RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CREBRFQ8IUR6 639 aa19.63■□□□□ 0.73
CUX1-213ENST00000549414 IL16Q14005 1332 aa19.62■□□□□ 0.73
CUX1-213ENST00000549414 SPG7Q9UQ90 795 aa19.62■□□□□ 0.73
CUX1-213ENST00000549414 FIBPO43427 364 aa19.62■□□□□ 0.73
CUX1-213ENST00000549414 MEIS3Q99687 375 aa19.62■□□□□ 0.73
CUX1-213ENST00000549414 C8orf34Q49A92 452 aa19.61■□□□□ 0.73
CUX1-213ENST00000549414 MRE11P49959 708 aa19.61■□□□□ 0.73
CUX1-213ENST00000549414 MX1P20591 662 aa19.61■□□□□ 0.73
CUX1-213ENST00000549414 NASPP49321 788 aaPredicted RBP19.61■□□□□ 0.73
CUX1-213ENST00000549414 TRDNQ13061 729 aa19.61■□□□□ 0.73
CUX1-213ENST00000549414 ABCA8O94911 1581 aa19.6■□□□□ 0.73
CUX1-213ENST00000549414 RASSF8Q8NHQ8 419 aa19.6■□□□□ 0.73
CUX1-213ENST00000549414 BECN2A8MW95 431 aa19.6■□□□□ 0.73
CUX1-213ENST00000549414 VPS37DQ86XT2 251 aa19.6■□□□□ 0.73
CUX1-213ENST00000549414 ERC1Q8IUD2 1116 aa19.6■□□□□ 0.73
CUX1-213ENST00000549414 STK3Q13188 491 aa19.59■□□□□ 0.73
CUX1-213ENST00000549414 TBC1D9Q6ZT07 1266 aa19.59■□□□□ 0.73
CUX1-213ENST00000549414 RAD21O60216 631 aa19.59■□□□□ 0.73
CUX1-213ENST00000549414 YTHDC2Q9H6S0 1430 aaKnown RBP19.59■□□□□ 0.73
CUX1-213ENST00000549414 CPLX2Q6PUV4 134 aaKnown RBP19.59■□□□□ 0.73
CUX1-213ENST00000549414 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.58■□□□□ 0.72
CUX1-213ENST00000549414 GOLGA6L19H0YKK7 550 aa19.58■□□□□ 0.72
CUX1-213ENST00000549414 SEC24BO95487 1268 aa19.58■□□□□ 0.72
CUX1-213ENST00000549414 RALYLQ86SE5 291 aaKnown RBP19.58■□□□□ 0.72
CUX1-213ENST00000549414 VAMP4O75379 141 aa19.57■□□□□ 0.72
CUX1-213ENST00000549414 NFXL1Q6ZNB6 911 aa19.57■□□□□ 0.72
CUX1-213ENST00000549414 SAMD9LQ8IVG5 1584 aa19.57■□□□□ 0.72
CUX1-213ENST00000549414 ADGBQ8N7X0 1667 aa19.57■□□□□ 0.72
CUX1-213ENST00000549414 SYNE3Q6ZMZ3 975 aa19.57■□□□□ 0.72
CUX1-213ENST00000549414 TBC1D32Q96NH3 1257 aa19.57■□□□□ 0.72
CUX1-213ENST00000549414 MCM2P49736 904 aa19.56■□□□□ 0.72
CUX1-213ENST00000549414 MRPL50Q8N5N7 158 aaKnown RBP19.56■□□□□ 0.72
CUX1-213ENST00000549414 PSMA5P28066 241 aa19.56■□□□□ 0.72
CUX1-213ENST00000549414 ADAMTS2O95450 1211 aa19.55■□□□□ 0.72
CUX1-213ENST00000549414 TPM4P67936 248 aa19.55■□□□□ 0.72
CUX1-213ENST00000549414 HDAC1Q13547 482 aaPredicted RBP19.55■□□□□ 0.72
CUX1-213ENST00000549414 MPNDQ8N594 471 aa19.55■□□□□ 0.72
CUX1-213ENST00000549414 DNAAF4Q8WXU2 420 aa19.55■□□□□ 0.72
CUX1-213ENST00000549414 PI4KAP2A4QPH2 592 aa19.55■□□□□ 0.72
CUX1-213ENST00000549414 PI4KAP1Q8N8J0 262 aa19.55■□□□□ 0.72
CUX1-213ENST00000549414 AKAP17AQ02040 695 aaKnown RBP19.55■□□□□ 0.72
CUX1-213ENST00000549414 BMP2KLQ5H9B9 411 aa19.55■□□□□ 0.72
CUX1-213ENST00000549414 PUS7Q96PZ0 661 aaKnown RBP19.55■□□□□ 0.72
CUX1-213ENST00000549414 CHRNA2Q15822 529 aa19.54■□□□□ 0.72
CUX1-213ENST00000549414 C16orf71Q8IYS4 520 aaPredicted RBP19.54■□□□□ 0.72
CUX1-213ENST00000549414 KIF1BPQ96EK5 621 aa19.54■□□□□ 0.72
CUX1-213ENST00000549414 CYP46A1Q9Y6A2 500 aa19.54■□□□□ 0.72
CUX1-213ENST00000549414 MAGI2Q86UL8 1455 aa19.54■□□□□ 0.72
CUX1-213ENST00000549414 PTPRTO14522 1441 aa19.54■□□□□ 0.72
CUX1-213ENST00000549414 MTHFSDQ2M296 383 aaKnown RBP19.54■□□□□ 0.72
CUX1-213ENST00000549414 JAKMIP1Q96N16 626 aaKnown RBP19.54■□□□□ 0.72
CUX1-213ENST00000549414 NPATQ14207 1427 aa19.54■□□□□ 0.72
CUX1-213ENST00000549414 RNF123Q5XPI4 1314 aa19.54■□□□□ 0.72
CUX1-213ENST00000549414 CEBPZQ03701 1054 aaKnown RBP19.54■□□□□ 0.72
CUX1-213ENST00000549414 RSPH6AQ9H0K4 717 aa19.54■□□□□ 0.72
CUX1-213ENST00000549414 ARHGEF5Q12774 1597 aa19.54■□□□□ 0.72
CUX1-213ENST00000549414 NUCB1Q02818 461 aa19.53■□□□□ 0.72
CUX1-213ENST00000549414 LARP6Q9BRS8 491 aaKnown RBP19.53■□□□□ 0.72
CUX1-213ENST00000549414 PPP1R1BQ9UD71 204 aaPredicted RBP19.53■□□□□ 0.72
CUX1-213ENST00000549414 ABCC1P33527 1531 aa19.53■□□□□ 0.72
CUX1-213ENST00000549414 NCBP3Q53F19 620 aaKnown RBP19.53■□□□□ 0.72
CUX1-213ENST00000549414 ZMYM3Q14202 1370 aa19.53■□□□□ 0.72
CUX1-213ENST00000549414 PTPRCP08575 1304 aa19.53■□□□□ 0.72
CUX1-213ENST00000549414 JARID2Q92833 1246 aaPredicted RBP19.53■□□□□ 0.72
CUX1-213ENST00000549414 CCDC8Q9H0W5 538 aaPredicted RBP19.53■□□□□ 0.72
CUX1-213ENST00000549414 BOLA2Q9H3K6 86 aa19.53■□□□□ 0.72
CUX1-213ENST00000549414 ATP10AO60312 1499 aa19.52■□□□□ 0.72
CUX1-213ENST00000549414 KIF6Q6ZMV9 814 aa19.52■□□□□ 0.72
CUX1-213ENST00000549414 KRT28Q7Z3Y7 464 aa19.52■□□□□ 0.72
CUX1-213ENST00000549414 MYD88Q99836 296 aa19.52■□□□□ 0.72
CUX1-213ENST00000549414 UGGT1Q9NYU2 1555 aa19.52■□□□□ 0.72
CUX1-213ENST00000549414 NPC1L1Q9UHC9 1359 aa19.52■□□□□ 0.72
CUX1-213ENST00000549414 TTC37Q6PGP7 1564 aa19.52■□□□□ 0.71
CUX1-213ENST00000549414 FKBP4Q02790 459 aaKnown RBP eCLIP19.51■□□□□ 0.71
CUX1-213ENST00000549414 TRIM29Q14134 588 aa19.51■□□□□ 0.71
CUX1-213ENST00000549414 CNNM1Q9NRU3 951 aa19.51■□□□□ 0.71
CUX1-213ENST00000549414 TRIM35Q9UPQ4 493 aa19.51■□□□□ 0.71
CUX1-213ENST00000549414 LRRC59Q96AG4 307 aaKnown RBP19.51■□□□□ 0.71
CUX1-213ENST00000549414 KCNA6P17658 529 aa19.5■□□□□ 0.71
CUX1-213ENST00000549414 SSFA2P28290 1259 aa19.5■□□□□ 0.71
CUX1-213ENST00000549414 ARHGAP45Q92619 1136 aa19.5■□□□□ 0.71
CUX1-213ENST00000549414 CCDC34Q96HJ3 373 aa19.5■□□□□ 0.71
CUX1-213ENST00000549414 CWC22Q9HCG8 908 aaKnown RBP19.5■□□□□ 0.71
CUX1-213ENST00000549414 HIP1O00291 1037 aa19.5■□□□□ 0.71
CUX1-213ENST00000549414 AMOTQ4VCS5 1084 aa19.5■□□□□ 0.71
CUX1-213ENST00000549414 PPP1R42Q7Z4L9 355 aa19.5■□□□□ 0.71
CUX1-213ENST00000549414 STK11IPQ8N1F8 1099 aa19.5■□□□□ 0.71
CUX1-213ENST00000549414 DBF4Q9UBU7 674 aaPredicted RBP19.5■□□□□ 0.71
CUX1-213ENST00000549414 ZBTB40Q9NUA8 1239 aa19.49■□□□□ 0.71
CUX1-213ENST00000549414 CIZ1Q9ULV3 898 aaPredicted RBP19.49■□□□□ 0.71
CUX1-213ENST00000549414 MBD3O95983 291 aa19.49■□□□□ 0.71
CUX1-213ENST00000549414 MAP3K19Q56UN5 1328 aa19.49■□□□□ 0.71
CUX1-213ENST00000549414 PLA2R1Q13018 1463 aa19.49■□□□□ 0.71
CUX1-213ENST00000549414 ANKRD24Q8TF21 1146 aa19.49■□□□□ 0.71
CUX1-213ENST00000549414 CHMP4CQ96CF2 233 aa19.49■□□□□ 0.71
CUX1-213ENST00000549414 EYA1Q99502 592 aa19.49■□□□□ 0.71
CUX1-213ENST00000549414 CASTP20810 708 aaKnown RBP19.48■□□□□ 0.71
CUX1-213ENST00000549414 KDM5CP41229 1560 aa19.48■□□□□ 0.71
CUX1-213ENST00000549414 CCDC57Q2TAC2 916 aa19.48■□□□□ 0.71
CUX1-213ENST00000549414 MAP3K2Q9Y2U5 619 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms