36
TMEM260-204ENST00000553335 DDB1Q16531 1140 aa12.82□□□□□ -0.36
TMEM260-204ENST00000553335 MTHFSDQ2M296 383 aaKnown RBP12.82□□□□□ -0.36
TMEM260-204ENST00000553335 PHACTR3Q96KR7 559 aa12.82□□□□□ -0.36
TMEM260-204ENST00000553335 APAF1O14727 1248 aa12.81□□□□□ -0.36
TMEM260-204ENST00000553335 NFE2L2Q16236 605 aa12.81□□□□□ -0.36
TMEM260-204ENST00000553335 C1orf141Q5JVX7 400 aa12.81□□□□□ -0.36
TMEM260-204ENST00000553335 NGEFQ8N5V2 710 aa12.81□□□□□ -0.36
TMEM260-204ENST00000553335 CFAP44Q96MT7 982 aa12.81□□□□□ -0.36
TMEM260-204ENST00000553335 CREBZFQ9NS37 354 aa12.81□□□□□ -0.36
TMEM260-204ENST00000553335 PCDH11XQ9BZA7 1347 aa12.81□□□□□ -0.36
TMEM260-204ENST00000553335 PCDH11YQ9BZA8 1340 aa12.81□□□□□ -0.36
TMEM260-204ENST00000553335 TNS2Q63HR2 1409 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms