RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 PARD3Q8TEW0 1356 aa17.57■□□□□ 0.4
PRPF40B-210ENST00000549547 MTHFSP49914 203 aa17.57■□□□□ 0.4
PRPF40B-210ENST00000549547 IGSF1Q8N6C5 1336 aa17.56■□□□□ 0.4
PRPF40B-210ENST00000549547 APBA3O96018 575 aa17.56■□□□□ 0.4
PRPF40B-210ENST00000549547 CNGB1Q14028 1251 aaPredicted RBP17.56■□□□□ 0.4
PRPF40B-210ENST00000549547 DEFB132Q7Z7B7 95 aa17.56■□□□□ 0.4
PRPF40B-210ENST00000549547 DDX54Q8TDD1 881 aaKnown RBP17.56■□□□□ 0.4
PRPF40B-210ENST00000549547 BCL11BQ9C0K0 894 aaPredicted RBP17.56■□□□□ 0.4
PRPF40B-210ENST00000549547 PCDH11XQ9BZA7 1347 aa17.55■□□□□ 0.4
PRPF40B-210ENST00000549547 PCDH11YQ9BZA8 1340 aa17.55■□□□□ 0.4
PRPF40B-210ENST00000549547 KAT6BQ8WYB5 2073 aa17.55■□□□□ 0.4
PRPF40B-210ENST00000549547 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.54■□□□□ 0.4
PRPF40B-210ENST00000549547 SPG7Q9UQ90 795 aa17.54■□□□□ 0.4
PRPF40B-210ENST00000549547 DOT1LQ8TEK3 1739 aa17.53■□□□□ 0.4
PRPF40B-210ENST00000549547 EN1Q05925 392 aaPredicted RBP17.53■□□□□ 0.4
PRPF40B-210ENST00000549547 RREB1Q92766 1687 aa17.52■□□□□ 0.4
PRPF40B-210ENST00000549547 IL13P35225 146 aa17.52■□□□□ 0.4
PRPF40B-210ENST00000549547 CFAP53Q96M91 514 aa17.52■□□□□ 0.4
PRPF40B-210ENST00000549547 DIAPH1O60610 1272 aaKnown RBP17.51■□□□□ 0.39
PRPF40B-210ENST00000549547 DDX10Q13206 875 aaKnown RBP17.51■□□□□ 0.39
PRPF40B-210ENST00000549547 BTAF1O14981 1849 aa17.51■□□□□ 0.39
PRPF40B-210ENST00000549547 KDRP35968 1356 aa17.5■□□□□ 0.39
PRPF40B-210ENST00000549547 COL3A1P02461 1466 aaPredicted RBP17.5■□□□□ 0.39
PRPF40B-210ENST00000549547 PLSCR1O15162 318 aa17.49■□□□□ 0.39
PRPF40B-210ENST00000549547 ACSBG1Q96GR2 724 aa17.49■□□□□ 0.39
PRPF40B-210ENST00000549547 CAMKK2Q96RR4 588 aa17.49■□□□□ 0.39
PRPF40B-210ENST00000549547 PPP2R1AP30153 589 aa17.48■□□□□ 0.39
PRPF40B-210ENST00000549547 EZH2Q15910 746 aaKnown RBP17.48■□□□□ 0.39
PRPF40B-210ENST00000549547 AMOTQ4VCS5 1084 aa17.48■□□□□ 0.39
PRPF40B-210ENST00000549547 SULT6B1Q6IMI4 303 aa17.48■□□□□ 0.39
PRPF40B-210ENST00000549547 NUP188Q5SRE5 1749 aa17.47■□□□□ 0.39
PRPF40B-210ENST00000549547 PLEKHO1Q53GL0 409 aaPredicted RBP17.47■□□□□ 0.39
PRPF40B-210ENST00000549547 CYP27B1O15528 508 aa17.46■□□□□ 0.39
PRPF40B-210ENST00000549547 KCNQ2O43526 872 aa17.46■□□□□ 0.39
PRPF40B-210ENST00000549547 RALBP1Q15311 655 aa17.46■□□□□ 0.39
PRPF40B-210ENST00000549547 IFNL2Q8IZJ0 200 aa17.46■□□□□ 0.39
PRPF40B-210ENST00000549547 PTF1AQ7RTS3 328 aa17.45■□□□□ 0.38
PRPF40B-210ENST00000549547 AEBP1Q8IUX7 1158 aa17.45■□□□□ 0.38
PRPF40B-210ENST00000549547 SYTL4Q96C24 671 aaPredicted RBP17.45■□□□□ 0.38
PRPF40B-210ENST00000549547 NUDCQ9Y266 331 aa17.45■□□□□ 0.38
PRPF40B-210ENST00000549547 ITGB4P16144 1822 aa17.44■□□□□ 0.38
PRPF40B-210ENST00000549547 HSP90AB1P08238 724 aaKnown RBP17.44■□□□□ 0.38
PRPF40B-210ENST00000549547 NKX1-1Q15270 411 aaPredicted RBP17.44■□□□□ 0.38
PRPF40B-210ENST00000549547 TOGARAM1Q9Y4F4 1720 aa17.44■□□□□ 0.38
PRPF40B-210ENST00000549547 ZNF316A6NFI3 1004 aaPredicted RBP17.43■□□□□ 0.38
PRPF40B-210ENST00000549547 U2SURPO15042 1029 aaKnown RBP17.43■□□□□ 0.38
PRPF40B-210ENST00000549547 PHKG2P15735 406 aa17.43■□□□□ 0.38
PRPF40B-210ENST00000549547 PRIM1P49642 420 aaKnown RBP17.43■□□□□ 0.38
PRPF40B-210ENST00000549547 NBPF14Q5TI25 921 aa17.43■□□□□ 0.38
PRPF40B-210ENST00000549547 HMOX1P09601 288 aa17.41■□□□□ 0.38
PRPF40B-210ENST00000549547 C1orf141Q5JVX7 400 aa17.41■□□□□ 0.38
PRPF40B-210ENST00000549547 ZNF530Q6P9A1 599 aaPredicted RBP17.41■□□□□ 0.38
PRPF40B-210ENST00000549547 LY75O60449 1722 aa17.4■□□□□ 0.38
PRPF40B-210ENST00000549547 TXNRD1Q16881 649 aa17.39■□□□□ 0.37
PRPF40B-210ENST00000549547 SLC27A3Q5K4L6 730 aa17.38■□□□□ 0.37
PRPF40B-210ENST00000549547 MPRIPQ6WCQ1 1025 aa17.38■□□□□ 0.37
PRPF40B-210ENST00000549547 DCAF5Q96JK2 942 aa17.38■□□□□ 0.37
PRPF40B-210ENST00000549547 MYBBP1AQ9BQG0 1328 aaKnown RBP17.38■□□□□ 0.37
PRPF40B-210ENST00000549547 HMGB2P26583 209 aaKnown RBP17.37■□□□□ 0.37
PRPF40B-210ENST00000549547 TMOD3Q9NYL9 352 aa17.37■□□□□ 0.37
PRPF40B-210ENST00000549547 SCN11AQ9UI33 1791 aa17.37■□□□□ 0.37
PRPF40B-210ENST00000549547 ERVV-2B6SEH9 535 aa17.36■□□□□ 0.37
PRPF40B-210ENST00000549547 U2AF1L5P0DN76 240 aaPredicted RBP17.36■□□□□ 0.37
PRPF40B-210ENST00000549547 U2AF1Q01081 240 aaKnown RBP eCLIP17.36■□□□□ 0.37
PRPF40B-210ENST00000549547 AKAP4Q5JQC9 854 aa17.36■□□□□ 0.37
PRPF40B-210ENST00000549547 PROM2Q8N271 834 aa17.36■□□□□ 0.37
PRPF40B-210ENST00000549547 SMARCC1Q92922 1105 aaPredicted RBP17.36■□□□□ 0.37
PRPF40B-210ENST00000549547 VIRMAQ69YN4 1812 aaKnown RBP17.35■□□□□ 0.37
PRPF40B-210ENST00000549547 PAPPAQ13219 1627 aa17.34■□□□□ 0.37
PRPF40B-210ENST00000549547 R3HDM1Q15032 1099 aaKnown RBP17.34■□□□□ 0.37
PRPF40B-210ENST00000549547 GAS2L2Q8NHY3 880 aa17.34■□□□□ 0.37
PRPF40B-210ENST00000549547 KDM6AO15550 1401 aaPredicted RBP17.33■□□□□ 0.36
PRPF40B-210ENST00000549547 PALLDQ8WX93 1383 aa17.33■□□□□ 0.36
PRPF40B-210ENST00000549547 PSDA5PKW4 1024 aaPredicted RBP17.33■□□□□ 0.36
PRPF40B-210ENST00000549547 FCHSD2O94868 740 aa17.33■□□□□ 0.36
PRPF40B-210ENST00000549547 PIGBQ92521 554 aa17.33■□□□□ 0.36
PRPF40B-210ENST00000549547 RSPH6AQ9H0K4 717 aa17.33■□□□□ 0.36
PRPF40B-210ENST00000549547 PRKRIP1Q9H875 184 aaPredicted RBP17.33■□□□□ 0.36
PRPF40B-210ENST00000549547 STK32BQ9NY57 414 aa17.33■□□□□ 0.36
PRPF40B-210ENST00000549547 NEFMP07197 916 aa17.32■□□□□ 0.36
PRPF40B-210ENST00000549547 PRKAR2BP31323 418 aa17.32■□□□□ 0.36
PRPF40B-210ENST00000549547 MTHFSDQ2M296 383 aaKnown RBP17.32■□□□□ 0.36
PRPF40B-210ENST00000549547 ADAMTS7Q9UKP4 1686 aa17.32■□□□□ 0.36
PRPF40B-210ENST00000549547 CABP4P57796 275 aa17.31■□□□□ 0.36
PRPF40B-210ENST00000549547 PNNQ9H307 717 aaKnown RBP17.31■□□□□ 0.36
PRPF40B-210ENST00000549547 CCNL1Q9UK58 526 aaPredicted RBP17.31■□□□□ 0.36
PRPF40B-210ENST00000549547 C5P01031 1676 aa17.3■□□□□ 0.36
PRPF40B-210ENST00000549547 QSER1Q2KHR3 1735 aa17.3■□□□□ 0.36
PRPF40B-210ENST00000549547 MAP3K5Q99683 1374 aa17.29■□□□□ 0.36
PRPF40B-210ENST00000549547 TAF1LQ8IZX4 1826 aa17.29■□□□□ 0.36
PRPF40B-210ENST00000549547 SLC15A2Q16348 729 aa17.29■□□□□ 0.36
PRPF40B-210ENST00000549547 ANO8Q9HCE9 1232 aaPredicted RBP17.29■□□□□ 0.36
PRPF40B-210ENST00000549547 LRRC4BQ9NT99 713 aa17.29■□□□□ 0.36
PRPF40B-210ENST00000549547 MRC1P22897 1456 aa17.29■□□□□ 0.36
PRPF40B-210ENST00000549547 GNAT3A8MTJ3 354 aa17.28■□□□□ 0.36
PRPF40B-210ENST00000549547 ZNF831Q5JPB2 1677 aa17.28■□□□□ 0.36
PRPF40B-210ENST00000549547 LRP5O75197 1615 aa17.27■□□□□ 0.36
PRPF40B-210ENST00000549547 CASZ1Q86V15 1759 aa17.26■□□□□ 0.35
PRPF40B-210ENST00000549547 RNMTO43148 476 aaKnown RBP17.26■□□□□ 0.35
PRPF40B-210ENST00000549547 PHACTR3Q96KR7 559 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms